BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_7_C06_T7.seq
(357 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09813.1 NCU09813.1 hypothetical protein (47094 - 46663) 55 6e-09
NCU01282.1 NCU01282.1 hypothetical protein (17707 - 18606) 32 0.058
NCU08565.1 NCU08565.1 hypothetical protein (13248 - 18168) 29 0.38
NCU07268.1 NCU07268.1 hypothetical protein (50866 - 48528) 29 0.49
NCU02076.1 NCU02076.1 hypothetical protein (43891 - 44788) 28 1.1
NCU06791.1 NCU06791.1 predicted protein (60338 - 62551) 27 1.9
NCU07937.1 NCU07937.1 hypothetical protein (120405 - 122464) 26 3.2
NCU00345.1 NCU00345.1 hypothetical protein (461186 - 464625) 26 4.2
NCU07433.1 NCU07433.1 predicted protein (32105 - 36289) 26 4.2
NCU06842.1 NCU06842.1 hypothetical protein (6606 - 9747) 25 5.5
NCU07328.1 NCU07328.1 hypothetical protein (99296 - 95327) 25 5.5
NCU01373.1 NCU01373.1 hypothetical protein ( (AL451020) hypothet... 25 5.5
NCU07056.1 NCU07056.1 predicted protein (4995 - 6593) 25 7.1
NCU09014.1 NCU09014.1 hypothetical protein (14652 - 13761) 25 7.1
NCU02461.1 NCU02461.1 predicted protein (35384 - 34284) 25 9.3
NCU00017.1 NCU00017.1 hypothetical protein (67301 - 64744) 25 9.3
>NCU09813.1 NCU09813.1 hypothetical protein (47094 - 46663)
Length = 99
Score = 55.1 bits (131), Expect = 6e-09
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +1
Query: 22 LMNAYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 174
LM A+C+RQ L S+ FLF+G+R++ TPD LEM++GD ++ Q GG
Sbjct: 48 LMTAFCERQGKTLASVRFLFEGQRVQPTDTPDTLEMQDGDCLEVHQEQVGG 98
>NCU01282.1 NCU01282.1 hypothetical protein (17707 - 18606)
Length = 228
Score = 32.0 bits (71), Expect = 0.058
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 85 GRRLRGEQTPDELEMEEGDEIDAMLHQTGGGFP 183
G+ + + DELE + +E+D+ LH+TGG P
Sbjct: 154 GQPIDEGELEDELEKLQQEEVDSKLHETGGSIP 186
>NCU08565.1 NCU08565.1 hypothetical protein (13248 - 18168)
Length = 1593
Score = 29.3 bits (64), Expect = 0.38
Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Frame = -3
Query: 256 TFYSSSKGSIRHRTARLQQAPSKGEESPLRSGEAWRQSRRLP-PSQAHQGSAHH 98
T +S+ RHR AR + + E+ R EA R +R+LP P QG A +
Sbjct: 1498 TATTSTTTGNRHREARELKRQKQKEDKERREREASRAARKLPEPKSGKQGYAKY 1551
>NCU07268.1 NCU07268.1 hypothetical protein (50866 - 48528)
Length = 708
Score = 28.9 bits (63), Expect = 0.49
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 357 SSGRPGRYSDVLSPPD--PPSGYGTES*PRKFFHFLHFTLVLKVAYDIEQPGCSKLLLRA 184
S+ RP ++ PPD PP R F F VL +++ QP +L A
Sbjct: 347 SAQRPAKHIQDSCPPDENPPVTPRRSHRQRLFDRFRPRKNVLDTSHEERQPDDPTILTNA 406
Query: 183 RKAPS 169
RK+PS
Sbjct: 407 RKSPS 411
>NCU02076.1 NCU02076.1 hypothetical protein (43891 - 44788)
Length = 248
Score = 27.7 bits (60), Expect = 1.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -3
Query: 202 QAPSKGEESPLRSGEAWRQSRRLPPSQAHQGSAH 101
++P KG+E + G +++ +LPP++A + S H
Sbjct: 198 RSPEKGKEILMAIGRRFKEVLQLPPNEALEFSGH 231
>NCU06791.1 NCU06791.1 predicted protein (60338 - 62551)
Length = 659
Score = 26.9 bits (58), Expect = 1.9
Identities = 18/65 (27%), Positives = 28/65 (42%)
Frame = -3
Query: 247 SSSKGSIRHRTARLQQAPSKGEESPLRSGEAWRQSRRLPPSQAHQGSAHHGAYDHQKGKQ 68
S G + R ++ + EE P + G+ R +R PSQ H + Q+GK+
Sbjct: 167 SKDNGKATAKGVRGRKEVASIEEEPAQEGDVRRSTRSTNPSQ-------HSSKTTQRGKE 219
Query: 67 WS*DP 53
DP
Sbjct: 220 NRRDP 224
>NCU07937.1 NCU07937.1 hypothetical protein (120405 - 122464)
Length = 556
Score = 26.2 bits (56), Expect = 3.2
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 29 TPTATVSLWISTPLLSFLMVVGSVVSRPLMSLRWRKATRLTPCFTRPEG 175
T +SLW + L + G PL+S R A RLTP + P G
Sbjct: 458 TTDGDISLWKNINL-QLSVESGHFFDNPLVSYRKVSAFRLTPRYQDPNG 505
>NCU00345.1 NCU00345.1 hypothetical protein (461186 - 464625)
Length = 1125
Score = 25.8 bits (55), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 118 ELEMEEGDEIDAMLHQTGGGFPRP*KELAAAWL 216
++EME+ ++D Q GG +P EL AWL
Sbjct: 273 QIEMEDKAKVDDA--QPSGGAEKPQTELTPAWL 303
>NCU07433.1 NCU07433.1 predicted protein (32105 - 36289)
Length = 1357
Score = 25.8 bits (55), Expect = 4.2
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = -3
Query: 250 YSSSKGSIRHRTARLQQAPSKGEESPLRSGEAWRQSRRLPPSQAHQGSAHHGAYDHQKGK 71
Y S G + H R +G+ R +A RQ L S + HH Y H+
Sbjct: 1093 YGVSSGDLGHEAGR-----EEGKAQDRREAKAERQYTLLNSSSLSRHHYHHHHYYHRNRD 1147
Query: 70 QWS*DP 53
Q + P
Sbjct: 1148 QRNNSP 1153
>NCU06842.1 NCU06842.1 hypothetical protein (6606 - 9747)
Length = 917
Score = 25.4 bits (54), Expect = 5.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 342 GRYSDVLSPPDPPSGYGT 289
GR SD+ PP PP+ Y +
Sbjct: 476 GRISDINPPPQPPNPYAS 493
>NCU07328.1 NCU07328.1 hypothetical protein (99296 - 95327)
Length = 775
Score = 25.4 bits (54), Expect = 5.5
Identities = 21/71 (29%), Positives = 30/71 (41%)
Frame = +2
Query: 32 PTATVSLWISTPLLSFLMVVGSVVSRPLMSLRWRKATRLTPCFTRPEGAFLALRRSLLQP 211
PT+TV LW+ T LS +V +V L W L P + + SL+
Sbjct: 634 PTSTVLLWLLTTTLS--LVTAPLVEPRYFILPWVFYRLLVPA--------MPVSSSLVSS 683
Query: 212 GCSMSYATFRT 244
S S+A+ T
Sbjct: 684 SSSSSFASSTT 694
>NCU01373.1 NCU01373.1 hypothetical protein ( (AL451020)
hypothetical protein [Neurospora cr
Length = 461
Score = 25.4 bits (54), Expect = 5.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 232 SIRHRTARLQQAPSKGE--ESPLRSGEAWRQSRRLPPSQAHQGSAHHGAYDHQKG 74
++RH + +QA S G + L S A ++ P QA+QGS+H G Y Q G
Sbjct: 253 AMRHHSVIERQAASAGMSVQDLLNSSPA----KQHPLPQAYQGSSHDG-YSIQSG 302
>NCU07056.1 NCU07056.1 predicted protein (4995 - 6593)
Length = 307
Score = 25.0 bits (53), Expect = 7.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Frame = -1
Query: 207 CSKLLLRARKAPSGLVKHGVNLVAFLHLKLIRGL------LTTEPTTIKKESNGVEIHRL 46
C +L+ K SG LV L L++G+ +T P + K +N EI ++
Sbjct: 183 CGGVLVDLWKGLSGYGIVVKGLVRCFSLPLLKGVQKDPAQVTARPCRLVKVTNA-EIPQV 241
Query: 45 TVAV----GVHQLPRPRP 4
+ GV Q+P PRP
Sbjct: 242 PIIFVGKHGVFQVPEPRP 259
>NCU09014.1 NCU09014.1 hypothetical protein (14652 - 13761)
Length = 264
Score = 25.0 bits (53), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 213 AVLCRMLPLELE*NVRS-ERTCEAMILCH 296
+VL R+ LE N RTCE +++CH
Sbjct: 51 SVLARLKRLEEHYNAHGMRRTCEGILVCH 79
>NCU02461.1 NCU02461.1 predicted protein (35384 - 34284)
Length = 366
Score = 24.6 bits (52), Expect = 9.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 247 SSSKGSIRHRTARLQQAPSKGEESPLRSGEAWRQSRRLPPSQAHQGS 107
SS + S+ RT+R S E +++ + QSRRL +Q+H S
Sbjct: 24 SSPRPSVASRTSR----SSLRREHDVQTDQLQPQSRRLSSAQSHSPS 66
>NCU00017.1 NCU00017.1 hypothetical protein (67301 - 64744)
Length = 809
Score = 24.6 bits (52), Expect = 9.3
Identities = 19/87 (21%), Positives = 39/87 (43%)
Frame = -1
Query: 276 RKFFHFLHFTLVLKVAYDIEQPGCSKLLLRARKAPSGLVKHGVNLVAFLHLKLIRGLLTT 97
R+ FHF ++ D + L+L+ ++ VKH V V+ LH ++RG +
Sbjct: 124 RRSFHFFQDVTAPCLSGDFDGAFWRVLVLQICESEPA-VKHAVLAVSSLHEAMVRGAVAP 182
Query: 96 EPTTIKKESNGVEIHRLTVAVGVHQLP 16
K+S + + ++ + ++P
Sbjct: 183 YVDIADKQSFALFQYNKAISCLLDRMP 209
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2442277
Number of Sequences: 6531
Number of extensions: 52443
Number of successful extensions: 225
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of query: 119
length of database: 3,158,374
effective HSP length: 42
effective length of query: 76
effective length of database: 2,884,072
effective search space: 219189472
effective search space used: 219189472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)