BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_7_E02_T7.seq
         (483 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU02003.1 NCU02003.1 ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) (63...   149  4e-37
NCU09653.1 NCU09653.1 hypothetical protein (31473 - 30796)             29  0.59
NCU08616.1 NCU08616.1 DNA-DIRECTED RNA POLYMERASE I POLYPEPTIDE ...    25  8.5
NCU08148.1 NCU08148.1 hypothetical protein (20843 - 18510)             25  8.5

>NCU02003.1 NCU02003.1 ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) (63082
           - 61334)
          Length = 482

 Score =  149 bits (376), Expect = 4e-37
 Identities = 71/91 (78%), Positives = 80/91 (87%)
 Frame = +3

Query: 21  IGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVV 200
           +G GYAPVLDCHT+HIA KFAEL+ KIDRR+GK +EA PKF+K+GDA IVKMIP+KPM V
Sbjct: 374 VGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCV 433

Query: 201 ETFATYPPLGRFAVRDMRQTVAVGVIKGVEK 293
           E F  YPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct: 434 EAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 464



>NCU09653.1 NCU09653.1 hypothetical protein (31473 - 30796)
          Length = 225

 Score = 29.3 bits (64), Expect = 0.59
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 322 LVTLAP-VGSFFSTPLMTPTATVCLMSRTAKRPRGG*VAKVSTTM 191
           + TL P VG+ F  P+M  + T+C+M+ TA     G V  V TTM
Sbjct: 133 IATLMPKVGNPFRVPVMVYSLTICVMALTALTLENGRVI-VGTTM 176



>NCU08616.1 NCU08616.1 DNA-DIRECTED RNA POLYMERASE I POLYPEPTIDE 2
           (RNA POLYMERASE I SUBUNIT
          Length = 1234

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 11/24 (45%), Positives = 12/24 (49%), Gaps = 3/24 (12%)
 Frame = +2

Query: 215 LPSSWSFCCPGHEAN---CGCWCH 277
           LP SW F CP H  +   CG   H
Sbjct: 527 LPESWGFLCPVHTPDGSPCGLLNH 550



>NCU08148.1 NCU08148.1 hypothetical protein (20843 - 18510)
          Length = 628

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = -1

Query: 189 AWWESSSLCQHHHS*GTWAGPPAPYQIAC 103
           AWW   +L  H H    W  P   Y   C
Sbjct: 115 AWWIYGALIHHRHDHLGWLKPTLVYLAIC 143



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3105361
Number of Sequences: 6531
Number of extensions: 72739
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of query: 161
length of database: 3,158,374
effective HSP length: 42
effective length of query: 118
effective length of database: 2,884,072
effective search space: 340320496
effective search space used: 340320496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)