BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_7_C11_T7.seq
         (563 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU08552.1 NCU08552.1 hypothetical protein (84112 - 84904)             35  0.013
NCU09832.1 NCU09832.1 predicted protein (44529 - 46415)                30  0.42
NCU09582.1 NCU09582.1 hypothetical protein (45290 - 40271)             27  3.6
NCU09604.1 NCU09604.1 predicted protein (11021 - 12945)                26  6.1

>NCU08552.1 NCU08552.1 hypothetical protein (84112 - 84904)
          Length = 127

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
 Frame = +2

Query: 347 MIQPQTLLNVADNSGARKLMCIRVIGAAGNQRYARIGDVI-------VAVIKDALPQMPL 505
           MIQ +T+LN  DNSGA  + C  V+   G +R+A I  V+        A +  +     +
Sbjct: 1   MIQLKTMLNCIDNSGAALVECAMVV---GQKRHASIVVVVQKQRGADSAGMAASSAATKV 57

Query: 506 ERSEVIRAVIVRT 544
           +R ++  AV+VRT
Sbjct: 58  KRGDIRHAVVVRT 70



>NCU09832.1 NCU09832.1 predicted protein (44529 - 46415)
          Length = 470

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 17/63 (26%), Positives = 32/63 (49%)
 Frame = +1

Query: 19  YVYXPDKPVTLRPTETRMGSGKGSPEYWVSVVKPGRILYEMGGVSETVARAAISIAASKM 198
           + Y  D+ + L   +  + +GK   EYW   +   R++ + GG++ T A A     A+K+
Sbjct: 290 FEYSQDREIKLVYDDESVPAGK---EYWGKKMGKERVIRKSGGITCTTAYAISHTGAAKL 346

Query: 199 PIR 207
            +R
Sbjct: 347 LLR 349



>NCU09582.1 NCU09582.1 hypothetical protein (45290 - 40271)
          Length = 696

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 364 GLRLNHIILISICYFNAKG*KKYCLSRKKNRAF 266
           G  L+H+    +CYF AK     C  R  N +F
Sbjct: 325 GFGLHHMYSAFVCYFMAKTYLSLCTGRMTNSSF 357



>NCU09604.1 NCU09604.1 predicted protein (11021 - 12945)
          Length = 256

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 561 ERPPGQVRTITARITSDLSRGIWGNASLITATITSP 454
           +R  G +  +    T+ L R +W   S +TA +TSP
Sbjct: 60  DRSSGCIPQLAPCFTAGLPRDVWFYRSKLTAFVTSP 95



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3384807
Number of Sequences: 6531
Number of extensions: 71660
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of query: 187
length of database: 3,158,374
effective HSP length: 42
effective length of query: 145
effective length of database: 2,884,072
effective search space: 418190440
effective search space used: 418190440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)