BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_7_D03_T7.seq
(370 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09813.1 NCU09813.1 hypothetical protein (47094 - 46663) 56 4e-09
NCU06338.1 NCU06338.1 hypothetical protein (13912 - 7907) 26 4.4
NCU06461.1 NCU06461.1 hypothetical protein (164191 - 167119) 26 4.4
NCU01282.1 NCU01282.1 hypothetical protein (17707 - 18606) 25 5.8
NCU09081.1 NCU09081.1 predicted protein (45173 - 45877) 25 9.8
>NCU09813.1 NCU09813.1 hypothetical protein (47094 - 46663)
Length = 99
Score = 55.8 bits (133), Expect = 4e-09
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +2
Query: 23 LMNAYCDRQSVDMKAIAFLFDGRRLRAEQTPDELEMEDGDEIDAVLQQTGG 175
LM A+C+RQ + ++ FLF+G+R++ TPD LEM+DGD ++ +Q GG
Sbjct: 48 LMTAFCERQGKTLASVRFLFEGQRVQPTDTPDTLEMQDGDCLEVHQEQVGG 98
>NCU06338.1 NCU06338.1 hypothetical protein (13912 - 7907)
Length = 1923
Score = 25.8 bits (55), Expect = 4.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 275 LDFHSLMRSLMTDQVAQQGARLSTASSRRLEGDG 174
LD SL++ + +G RLS S R EG+G
Sbjct: 1676 LDVGSLVKGIGAPAATSEGPRLSLFSMSRPEGEG 1709
>NCU06461.1 NCU06461.1 hypothetical protein (164191 - 167119)
Length = 920
Score = 25.8 bits (55), Expect = 4.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 20 LLMNAYCDRQSVDMKAIAFLFDGRRLRAEQTPDELEME 133
+L Y R D KA+ L D RRL + D + E
Sbjct: 734 MLAEHYFGRDPPDTKAVTALIDNRRLHLNENIDHIFWE 771
>NCU01282.1 NCU01282.1 hypothetical protein (17707 - 18606)
Length = 228
Score = 25.4 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = +2
Query: 86 GRRLRAEQTPDELEMEDGDEIDAVLQQTGG 175
G+ + + DELE +E+D+ L +TGG
Sbjct: 154 GQPIDEGELEDELEKLQQEEVDSKLHETGG 183
>NCU09081.1 NCU09081.1 predicted protein (45173 - 45877)
Length = 234
Score = 24.6 bits (52), Expect = 9.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 229 PNKEQDFQRLLLGAWRETASGLLKHGVDLVAI 134
PN +++F RL GAW + S + H V+++ +
Sbjct: 95 PNSKREFLRLSKGAWPKPKSSFV-HVVNILLV 125
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2237017
Number of Sequences: 6531
Number of extensions: 40056
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of query: 123
length of database: 3,158,374
effective HSP length: 42
effective length of query: 80
effective length of database: 2,884,072
effective search space: 230725760
effective search space used: 230725760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)