BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_7_F08_T7.seq
(398 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09118.1 NCU09118.1 hypothetical protein (16314 - 13176) 62 5e-11
NCU01315.1 NCU01315.1 hypothetical protein ( (AL513464) related ... 27 2.2
NCU07560.1 NCU07560.1 hypothetical protein (24031 - 22690) 26 3.8
NCU01939.1 NCU01939.1 hypothetical protein (59274 - 63136) 26 5.0
NCU06930.1 NCU06930.1 predicted protein (178829 - 185763) 25 6.5
NCU08897.1 NCU08897.1 hypothetical protein (58538 - 60131) 25 6.5
NCU07753.1 NCU07753.1 predicted protein (47891 - 45370) 25 6.5
NCU10039.1 NCU10039.1 predicted protein (12990 - 12234) 25 6.5
NCU00219.1 NCU00219.1 hypothetical protein (72547 - 78425) 25 6.5
NCU09346.1 NCU09346.1 predicted protein (26004 - 33136) 25 8.5
>NCU09118.1 NCU09118.1 hypothetical protein (16314 - 13176)
Length = 923
Score = 62.4 bits (150), Expect = 5e-11
Identities = 28/46 (60%), Positives = 35/46 (75%)
Frame = -1
Query: 383 RSVALGTSKINYLDPRITVAWCKTHEVPIEKIFSKTILAKFGWAMD 246
+ VALGTSKINY+DPR+TV + VPIEK FSKT+ KF WA++
Sbjct: 868 KEVALGTSKINYIDPRLTVVFSAKFNVPIEKFFSKTLREKFKWAIE 913
>NCU01315.1 NCU01315.1 hypothetical protein ( (AL513464) related to
UDP-N-ACETYLGLUCOSAMINE-
Length = 1519
Score = 26.9 bits (58), Expect = 2.2
Identities = 21/83 (25%), Positives = 30/83 (35%), Gaps = 4/83 (4%)
Frame = -2
Query: 322 GAKPMKSLLRRFSARQFLQSLDGQWTSSRISDSKSIGIRVSQWPLGKFDSASRPSPGPLT 143
G P+K + +R F ++D + S S + + WP P PLT
Sbjct: 133 GPPPLKQMALPRPSRLFPSTVDQGLSGSSTSSNLQHSVPAGSWPY----------PAPLT 182
Query: 142 ATSSKGRARCLFLKS----PCSW 86
+ S L LKS P W
Sbjct: 183 SGSLASATETLSLKSGSVTPLGW 205
>NCU07560.1 NCU07560.1 hypothetical protein (24031 - 22690)
Length = 368
Score = 26.2 bits (56), Expect = 3.8
Identities = 20/55 (36%), Positives = 27/55 (48%), Gaps = 4/55 (7%)
Frame = +3
Query: 42 EKKKPTKK-MPGASIFQEQGDFKNKHRALP---LLLVAVRGPGEGLEAESNLPRG 194
E + P +K MP + E+GD K RAL L+V + EG EA+ P G
Sbjct: 206 EDRVPVEKPMPRRTEADEKGDVKRLDRALDKTLYLVVKKKADKEGEEAKWMFPTG 260
>NCU01939.1 NCU01939.1 hypothetical protein (59274 - 63136)
Length = 1047
Score = 25.8 bits (55), Expect = 5.0
Identities = 12/41 (29%), Positives = 21/41 (50%)
Frame = -1
Query: 383 RSVALGTSKINYLDPRITVAWCKTHEVPIEKIFSKTILAKF 261
+ V L S + YL R+ AW ++ + P E + + A+F
Sbjct: 49 QDVNLKLSTVIYLKNRVNRAWQRSDDYPQEAVLDEDAKARF 89
>NCU06930.1 NCU06930.1 predicted protein (178829 - 185763)
Length = 2221
Score = 25.4 bits (54), Expect = 6.5
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 3/72 (4%)
Frame = -2
Query: 322 GAKPMKSLLRRFSA---RQFLQSLDGQWTSSRISDSKSIGIRVSQWPLGKFDSASRPSPG 152
G P+K R +A RQ L++ G+ + ++G V P G F + ++ PG
Sbjct: 1431 GVIPLKQWQGRSAATGGRQPLRARKGERVGPAGATDLTMGTVV---PAGLFANVTQGGPG 1487
Query: 151 PLTATSSKGRAR 116
P T ++K A+
Sbjct: 1488 PATTAATKTAAK 1499
>NCU08897.1 NCU08897.1 hypothetical protein (58538 - 60131)
Length = 476
Score = 25.4 bits (54), Expect = 6.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 198 WLTRMPILLESEIRLDVHCPSKLCKNCLAENLLNRDF 308
+ + MPI+L+S + +V S++ + +ENLL R F
Sbjct: 287 YTSNMPIMLQSALSSNVFLISQMLYSRFSENLLVRLF 323
>NCU07753.1 NCU07753.1 predicted protein (47891 - 45370)
Length = 814
Score = 25.4 bits (54), Expect = 6.5
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -2
Query: 316 KPMKSLLRRFSARQFLQSLDGQWTSSRISDSKSIGIRVSQWPLGKFDSASRPSPGPLTAT 137
+P +L R FS S G +SSR+ RV +W + + +S P P + +
Sbjct: 62 RPSSALSRSFSPLS-PPSPSGSSSSSRMMGGGKSTQRVKEWVIKRSNSTREPRSKPGSRS 120
Query: 136 SSKGRA 119
SS +
Sbjct: 121 SSNSNS 126
>NCU10039.1 NCU10039.1 predicted protein (12990 - 12234)
Length = 219
Score = 25.4 bits (54), Expect = 6.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 111 KHRALPLLLVAVRGPGEGLEAESNLPRGHWL-TRMPILLESE 233
K R P + V+G G+G+ A ++ +G L +P LL SE
Sbjct: 82 KQRETPYQITDVKGKGKGVVATRSIKQGEILMVDVPALLISE 123
>NCU00219.1 NCU00219.1 hypothetical protein (72547 - 78425)
Length = 1826
Score = 25.4 bits (54), Expect = 6.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 187 GKFDSASRPSPGPLTATSSKGRARCLFLKSPCS 89
G D + P PGP +K RAR K+P S
Sbjct: 808 GAADEETTPKPGPQLTHMTKNRARGPRRKAPTS 840
>NCU09346.1 NCU09346.1 predicted protein (26004 - 33136)
Length = 2295
Score = 25.0 bits (53), Expect = 8.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = -3
Query: 321 VQNP*SPY*EDFQQDNSCKVWM----GNGRRAGFQIL 223
+QN P DFQ + CK W+ NGR F L
Sbjct: 792 LQNIRGPTVPDFQTVHECKTWLETVTKNGRMLSFMAL 828
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2504538
Number of Sequences: 6531
Number of extensions: 53161
Number of successful extensions: 161
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of query: 132
length of database: 3,158,374
effective HSP length: 42
effective length of query: 90
effective length of database: 2,884,072
effective search space: 259566480
effective search space used: 259566480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)