BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_H10_T7.seq
(412 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09871.1 NCU09871.1 hypothetical protein (8727 - 13145) 40 3e-04
NCU06948.1 NCU06948.1 hypothetical protein (10019 - 11398) 38 0.001
NCU01564.1 NCU01564.1 hypothetical protein ( (AL451012) related ... 28 0.80
NCU02554.1 NCU02554.1 hypothetical protein (164228 - 169299) 28 1.4
NCU08828.1 NCU08828.1 hypothetical protein (12319 - 15264) 28 1.4
NCU01644.1 NCU01644.1 hypothetical protein ( (AL390189) related ... 28 1.4
NCU06575.1 NCU06575.1 predicted protein (382 - 1654) 26 5.2
NCU09573.1 NCU09573.1 predicted protein (10825 - 12546) 26 5.2
NCU02089.1 NCU02089.1 hypothetical protein (19992 - 22376) 25 6.8
NCU02738.1 NCU02738.1 hypothetical protein (88927 - 90192) 25 8.8
NCU08287.1 NCU08287.1 hypothetical protein (19879 - 25504) 25 8.8
>NCU09871.1 NCU09871.1 hypothetical protein (8727 - 13145)
Length = 1051
Score = 39.7 bits (91), Expect = 3e-04
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -2
Query: 387 DGSGYITVDELQQACQE--HNMPDAFLDDVIKEADQDNDGRIDYGEFVAMMTKGNMGVGR 214
DG G IT D+L++ ++ +N+PDA + +I+E D G +D EF+ +M
Sbjct: 124 DGKGMITQDDLRRVSKQVGNNIPDADITAMIEEFDASGKGGVDEDEFLRLMMS------- 176
Query: 213 RTMRNSLNISMRDA 172
R ++S RDA
Sbjct: 177 RMHTKPCSVSARDA 190
>NCU06948.1 NCU06948.1 hypothetical protein (10019 - 11398)
Length = 263
Score = 38.1 bits (87), Expect = 0.001
Identities = 27/92 (29%), Positives = 47/92 (50%), Gaps = 3/92 (3%)
Frame = -2
Query: 390 KDGSGYITVDELQQACQEH--NMPDAFLDDVIKEADQDNDGRIDYGEFVAMMTKGNMGV- 220
KD +G IT +EL +E N A L+D++ EAD + DG I++ EF+ +M++
Sbjct: 25 KDHTGDITAEELGVVMRELGLNPSKAELEDLVNEADTNKDGVINFEEFLNLMSQSVKETD 84
Query: 219 GRRTMRNSLNISMRDAPGAI*TSTMYIQLVAL 124
+ + + + +D G I T + L +L
Sbjct: 85 SEKELLEAFKVFDKDNSGTISTEELRAVLKSL 116
>NCU01564.1 NCU01564.1 hypothetical protein ( (AL451012) related to
peroxisomal Ca-dependent
Length = 631
Score = 28.5 bits (62), Expect = 0.80
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 324 DAFLDDVIKEADQDNDGRIDYGEF 253
D L D+IK D DG+I Y EF
Sbjct: 53 DHMLKDIIKVVDTSGDGKIQYEEF 76
>NCU02554.1 NCU02554.1 hypothetical protein (164228 - 169299)
Length = 1652
Score = 27.7 bits (60), Expect = 1.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 253 KFSIVDAPIIVLVSFFNDIIKKSIWHVVLLASLLQFIHCDVTTSIFD 393
K + DA I V ND + I + LL L+Q H D TTS+ +
Sbjct: 777 KHGLYDALIYVWNQALNDYLTPFIDLLALLVPLMQNGHADGTTSVLE 823
>NCU08828.1 NCU08828.1 hypothetical protein (12319 - 15264)
Length = 894
Score = 27.7 bits (60), Expect = 1.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 321 AFLDDVIKEADQDNDGRIDYGEFVAMMTKGNMGVGR 214
A L++ +K D ++D+ VA++T G G+GR
Sbjct: 293 ALLEESLKLGPNDPGEKVDFKGRVALVTGGGAGIGR 328
>NCU01644.1 NCU01644.1 hypothetical protein ( (AL390189) related to
transport protein USO1 [
Length = 1171
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = -2
Query: 339 EHNMPDAFLDDVIKEADQDNDGRI------DYGEFVAMMTKGNMGVGRRTMRNSLNISMR 178
+ +PD +LDD E +DN RI D G ++++T G R + +SL +
Sbjct: 625 DQKLPDVYLDDTFVEFFKDNYSRIIRAIDRDPGLEISVITNGVQKGISRELVDSLRAQLE 684
Query: 177 DAPGAI 160
+ A+
Sbjct: 685 EKDRAL 690
>NCU06575.1 NCU06575.1 predicted protein (382 - 1654)
Length = 372
Score = 25.8 bits (55), Expect = 5.2
Identities = 11/29 (37%), Positives = 18/29 (61%), Gaps = 4/29 (13%)
Frame = -1
Query: 247 HDDQGQHGGGA----KNNEKQPEYQHERR 173
H GQ GGGA +N++ Q ++QH+ +
Sbjct: 280 HGHGGQRGGGADDGLRNHQHQHQHQHQHQ 308
>NCU09573.1 NCU09573.1 predicted protein (10825 - 12546)
Length = 573
Score = 25.8 bits (55), Expect = 5.2
Identities = 13/45 (28%), Positives = 23/45 (50%)
Frame = -3
Query: 383 EVVTSQWMNCSKLAKSTTCQMLFLMMSLKKLTRTMMGASTMENLL 249
E + QW++ S LA+ T Q+ L+ + +TR M+N +
Sbjct: 109 ESIHGQWLDPSLLARQLTDQLHTLIRNEPSMTRVFCKNMAMKNAM 153
>NCU02089.1 NCU02089.1 hypothetical protein (19992 - 22376)
Length = 750
Score = 25.4 bits (54), Expect = 6.8
Identities = 15/40 (37%), Positives = 20/40 (49%)
Frame = -2
Query: 297 EADQDNDGRIDYGEFVAMMTKGNMGVGRRTMRNSLNISMR 178
E D + DG ++YG F A G + RR M LN + R
Sbjct: 187 EDDSEGDGMLEYGFFGAGTLYGTT-LTRRVMMKKLNKARR 225
>NCU02738.1 NCU02738.1 hypothetical protein (88927 - 90192)
Length = 311
Score = 25.0 bits (53), Expect = 8.8
Identities = 15/41 (36%), Positives = 19/41 (45%)
Frame = -2
Query: 390 KDGSGYITVDELQQACQEHNMPDAFLDDVIKEADQDNDGRI 268
K G G ++ D QAC + DV K+ D D DG I
Sbjct: 259 KRGDGVMSFDLFVQACISLKR----MTDVFKKYDDDRDGYI 295
>NCU08287.1 NCU08287.1 hypothetical protein (19879 - 25504)
Length = 1832
Score = 25.0 bits (53), Expect = 8.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 342 QEHNMPDAFLDDVIKEADQDND 277
QEH++P FL+ + KE DQ ++
Sbjct: 1404 QEHDIPVQFLEVLAKEDDQKSE 1425
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2676834
Number of Sequences: 6531
Number of extensions: 55341
Number of successful extensions: 176
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of query: 137
length of database: 3,158,374
effective HSP length: 42
effective length of query: 94
effective length of database: 2,884,072
effective search space: 271102768
effective search space used: 271102768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)