BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_D02_T7.seq
(465 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU08409.1 NCU08409.1 TRYPTOPHAN SYNTHASE (32025 - 34299) 52 8e-08
NCU07964.1 NCU07964.1 hypothetical protein (52443 - 53368) 29 0.56
NCU01522.1 NCU01522.1 predicted protein (72112 - 67772) 28 1.6
NCU08868.1 NCU08868.1 predicted protein (19434 - 16596) 27 2.1
NCU07230.1 NCU07230.1 hypothetical protein (6270 - 4403) 27 2.1
NCU01420.1 NCU01420.1 predicted protein (15564 - 14270) 27 3.6
NCU06484.1 NCU06484.1 hypothetical protein (33496 - 27573) 27 3.6
NCU02253.1 NCU02253.1 predicted protein (25537 - 26671) 26 4.7
NCU06550.1 NCU06550.1 hypothetical protein ( (AF309689) Snz-type... 26 4.7
NCU06638.1 NCU06638.1 hypothetical protein (13218 - 17185) 26 6.2
NCU08961.1 NCU08961.1 hypothetical protein (4670 - 1527) 26 6.2
NCU09836.1 NCU09836.1 predicted protein (60100 - 58922) 25 8.1
>NCU08409.1 NCU08409.1 TRYPTOPHAN SYNTHASE (32025 - 34299)
Length = 708
Score = 52.0 bits (123), Expect = 8e-08
Identities = 29/67 (43%), Positives = 43/67 (63%), Gaps = 1/67 (1%)
Frame = +1
Query: 28 FVYLVSTTGVTGTRANVSFKVEALLKEIKQVT-DKAVAVGFGVSTPEQVKQIAGWGADGV 204
F+Y+VS GVTG ++ + LL +K+ + +K AVGFGVST + Q+ G ADGV
Sbjct: 173 FIYVVSRQGVTGASGTLNANLPELLARVKKYSGNKPAAVGFGVSTHDHFTQV-GAIADGV 231
Query: 205 IVGSAMV 225
+VGS ++
Sbjct: 232 VVGSMII 238
>NCU07964.1 NCU07964.1 hypothetical protein (52443 - 53368)
Length = 289
Score = 29.3 bits (64), Expect = 0.56
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = -2
Query: 311 HGNAAFRLLANSSSFFNPSSGEP 243
HG AAF+L+ ++ FF GEP
Sbjct: 130 HGTAAFKLIREAAPFFRVKDGEP 152
>NCU01522.1 NCU01522.1 predicted protein (72112 - 67772)
Length = 1411
Score = 27.7 bits (60), Expect = 1.6
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = -2
Query: 245 PDSPNCLTIALPTITPSAPQPAICFTCSGVDTPKPTATALSVTCLISLRRASTLKL 78
P +PN LT LP T +AP A T +GV P TA +V ++S+ S K+
Sbjct: 277 PSTPNGLTRPLPQSTRAAPPIASRPTSAGVRKPL-TAKRTAVKKMVSVNIFSAGKV 331
>NCU08868.1 NCU08868.1 predicted protein (19434 - 16596)
Length = 664
Score = 27.3 bits (59), Expect = 2.1
Identities = 22/79 (27%), Positives = 36/79 (44%), Gaps = 2/79 (2%)
Frame = -2
Query: 353 IHAISPHKG*KCLFHGNAAFRL--LANSSSFFNPSSGEPDSPNCLTIALPTITPSAPQPA 180
IH+ SPH +H F L S + + PSS +P N L T P++P P
Sbjct: 86 IHSYSPHD-----WHKGQPFEPAGLLPSPTGWTPSSPQPIIVNQHHYYLGTPGPNSPPPQ 140
Query: 179 ICFTCSGVDTPKPTATALS 123
+ + + PK + ++L+
Sbjct: 141 LIQSIPPIPPPKNSTSSLN 159
>NCU07230.1 NCU07230.1 hypothetical protein (6270 - 4403)
Length = 495
Score = 27.3 bits (59), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 2/59 (3%)
Frame = -2
Query: 287 LANSSSFFNPSSGEPDSPNCLTIALPTITPSAPQ--PAICFTCSGVDTPKPTATALSVT 117
++ ++ NPSS PD+ + P PS + PA+ + +PK T+T LS T
Sbjct: 8 VSTPTAVHNPSSSGPDASQNAPVDAPNAPPSPTESGPAV----ESLLSPKRTSTQLSST 62
>NCU01420.1 NCU01420.1 predicted protein (15564 - 14270)
Length = 384
Score = 26.6 bits (57), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 224 TIALPTITPSAPQPAICFTCSGVDTPKP 141
T+ P+ + +AP PA+C C+ D P P
Sbjct: 30 TVDSPSASAAAPAPALCDNCTS-DRPTP 56
>NCU06484.1 NCU06484.1 hypothetical protein (33496 - 27573)
Length = 1955
Score = 26.6 bits (57), Expect = 3.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 197 SAPQPAICFTCSGVDTPKPTATALSVTCLISLRRAS 90
+AP PA GV TP PT + S +S A+
Sbjct: 1850 AAPGPAAVAAARGVPTPAPTVVSASAPSAVSANVAA 1885
>NCU02253.1 NCU02253.1 predicted protein (25537 - 26671)
Length = 275
Score = 26.2 bits (56), Expect = 4.7
Identities = 14/36 (38%), Positives = 20/36 (54%), Gaps = 3/36 (8%)
Frame = -2
Query: 281 NSSSFFNPSSGEPDSPNCLTIALP---TITPSAPQP 183
+SS+ NPS G P+S N I+ P +T + P P
Sbjct: 54 SSSTSINPSHGGPNSSNNAPISTPAPGAVTGTTPLP 89
>NCU06550.1 NCU06550.1 hypothetical protein ( (AF309689) Snz-type
pyridoxine vitamin B6 bios
Length = 308
Score = 26.2 bits (56), Expect = 4.7
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +1
Query: 148 GVSTPEQVKQIAGWGADGVIVGSAMVR 228
GV+TP + +G DGV VGS + +
Sbjct: 224 GVATPADAALMMEFGCDGVFVGSGIFK 250
>NCU06638.1 NCU06638.1 hypothetical protein (13218 - 17185)
Length = 1300
Score = 25.8 bits (55), Expect = 6.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 260 PSSGEPDSPNCLTIALPTITPS---APQPAICFTCSGVDTPKPT 138
P +G+PD+ ++PT PS AP+PA + + P PT
Sbjct: 548 PKTGDPDA------SVPTQKPSGPRAPKPAAAKSSTAKSPPPPT 585
>NCU08961.1 NCU08961.1 hypothetical protein (4670 - 1527)
Length = 1018
Score = 25.8 bits (55), Expect = 6.2
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = -2
Query: 284 ANSSSFFNPSSGEPDSPNCLTIALPTITPSAPQPAI 177
++S++ NP S S N LT + T +AP PAI
Sbjct: 58 SSSAATVNPRSDPWSSSNKLTSQTTSATSAAPAPAI 93
>NCU09836.1 NCU09836.1 predicted protein (60100 - 58922)
Length = 392
Score = 25.4 bits (54), Expect = 8.1
Identities = 13/32 (40%), Positives = 16/32 (49%)
Frame = -2
Query: 212 PTITPSAPQPAICFTCSGVDTPKPTATALSVT 117
P PSAP PA F + TP P+ +S T
Sbjct: 122 PKPFPSAPFPAQTFQATNPSTPFPSHGTVSAT 153
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2691998
Number of Sequences: 6531
Number of extensions: 52977
Number of successful extensions: 179
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of query: 155
length of database: 3,158,374
effective HSP length: 42
effective length of query: 112
effective length of database: 2,884,072
effective search space: 323016064
effective search space used: 323016064
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)