BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_7_D06_T7.seq
(214 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01282.1 NCU01282.1 hypothetical protein (17707 - 18606) 30 0.091
NCU08565.1 NCU08565.1 hypothetical protein (13248 - 18168) 28 0.35
NCU09813.1 NCU09813.1 hypothetical protein (47094 - 46663) 28 0.45
NCU01694.1 NCU01694.1 hypothetical protein ( hypothetical protei... 25 3.8
NCU09052.1 NCU09052.1 predicted protein (25925 - 24934) 25 3.8
NCU01996.1 NCU01996.1 hypothetical protein (37277 - 35050) 24 6.5
NCU07952.1 NCU07952.1 hypothetical protein (25859 - 23667) 24 6.5
NCU08023.1 NCU08023.1 hypothetical protein (186533 - 181249) 23 8.5
NCU00512.1 NCU00512.1 hypothetical protein (61461 - 64079) 23 8.5
>NCU01282.1 NCU01282.1 hypothetical protein (17707 - 18606)
Length = 228
Score = 30.0 bits (66), Expect = 0.091
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 87 DELDTEEGDEIDALLHQTGGGFP 155
DEL+ + +E+D+ LH+TGG P
Sbjct: 164 DELEKLQQEEVDSKLHETGGSIP 186
>NCU08565.1 NCU08565.1 hypothetical protein (13248 - 18168)
Length = 1593
Score = 28.1 bits (61), Expect = 0.35
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Frame = -2
Query: 198 RHRTARVQQAPLKGEESPLRFGGAGRQSRRLP-PCQAHQGYAHH 70
RHR AR + + E+ R A R +R+LP P QGYA +
Sbjct: 1508 RHREARELKRQKQKEDKERREREASRAARKLPEPKSGKQGYAKY 1551
>NCU09813.1 NCU09813.1 hypothetical protein (47094 - 46663)
Length = 99
Score = 27.7 bits (60), Expect = 0.45
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = +3
Query: 54 DGPRLRGEHTPDELDTEEGDEIDALLHQTGG 146
+G R++ TPD L+ ++GD ++ Q GG
Sbjct: 68 EGQRVQPTDTPDTLEMQDGDCLEVHQEQVGG 98
>NCU01694.1 NCU01694.1 hypothetical protein ( hypothetical protein
B1D1.350 [imported] - Neu
Length = 214
Score = 24.6 bits (52), Expect = 3.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 145 GAFLALQRSLLHPG 186
G +LAL RSL HPG
Sbjct: 76 GMYLALARSLTHPG 89
>NCU09052.1 NCU09052.1 predicted protein (25925 - 24934)
Length = 287
Score = 24.6 bits (52), Expect = 3.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 109 ATRLTPCSTKPEGAFLALQRSLLHPGCSMS 198
AT T T P+G L HPGC +S
Sbjct: 174 ATTTTRTITGPDGTVLVPPPIPAHPGCELS 203
>NCU01996.1 NCU01996.1 hypothetical protein (37277 - 35050)
Length = 705
Score = 23.9 bits (50), Expect = 6.5
Identities = 10/22 (45%), Positives = 13/22 (58%)
Frame = -2
Query: 147 PLRFGGAGRQSRRLPPCQAHQG 82
P +GG G + R PP Q +QG
Sbjct: 371 PRGYGGPGPRGGRGPPPQGYQG 392
>NCU07952.1 NCU07952.1 hypothetical protein (25859 - 23667)
Length = 710
Score = 23.9 bits (50), Expect = 6.5
Identities = 10/35 (28%), Positives = 18/35 (50%)
Frame = +3
Query: 60 PRLRGEHTPDELDTEEGDEIDALLHQTGGGFPRPS 164
PR+ + +PDE+D + + +LH F P+
Sbjct: 293 PRIHPQQSPDEIDPNQPNHF--MLHTPANSFGPPA 325
>NCU08023.1 NCU08023.1 hypothetical protein (186533 - 181249)
Length = 1626
Score = 23.5 bits (49), Expect = 8.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 124 PCSTKPEGAFLALQRSLLHPGCSMSD 201
PC AF ++QRSLL P + D
Sbjct: 1423 PCREVRHLAFASMQRSLLSPELTSED 1448
>NCU00512.1 NCU00512.1 hypothetical protein (61461 - 64079)
Length = 872
Score = 23.5 bits (49), Expect = 8.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 157 ALQRSLLHPGCS 192
AL+ LLHPGCS
Sbjct: 281 ALKTRLLHPGCS 292
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1129857
Number of Sequences: 6531
Number of extensions: 19597
Number of successful extensions: 79
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of query: 71
length of database: 3,158,374
effective HSP length: 39
effective length of query: 31
effective length of database: 2,903,665
effective search space: 90013615
effective search space used: 90013615
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)