BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_H12_T7.seq
(498 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02514.1 NCU02514.1 ATP SYNTHASE ALPHA CHAIN, MITOCHONDRIAL PR... 34 0.025
NCU00010.1 NCU00010.1 hypothetical protein (39221 - 35919) 27 4.0
NCU01454.1 NCU01454.1 hypothetical protein (2105 - 743) 25 8.8
NCU06763.1 NCU06763.1 predicted protein (92457 - 91426) 25 8.8
NCU09246.1 NCU09246.1 predicted protein (28571 - 30594) 25 8.8
>NCU02514.1 NCU02514.1 ATP SYNTHASE ALPHA CHAIN, MITOCHONDRIAL
PRECURSOR (37722 - 35112)
Length = 551
Score = 33.9 bits (76), Expect = 0.025
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = +1
Query: 391 EIHKILRERIEQYNRKVGIENIGRVVQVGDGIARI 495
E+ IL +RI + + GRV+ VGDGIAR+
Sbjct: 48 EVSSILEQRIRGVQEESNLAETGRVLSVGDGIARV 82
>NCU00010.1 NCU00010.1 hypothetical protein (39221 - 35919)
Length = 1053
Score = 26.6 bits (57), Expect = 4.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 451 SQSLLSYYIVQYVRAEFYEFRRLEGSPLVF 362
+ S+ SY V+Y AE YEF R + L F
Sbjct: 529 NDSITSYETVKYFNAEKYEFARYRNAILNF 558
>NCU01454.1 NCU01454.1 hypothetical protein (2105 - 743)
Length = 340
Score = 25.4 bits (54), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 382 EGSPLVFLDSFFGSKGNNNA 323
E P++F+ FGSK NN +
Sbjct: 89 ETQPIIFIHGLFGSKKNNRS 108
>NCU06763.1 NCU06763.1 predicted protein (92457 - 91426)
Length = 323
Score = 25.4 bits (54), Expect = 8.8
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Frame = +1
Query: 25 DESVKLRFTAQARLEIFSRQNAIG-LHAKQRFLTIKSYVH 141
DES RFT++AR+ +S +G L + R + YVH
Sbjct: 75 DESFAARFTSRARVRYYSEDPELGRLISPCRCKGSQKYVH 114
>NCU09246.1 NCU09246.1 predicted protein (28571 - 30594)
Length = 182
Score = 25.4 bits (54), Expect = 8.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 219 GRPPGQVSHATCL*MNIHFCT 157
G+ PG +A CL M+IH C+
Sbjct: 115 GKRPGGGCNAACLHMSIHHCS 135
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2727456
Number of Sequences: 6531
Number of extensions: 52074
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of query: 166
length of database: 3,158,374
effective HSP length: 42
effective length of query: 123
effective length of database: 2,884,072
effective search space: 354740856
effective search space used: 354740856
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)