BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_7_H09_T7.seq
(651 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09063.1 NCU09063.1 hypothetical protein (54833 - 59969) 32 0.10
NCU08021.1 NCU08021.1 hypothetical protein (173649 - 177484) 31 0.22
NCU08543.1 NCU08543.1 predicted protein (54993 - 57294) 30 0.65
NCU00396.1 NCU00396.1 hypothetical protein (118947 - 124515) 30 0.65
NCU09357.1 NCU09357.1 hypothetical protein (75486 - 82742) 28 1.5
NCU00085.1 NCU00085.1 predicted protein (7673 - 4965) 28 1.9
NCU09915.1 NCU09915.1 related to meiosis-specific protein NDT80 ... 28 1.9
NCU01527.1 NCU01527.1 predicted protein (84871 - 87487) 28 1.9
NCU01632.1 NCU01632.1 hypothetical protein (6016 - 1261) 27 3.2
NCU09191.1 NCU09191.1 hypothetical protein (214 - 3507) 27 3.2
NCU01214.1 NCU01214.1 hypothetical protein (196456 - 198606) 27 4.2
NCU01543.1 NCU01543.1 hypothetical protein (19493 - 22219) 27 4.2
NCU09930.1 NCU09930.1 probable multifunctional folic acid synthe... 27 4.2
NCU06528.1 NCU06528.1 hypothetical protein (17548 - 13438) 27 4.2
NCU02656.1 NCU02656.1 predicted protein (32482 - 29401) 27 5.5
NCU02352.1 NCU02352.1 hypothetical protein (11129 - 9822) 27 5.5
NCU08214.1 NCU08214.1 predicted protein (65967 - 64856) 26 7.2
NCU02594.1 NCU02594.1 predicted protein (26781 - 22713) 26 9.4
NCU09866.1 NCU09866.1 hypothetical protein (26008 - 32123) 26 9.4
>NCU09063.1 NCU09063.1 hypothetical protein (54833 - 59969)
Length = 1644
Score = 32.3 bits (72), Expect = 0.10
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = -2
Query: 635 VIAEYTVRTLQRTVPAAVPAIVFLSGGQSEEEATL-NLNAMNKLETKKPWNLSFSFGRAL 459
V AE T++ + + IVFL EEEA L + K +T+K +S A
Sbjct: 641 VEAEETIQNCTKEIERRQKDIVFLEKKVKEEEAELATIRESLKGKTQK-----YSDQIAA 695
Query: 458 QQSTLKAWAGKVENEQKARKAFLVRCKANSEATLGTYKGDATLGEGASESLHVK 297
+Q +L+ W K+ +Q A A +E+ L + A G A E + K
Sbjct: 696 KQKSLEPWKDKINQKQSA--------IAVAESELAILREKANAGTVALEEMETK 741
>NCU08021.1 NCU08021.1 hypothetical protein (173649 - 177484)
Length = 1256
Score = 31.2 bits (69), Expect = 0.22
Identities = 16/36 (44%), Positives = 22/36 (60%)
Frame = -3
Query: 373 TLRPPSAPTRAMPPSARGPLRASTSRTTSTDLPSVR 266
T PP APT +P +R P ++S + TS + PSVR
Sbjct: 47 TASPPIAPTSVLPRPSR-PSQSSAAERTSPESPSVR 81
>NCU08543.1 NCU08543.1 predicted protein (54993 - 57294)
Length = 706
Score = 29.6 bits (65), Expect = 0.65
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 346 RAMPPSAR-GPLRASTSRTTSTDLPSVRWPVWVSCLPVLSFGFQ 218
+AMP R PL++ST RT +T PSV + + P SF FQ
Sbjct: 277 QAMPAPLRISPLKSSTRRTANTIPPSVSARGFQAKPPTRSFSFQ 320
>NCU00396.1 NCU00396.1 hypothetical protein (118947 - 124515)
Length = 1271
Score = 29.6 bits (65), Expect = 0.65
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = +3
Query: 531 QGRLLLALSTREEDNGWDGSRDSPLEGADGVLSNHLR 641
+G ++ LS E + GW+ S + LEG G+ +N+LR
Sbjct: 738 KGFMMTPLSYTELEYGWNFSSEQCLEGMVGIHANYLR 774
>NCU09357.1 NCU09357.1 hypothetical protein (75486 - 82742)
Length = 2313
Score = 28.5 bits (62), Expect = 1.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 55 QQNYTTIVEQKPPLRFTIRSTRVTGYSTPKTKLPKLF*E 171
QQNY + ++PP+++++ + T KT + KL+ E
Sbjct: 1596 QQNYKRELAEQPPIQYSLNKVFLGNPGTGKTTVAKLYGE 1634
>NCU00085.1 NCU00085.1 predicted protein (7673 - 4965)
Length = 902
Score = 28.1 bits (61), Expect = 1.9
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 2/35 (5%)
Frame = -3
Query: 373 TLRPPSAPTR--AMPPSARGPLRASTSRTTSTDLP 275
T+ PP +P A PP+A RA RTT+ LP
Sbjct: 474 TVTPPLSPGHVDASPPAANNNYRAPAHRTTANALP 508
>NCU09915.1 NCU09915.1 related to meiosis-specific protein NDT80
[MIPS] (5110 - 3584)
Length = 508
Score = 28.1 bits (61), Expect = 1.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 214 DSENQTIILVSRTPKQATAPKA 279
DS+NQTI LV TPK+ P A
Sbjct: 191 DSDNQTIELVQHTPKRDKGPVA 212
>NCU01527.1 NCU01527.1 predicted protein (84871 - 87487)
Length = 763
Score = 28.1 bits (61), Expect = 1.9
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 335 WHRPCRCRGWPQSWPCTSPGTP--SWPSARSPP 427
W R R R P+S P SP P S P RSPP
Sbjct: 236 WRRQDRSRSRPRSPPPRSPSPPRRSPPPRRSPP 268
>NCU01632.1 NCU01632.1 hypothetical protein (6016 - 1261)
Length = 1563
Score = 27.3 bits (59), Expect = 3.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 570 DNGWDGSRDSPLEGADGVLSNHLRGHL 650
+ GW+G R + LE + V+ N+ GH+
Sbjct: 907 ERGWEGFRKAELELLEDVIKNNPTGHI 933
>NCU09191.1 NCU09191.1 hypothetical protein (214 - 3507)
Length = 1097
Score = 27.3 bits (59), Expect = 3.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 450 ALLEGTPEGEGQVPWLLGL 506
ALL PEGEGQ P +GL
Sbjct: 131 ALLRNVPEGEGQEPQRIGL 149
>NCU01214.1 NCU01214.1 hypothetical protein (196456 - 198606)
Length = 677
Score = 26.9 bits (58), Expect = 4.2
Identities = 19/66 (28%), Positives = 23/66 (34%)
Frame = -3
Query: 472 SGVPSSRAPSRPGLXXXXXXXXXXXXXXXXXXPTLRPPSAPTRAMPPSARGPLRASTSRT 293
SG PSS + S PGL T P P+ + PS+ G T
Sbjct: 78 SGCPSSLS-SIPGLSCSSQPGSNATSSATSTAYTFSNPPLPSSSPVPSSSGTTFPPAVST 136
Query: 292 TSTDLP 275
T T P
Sbjct: 137 TQTGSP 142
>NCU01543.1 NCU01543.1 hypothetical protein (19493 - 22219)
Length = 793
Score = 26.9 bits (58), Expect = 4.2
Identities = 11/26 (42%), Positives = 13/26 (49%)
Frame = +2
Query: 365 PQSWPCTSPGTPSWPSARSPPCQPRP 442
PQ P PG P P+ + P QP P
Sbjct: 309 PQQPPQQQPGQPQQPTQQQPQVQPGP 334
>NCU09930.1 NCU09930.1 probable multifunctional folic acid synthesis
protein [MIPS] (3878 -
Length = 617
Score = 26.9 bits (58), Expect = 4.2
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +3
Query: 291 VVLDVEALRGPLAEGGIALVGAE-------GGLRVGLAPHQERLPGLLLVLHLASPGLEG 449
V++ V+ R +AE +A GA+ G + + P RL + ++H+
Sbjct: 423 VLISVDTYRASVAEAAVA-AGADIVNDVSGGSMDPDMLPTVARLGSTICLMHMRGTPANM 481
Query: 450 ALLEGTPEGEGQVPWLLGLELV 515
+ L PE EG + + ELV
Sbjct: 482 SSLNEYPEAEGGLIGGIAKELV 503
>NCU06528.1 NCU06528.1 hypothetical protein (17548 - 13438)
Length = 1049
Score = 26.9 bits (58), Expect = 4.2
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 301 TWRLSEAPSPRVASPL*VPRVASELALHLTRNAF--LAFCSFSTLPAQAL 444
+W+ S P+PR SP V +++ EL ++ + LAF S+ P +
Sbjct: 415 SWQASPTPAPRSPSP--VSKLSEELTATISNHVINQLAFSRLSSTPLSTI 462
>NCU02656.1 NCU02656.1 predicted protein (32482 - 29401)
Length = 1005
Score = 26.6 bits (57), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +3
Query: 579 WDGSRDSPLEGADGVLSNHLRGHL 650
W+G +DS L+G HLRG+L
Sbjct: 531 WNGEQDSSLDGEHPGSYGHLRGNL 554
>NCU02352.1 NCU02352.1 hypothetical protein (11129 - 9822)
Length = 435
Score = 26.6 bits (57), Expect = 5.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 364 PPSAPTRAMPPSARGPLRASTSRTTSTDLPSVRWPVWVSCLPVLSFG 224
PPSA A +A P + T TTS P +R + PVL +G
Sbjct: 59 PPSAAAAAAAAAAAPPTTSGTPSTTSWIRPFLRG----TAAPVLGYG 101
>NCU08214.1 NCU08214.1 predicted protein (65967 - 64856)
Length = 296
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 407 PSARSPPCQPRP*GCSAGGHARRRRTGSMA 496
PS R PP PRP + G ARR+R G A
Sbjct: 230 PSRRLPPPLPRPSDATIRG-ARRQRLGQSA 258
>NCU02594.1 NCU02594.1 predicted protein (26781 - 22713)
Length = 1176
Score = 25.8 bits (55), Expect = 9.4
Identities = 10/29 (34%), Positives = 16/29 (54%)
Frame = +3
Query: 525 QVQGRLLLALSTREEDNGWDGSRDSPLEG 611
Q QG+ + ++ NGW SR+ P+ G
Sbjct: 329 QAQGQQKKKRTEQKPQNGWSHSRNDPIHG 357
>NCU09866.1 NCU09866.1 hypothetical protein (26008 - 32123)
Length = 1933
Score = 25.8 bits (55), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 364 PPSAPTRAMPPSARGPLRASTSRTT 290
PPS+ + PP A P +AS SR++
Sbjct: 1139 PPSSRSTPAPPPAAAPAQASGSRSS 1163
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4532291
Number of Sequences: 6531
Number of extensions: 117400
Number of successful extensions: 558
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of query: 217
length of database: 3,158,374
effective HSP length: 44
effective length of query: 172
effective length of database: 2,871,010
effective search space: 493813720
effective search space used: 493813720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)