BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_7_E01_T7.seq
(180 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU06862.1 NCU06862.1 predicted protein (16576 - 14426) 30 0.093
NCU07151.1 NCU07151.1 hypothetical protein (20972 - 20293) 25 1.8
NCU00068.1 NCU00068.1 predicted protein (27370 - 23868) 25 3.0
NCU00420.1 NCU00420.1 predicted protein (1957 - 3663) 25 3.0
NCU02052.1 NCU02052.1 hypothetical protein (3192 - 8804) 25 3.0
NCU00625.1 NCU00625.1 hypothetical protein (153946 - 167238) 24 5.1
NCU01394.1 NCU01394.1 predicted protein (10941 - 6982) 23 8.7
NCU00348.1 NCU00348.1 hypothetical protein (470655 - 470052) 23 8.7
NCU06572.1 NCU06572.1 hypothetical protein (4336 - 5235) 23 8.7
NCU01349.1 NCU01349.1 hypothetical protein (188653 - 192303) 23 8.7
NCU02527.1 NCU02527.1 predicted protein (91084 - 88184) 23 8.7
NCU07840.1 NCU07840.1 hypothetical protein (7219 - 4580) 23 8.7
>NCU06862.1 NCU06862.1 predicted protein (16576 - 14426)
Length = 686
Score = 29.6 bits (65), Expect = 0.093
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 126 TCRTEHTPPRDICGKQFKLIKKIEPSTLERQQIPAKPRP 10
T R++ PP + KLIK +EP ER +P+ PRP
Sbjct: 263 TSRSKAPPPPPPSSRHGKLIK-VEPKGEERSGMPSTPRP 300
>NCU07151.1 NCU07151.1 hypothetical protein (20972 - 20293)
Length = 188
Score = 25.4 bits (54), Expect = 1.8
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = +2
Query: 11 GRGFAGICCLSSVLGSIFFISLNCLPHMSRGGVCSVLQVVNE 136
G G +GI CL + + + L S+GG C VLQ +E
Sbjct: 40 GPGNSGITCLIATIRHL-------LGFFSQGGRCKVLQFADE 74
>NCU00068.1 NCU00068.1 predicted protein (27370 - 23868)
Length = 1115
Score = 24.6 bits (52), Expect = 3.0
Identities = 13/45 (28%), Positives = 23/45 (50%), Gaps = 6/45 (13%)
Frame = -1
Query: 117 TEHTPPRDIC-GKQFKLIKKIEPST-----LERQQIPAKPRPRPR 1
T+ PR +C GK + +++ + ++R P PRPRP+
Sbjct: 432 TDELAPRFVCHGKLWTTLQQTPRGSDGSQDMDRNYTPVPPRPRPQ 476
>NCU00420.1 NCU00420.1 predicted protein (1957 - 3663)
Length = 522
Score = 24.6 bits (52), Expect = 3.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 144 KIISFTTCRTEHTPP---RDICGKQFKLIKKIEPSTLERQQIPAKPRPRP 4
+ + T + +PP R G ++I K EP + + QQ P P P P
Sbjct: 68 RAVGATPAAHKSSPPSASRSAGGSAPRIIVKKEPGSPDVQQQPPPPPPPP 117
>NCU02052.1 NCU02052.1 hypothetical protein (3192 - 8804)
Length = 1870
Score = 24.6 bits (52), Expect = 3.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 108 TPPRDICGKQFKLIKKIEPSTLERQQIPAKPRPRP 4
TPP+ C +FK + P + + I A P P P
Sbjct: 1220 TPPKKRCVVKFKSEYRTLPKSKDMVAIEAPPPPAP 1254
>NCU00625.1 NCU00625.1 hypothetical protein (153946 - 167238)
Length = 3409
Score = 23.9 bits (50), Expect = 5.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 156 CKVSKIISFTTCRTEHT 106
C+V ++ISF C T++T
Sbjct: 1149 CRVIELISFVPCATDNT 1165
>NCU01394.1 NCU01394.1 predicted protein (10941 - 6982)
Length = 1266
Score = 23.1 bits (48), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +2
Query: 95 SRGGVCSVLQVVNEMILLTLQVPA 166
S G SV + EM+LLT+ VP+
Sbjct: 566 SIAGASSVAETEIEMLLLTVDVPS 589
>NCU00348.1 NCU00348.1 hypothetical protein (470655 - 470052)
Length = 112
Score = 23.1 bits (48), Expect = 8.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 144 KIISFTTCRTEHTPPRDICGK 82
KII+ + RT+ P +CGK
Sbjct: 87 KIINLGSSRTDRCPGMGLCGK 107
>NCU06572.1 NCU06572.1 hypothetical protein (4336 - 5235)
Length = 299
Score = 23.1 bits (48), Expect = 8.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 118 STGCKRNDFAHLASTCPGAAR 180
S G KRN FA L + P AAR
Sbjct: 29 SQGKKRNAFAELMAPKPKAAR 49
>NCU01349.1 NCU01349.1 hypothetical protein (188653 - 192303)
Length = 1216
Score = 23.1 bits (48), Expect = 8.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 105 PPRDICGKQFKLIKKIEPSTLERQQIPAKPRPRPR 1
PPR Q ++ + + + Q A+ RPRPR
Sbjct: 139 PPRRPTRPQLQVQTQAQAQAQSQSQFLAQSRPRPR 173
>NCU02527.1 NCU02527.1 predicted protein (91084 - 88184)
Length = 730
Score = 23.1 bits (48), Expect = 8.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 135 SFTTCRTEHTPPRDICGKQFKLIKKIEPSTLERQQI 28
S +T + +HTP K+ + +K ST+ER I
Sbjct: 238 SDSTIKAQHTPHHQKASKESQEPEKKSVSTIERCSI 273
>NCU07840.1 NCU07840.1 hypothetical protein (7219 - 4580)
Length = 879
Score = 23.1 bits (48), Expect = 8.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 138 ISFTTCRTEHTPPRDICGKQFKLIKKI 58
IS T C + + P D C + F+ KI
Sbjct: 732 ISLTLCPSSQSSPADWCEEDFRRWHKI 758
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1083100
Number of Sequences: 6531
Number of extensions: 16892
Number of successful extensions: 48
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of query: 60
length of database: 3,158,374
effective HSP length: 35
effective length of query: 24
effective length of database: 2,929,789
effective search space: 70314936
effective search space used: 70314936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)