BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_7_B01_T7.seq
         (536 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU08552.1 NCU08552.1 hypothetical protein (84112 - 84904)             32  0.10
NCU09582.1 NCU09582.1 hypothetical protein (45290 - 40271)             28  2.0
NCU09832.1 NCU09832.1 predicted protein (44529 - 46415)                27  4.4

>NCU08552.1 NCU08552.1 hypothetical protein (84112 - 84904)
          Length = 127

 Score = 32.0 bits (71), Expect = 0.10
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +3

Query: 327 MIQPQTLLNVADNSGARKLMCIRVIGAAGNQRYARIGDVI 446
           MIQ +T+LN  DNSGA  + C  V+   G +R+A I  V+
Sbjct: 1   MIQLKTMLNCIDNSGAALVECAMVV---GQKRHASIVVVV 37



>NCU09582.1 NCU09582.1 hypothetical protein (45290 - 40271)
          Length = 696

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 344 GLRLNHIILISICYFNAKG*KKYCLSRKKNRAFFL 240
           G  L+H+    +CYF AK     C  R  N +F L
Sbjct: 325 GFGLHHMYSAFVCYFMAKTYLSLCTGRMTNSSFTL 359



>NCU09832.1 NCU09832.1 predicted protein (44529 - 46415)
          Length = 470

 Score = 26.6 bits (57), Expect = 4.4
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 19  RSVTLRPTETRMGSGKGSPEYWVSVVKPGRILYEMGGVSETVARAAISIAASKMPIR 189
           R + L   +  + +GK   EYW   +   R++ + GG++ T A A     A+K+ +R
Sbjct: 296 REIKLVYDDESVPAGK---EYWGKKMGKERVIRKSGGITCTTAYAISHTGAAKLLLR 349



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3127660
Number of Sequences: 6531
Number of extensions: 65446
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of query: 178
length of database: 3,158,374
effective HSP length: 42
effective length of query: 136
effective length of database: 2,884,072
effective search space: 392233792
effective search space used: 392233792
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)