BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_7_A10_T7.seq
(621 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00434.1 NCU00434.1 hypothetical protein (60337 - 58401) 83 5e-17
NCU08377.1 NCU08377.1 ADENYLATE CYCLASE (ATP PYROPHOSPHATE-LYASE... 43 7e-05
NCU01767.1 NCU01767.1 Type 2C Protein Phosphatase related protei... 37 0.003
NCU09804.1 NCU09804.1 hypothetical protein (12031 - 15206) 30 0.63
NCU06376.1 NCU06376.1 predicted protein (137542 - 135719) 28 1.4
NCU00712.1 NCU00712.1 hypothetical protein (44045 - 40470) 28 1.4
NCU02356.1 NCU02356.1 WHITE COLLAR 1 PROTEIN (WC1) (31383 - 27346) 28 1.4
NCU02768.1 NCU02768.1 hypothetical protein (27576 - 21386) 28 2.4
NCU02174.1 NCU02174.1 predicted protein (9313 - 7979) 27 3.1
NCU06925.1 NCU06925.1 hypothetical protein (164568 - 160758) 27 3.1
NCU08905.1 NCU08905.1 hypothetical protein (8498 - 10347) 27 3.1
NCU01502.1 NCU01502.1 hypothetical protein (17426 - 15697) 27 4.1
NCU02615.1 NCU02615.1 hypothetical protein (97175 - 95293) 27 5.3
NCU02120.1 NCU02120.1 predicted protein (24319 - 18780) 26 6.9
NCU07625.1 NCU07625.1 predicted protein (15161 - 17566) 26 6.9
NCU00124.1 NCU00124.1 predicted protein (148566 - 153342) 26 6.9
NCU09449.1 NCU09449.1 hypothetical protein (5874 - 2580) 26 6.9
NCU00724.1 NCU00724.1 predicted protein (99653 - 97332) 26 6.9
NCU06884.1 NCU06884.1 hypothetical protein (32583 - 39423) 26 9.0
NCU08291.1 NCU08291.1 hypothetical protein (10313 - 11727) 26 9.0
NCU08629.1 NCU08629.1 predicted protein (64542 - 66071) 26 9.0
NCU00302.1 NCU00302.1 hypothetical protein (298478 - 302609) 26 9.0
>NCU00434.1 NCU00434.1 hypothetical protein (60337 - 58401)
Length = 619
Score = 83.2 bits (204), Expect = 5e-17
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Frame = -2
Query: 596 RVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSL-EFLILASDGLWDVVTNDEAVAMV 420
RV GVLAV+RA GD +K V P E V+ EF+I+A DGLWDV ++ EAV +V
Sbjct: 407 RVNGVLAVTRALGDTYIKDLVTGHPYTTETVIQPDWDEFMIIACDGLWDVCSDQEAVDLV 466
Query: 419 KPVEDPEQAAKGLLQEASQRGSADNITVVIVRF 321
+ +++P AAK L+ A R S DN++ +IVRF
Sbjct: 467 RDIQEPVIAAKKLVDHALSRFSTDNLSCMIVRF 499
>NCU08377.1 NCU08377.1 ADENYLATE CYCLASE (ATP PYROPHOSPHATE-LYASE)
(ADENYLYL CYCLASE) (15252
Length = 2300
Score = 42.7 bits (99), Expect = 7e-05
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Frame = -2
Query: 608 AGTW-----RVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSLEFLILASDGLWDVVT 444
AG W R+ VL VSRAFG L V A P+I E +D E +++AS LW+ +
Sbjct: 1727 AGGWVSRNGRLNDVLNVSRAFGYTELLPAVQAAPDITEHTIDDKDETVLIASKELWEHLR 1786
Query: 443 NDEAVAMVKPV-EDPEQAAKGLLQEASQRGSADNITVVIV 327
+ V + + D +A++ L A GS + + ++++
Sbjct: 1787 PELIVDVARECRSDLMKASQKLRDLAIAYGSTNKLLIMMI 1826
>NCU01767.1 NCU01767.1 Type 2C Protein Phosphatase related protein
[MIPS] (104295 - 106266)
Length = 622
Score = 37.4 bits (85), Expect = 0.003
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 26/85 (30%)
Frame = -2
Query: 596 RVGGVLAVSRAFGDKLLK-------------------------QYVVADPEIKEEVVDSS 492
RV G L +RAFGD K YV A+P + ++
Sbjct: 389 RVLGGLEPTRAFGDASYKWSRELSEKLREKFFGRSVSPLLKTPPYVTAEPVVTTTKIEPE 448
Query: 491 L-EFLILASDGLWDVVTNDEAVAMV 420
+F+++A+DG W+++TN+E V +V
Sbjct: 449 KGDFVVMATDGFWEMLTNEEVVGLV 473
>NCU09804.1 NCU09804.1 hypothetical protein (12031 - 15206)
Length = 877
Score = 29.6 bits (65), Expect = 0.63
Identities = 15/58 (25%), Positives = 30/58 (50%)
Frame = -2
Query: 446 TNDEAVAMVKPVEDPEQAAKGLLQEASQRGSADNITVVIVRFLDGTTTSAGDGPSEEV 273
T+++ M+K +E KGL E+ A N+ +++ ++GT +S G + E+
Sbjct: 692 TSEQRAEMIKSLEVTRDIWKGLADESMDALKAFNVLEIMLDKINGTQSSQHSGSAIEI 749
>NCU06376.1 NCU06376.1 predicted protein (137542 - 135719)
Length = 564
Score = 28.5 bits (62), Expect = 1.4
Identities = 17/49 (34%), Positives = 26/49 (52%)
Frame = +3
Query: 42 NTAPPSPCVPTLPTI*DSREHGTTTKLRPSQFRFRSTGGRRHMTSTLSI 188
++ PP P ++P+ S +T K RPS S+ ++TSTLSI
Sbjct: 344 SSPPPPPTTSSMPSSRSS--FSSTKKARPSSSSSSSSTSSIYLTSTLSI 390
>NCU00712.1 NCU00712.1 hypothetical protein (44045 - 40470)
Length = 1173
Score = 28.5 bits (62), Expect = 1.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 9 AAEVPLGSYGNNTAPPSPCVPTLPT 83
+A +PLG Y TAP SP P P+
Sbjct: 658 SATLPLGEYMKPTAPSSPVAPLTPS 682
>NCU02356.1 NCU02356.1 WHITE COLLAR 1 PROTEIN (WC1) (31383 - 27346)
Length = 1262
Score = 28.5 bits (62), Expect = 1.4
Identities = 11/31 (35%), Positives = 18/31 (57%)
Frame = +2
Query: 527 QRQHTALEVYHQMREKQQEHHQHAMSQPTSQ 619
Q+Q + Q +++QQ+ HQH Q T+Q
Sbjct: 31 QQQQQQQQQQQQQQQQQQQQHQHQQQQKTNQ 61
>NCU02768.1 NCU02768.1 hypothetical protein (27576 - 21386)
Length = 1671
Score = 27.7 bits (60), Expect = 2.4
Identities = 19/64 (29%), Positives = 25/64 (38%)
Frame = +2
Query: 428 QQLHR*LQHPIAHH*QG*GIQVSCQLPPP*SLDQRQHTALEVYHQMREKQQEHHQHAMSQ 607
QQL QH HH + Q P Q+Q + +HQ Q+HHQ
Sbjct: 1046 QQLLLLQQHHHHHHQVQHSQHLQSQHHPQHPQQQQQQQQQQQHHQSHVHVQQHHQQNQWP 1105
Query: 608 PTSQ 619
P+ Q
Sbjct: 1106 PSQQ 1109
>NCU02174.1 NCU02174.1 predicted protein (9313 - 7979)
Length = 267
Score = 27.3 bits (59), Expect = 3.1
Identities = 13/42 (30%), Positives = 19/42 (44%)
Frame = +2
Query: 494 SCQLPPP*SLDQRQHTALEVYHQMREKQQEHHQHAMSQPTSQ 619
+C PPP QH +HQ +++QQ+ Q Q Q
Sbjct: 143 ACSCPPP------QHHHHHHHHQQQQQQQQQQQQQQQQQQQQ 178
>NCU06925.1 NCU06925.1 hypothetical protein (164568 - 160758)
Length = 958
Score = 27.3 bits (59), Expect = 3.1
Identities = 25/72 (34%), Positives = 37/72 (50%), Gaps = 9/72 (12%)
Frame = -2
Query: 419 KPVEDPE--QAAKGL--LQEASQ-----RGSADNITVVIVRFLDGTTTSAGDGPSEEVAK 267
KPV+ + QAA+ L L+EA Q GS D DGT AG G +++ K
Sbjct: 8 KPVDPAQEKQAAEALASLKEAQQPAADESGSEDEGA-------DGTAQEAGSGSTKKKNK 60
Query: 266 DQSEEVAKDQSS 231
+S++ KD+S+
Sbjct: 61 KKSKKKNKDKSA 72
>NCU08905.1 NCU08905.1 hypothetical protein (8498 - 10347)
Length = 532
Score = 27.3 bits (59), Expect = 3.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 533 QHTALEVYHQMREKQQEHHQHAMSQPTS 616
QH++ Q +++QQ+ QHA Q TS
Sbjct: 337 QHSSSAYSRQQQQQQQQQQQHARQQSTS 364
>NCU01502.1 NCU01502.1 hypothetical protein (17426 - 15697)
Length = 554
Score = 26.9 bits (58), Expect = 4.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 521 LDQRQHTALEVYHQMREKQQEHHQHAMSQ 607
+D+++ A E+Y QM+EK E H+ +++
Sbjct: 514 IDEKRLKAEEMYKQMQEKNGERHKEKVAE 542
>NCU02615.1 NCU02615.1 hypothetical protein (97175 - 95293)
Length = 421
Score = 26.6 bits (57), Expect = 5.3
Identities = 14/44 (31%), Positives = 22/44 (49%)
Frame = +2
Query: 488 QVSCQLPPP*SLDQRQHTALEVYHQMREKQQEHHQHAMSQPTSQ 619
Q+ Q PPP L Q+Q + Q +++QQ+ Q + Q Q
Sbjct: 187 QIPGQAPPP-PLQQQQQQQQQQQQQQQQQQQQQQQFSPQQQYQQ 229
>NCU02120.1 NCU02120.1 predicted protein (24319 - 18780)
Length = 1729
Score = 26.2 bits (56), Expect = 6.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 521 LDQRQHTALEVYHQMREKQQEHHQHAMSQPTSQ 619
L+Q+Q + Q +++QQ+ Q QPT +
Sbjct: 1049 LEQQQQQQQQQQQQQQQQQQQQQQQQQQQPTQE 1081
>NCU07625.1 NCU07625.1 predicted protein (15161 - 17566)
Length = 677
Score = 26.2 bits (56), Expect = 6.9
Identities = 33/121 (27%), Positives = 46/121 (37%), Gaps = 1/121 (0%)
Frame = +2
Query: 251 PPHFGPWQPPRSVHLQQTSSFRPRSEQ*RQ*CCQHCPFEKLLEVVPSPL-AQDLLLA*PW 427
P P PP S L + + RP S P + L P+PL D +LA
Sbjct: 291 PQAVQPQMPPASRPLPRFPAPRPVSWLHVPRPVSWPPVPRPLPRFPAPLQVPDPILAPLQ 350
Query: 428 QQLHR*LQHPIAHH*QG*GIQVSCQLPPP*SLDQRQHTALEVYHQMREKQQEHHQHAMSQ 607
QQ ++ QH H Q Q Q +Q + Q ++QQ+ QH + Q
Sbjct: 351 QQQYQQQQHHQHHQQQHQQQQGQQQQHQQQQQQGQQQQHQQQQQQQGQQQQQQQQHQVYQ 410
Query: 608 P 610
P
Sbjct: 411 P 411
>NCU00124.1 NCU00124.1 predicted protein (148566 - 153342)
Length = 1568
Score = 26.2 bits (56), Expect = 6.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 521 LDQRQHTALEVYHQMREKQQEHHQHAMSQPTSQ 619
L QRQH + +HQ +++QQ+ Q Q Q
Sbjct: 180 LQQRQH---QQHHQQQQQQQQQQQQQQQQQQQQ 209
>NCU09449.1 NCU09449.1 hypothetical protein (5874 - 2580)
Length = 1059
Score = 26.2 bits (56), Expect = 6.9
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = +2
Query: 521 LDQRQHTALEVYHQMREKQQEHHQHAMSQPTS 616
L Q+QH HQ +++QQ+HH PT+
Sbjct: 70 LQQQQHQ-----HQQQQQQQQHHPAYPQPPTT 96
>NCU00724.1 NCU00724.1 predicted protein (99653 - 97332)
Length = 685
Score = 26.2 bits (56), Expect = 6.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 54 PSPCVPTLPTI*DSREHGTTTKLRPSQFRFRS--TGGRRHMTSTLSI 188
P P P I S + TT++ P+Q R RS R+H + T S+
Sbjct: 416 PDPVSTVKPNIYTSNHNSKTTQIHPTQARTRSQTQTRRQHDSYTSSV 462
>NCU06884.1 NCU06884.1 hypothetical protein (32583 - 39423)
Length = 2039
Score = 25.8 bits (55), Expect = 9.0
Identities = 13/38 (34%), Positives = 16/38 (41%)
Frame = +3
Query: 15 EVPLGSYGNNTAPPSPCVPTLPTI*DSREHGTTTKLRP 128
E PLGS P P VP P + + T+ L P
Sbjct: 1932 ETPLGSVPRTLTSPVPYVPASPRVPGANPDAGTSSLIP 1969
>NCU08291.1 NCU08291.1 hypothetical protein (10313 - 11727)
Length = 421
Score = 25.8 bits (55), Expect = 9.0
Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Frame = -1
Query: 393 GEGTTSRSFSKGQC*QHHCRHCSLLGRNDDVCWRWTER-GGCQGPK*GGRQGPI 235
G G R+ + Q Q+ C S G + + W+W +R G GP G+ G I
Sbjct: 166 GNGRGGRAVAFTQYPQYSC---STTGSSLNELWKWRQRLEGKAGPSEDGKDGTI 216
>NCU08629.1 NCU08629.1 predicted protein (64542 - 66071)
Length = 509
Score = 25.8 bits (55), Expect = 9.0
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Frame = +3
Query: 3 VVAAEVPLGSYGNNTAPPSPCVPTLPTI*DS---------REHGTTTKLRPSQFRFRST 152
V VP T+ P+P V T+PT S +G TT PS F S+
Sbjct: 82 VAGLTVPASPASETTSAPTPSVSTIPTPSSSSGSQRGAQTNTNGGTTHDEPSPITFASS 140
>NCU00302.1 NCU00302.1 hypothetical protein (298478 - 302609)
Length = 969
Score = 25.8 bits (55), Expect = 9.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 527 QRQHTALEVYHQMREKQQEHHQHAMSQPTSQ 619
Q QH + H +++QQ+H Q Q Q
Sbjct: 651 QHQHQQQQHQHHQQQQQQQHQQQQQHQQQQQ 681
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3970240
Number of Sequences: 6531
Number of extensions: 85483
Number of successful extensions: 479
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of query: 207
length of database: 3,158,374
effective HSP length: 42
effective length of query: 164
effective length of database: 2,884,072
effective search space: 472987808
effective search space used: 472987808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)