BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_D06_T7.seq
(474 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU10025.1 NCU10025.1 hypothetical protein (12748 - 10910) 32 0.088
NCU06457.1 NCU06457.1 hypothetical protein (149960 - 151760) 29 0.75
NCU00303.1 NCU00303.1 hypothetical protein (305075 - 304082) 29 0.75
NCU02102.1 NCU02102.1 hypothetical protein (12691 - 8945) 28 0.98
NCU02242.1 NCU02242.1 predicted protein (22706 - 24027) 28 1.3
NCU06871.1 NCU06871.1 hypothetical protein (11146 - 5140) 28 1.7
NCU07005.1 NCU07005.1 hypothetical protein (8679 - 7417) 27 2.8
NCU08417.1 NCU08417.1 predicted protein (56918 - 52131) 27 2.8
NCU01675.1 NCU01675.1 hypothetical protein ( hypothetical protei... 27 2.8
NCU01846.1 NCU01846.1 predicted protein (2454 - 1150) 27 3.7
NCU09176.1 NCU09176.1 predicted protein (74998 - 76210) 27 3.7
NCU02568.1 NCU02568.1 predicted protein (212402 - 211405) 26 4.8
NCU09019.1 NCU09019.1 predicted protein (5607 - 3912) 26 4.8
NCU09099.1 NCU09099.1 predicted protein (103304 - 104155) 26 4.8
NCU09315.1 NCU09315.1 hypothetical protein (39822 - 37600) 26 6.3
NCU02111.1 NCU02111.1 hypothetical protein (39586 - 43512) 26 6.3
NCU08887.1 NCU08887.1 predicted protein (19964 - 15681) 25 8.3
NCU02020.1 NCU02020.1 hypothetical protein (119956 - 122841) 25 8.3
NCU01615.1 NCU01615.1 hypothetical protein ( hypothetical protei... 25 8.3
NCU09716.1 NCU09716.1 predicted protein (52829 - 55037) 25 8.3
NCU08962.1 NCU08962.1 predicted protein (14714 - 12593) 25 8.3
NCU02324.1 NCU02324.1 predicted protein (10636 - 14607) 25 8.3
NCU09120.1 NCU09120.1 hypothetical protein (9950 - 5720) 25 8.3
>NCU10025.1 NCU10025.1 hypothetical protein (12748 - 10910)
Length = 522
Score = 32.0 bits (71), Expect = 0.088
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 15/49 (30%)
Frame = -2
Query: 110 GLPALLTVPR-----------HRKLSPRRISGLPPAPPP----CSTCGR 9
G+PA+ TVP H P+ G PP PPP CSTC +
Sbjct: 174 GIPAMPTVPGVPSNNGMVPSLHPSYKPQVEGGAPPGPPPKAYACSTCAK 222
>NCU06457.1 NCU06457.1 hypothetical protein (149960 - 151760)
Length = 580
Score = 28.9 bits (63), Expect = 0.75
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 125 DGPS--EASSSAMRDLESKLDATTKECLAEKEQNRKLTVENEKLQYRVSHL 271
DGP+ EA+ SAM+ ++D K+ EKE +K E E+ Q R+ +L
Sbjct: 68 DGPTWEEAAKSAMKKAVGRVDQYKKKLQKEKEALKK---EEEERQQRLKNL 115
>NCU00303.1 NCU00303.1 hypothetical protein (305075 - 304082)
Length = 255
Score = 28.9 bits (63), Expect = 0.75
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 1 SSGRPQVEHGGGAGGSP 51
S GRP HGGG GG P
Sbjct: 198 SEGRPNQHHGGGGGGYP 214
>NCU02102.1 NCU02102.1 hypothetical protein (12691 - 8945)
Length = 809
Score = 28.5 bits (62), Expect = 0.98
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = -1
Query: 282 IVRMRWETRYWSFSFSTVSFRFCSFSARH 196
++R +W TR W++ +S R FS RH
Sbjct: 667 VIRSKWATRGWTYQEGLLSKRRLIFSDRH 695
>NCU02242.1 NCU02242.1 predicted protein (22706 - 24027)
Length = 362
Score = 28.1 bits (61), Expect = 1.3
Identities = 13/29 (44%), Positives = 16/29 (54%)
Frame = -2
Query: 113 AGLPALLTVPRHRKLSPRRISGLPPAPPP 27
+G PAL + R R + RISG P P P
Sbjct: 133 SGNPALSNLLRQRHVGSNRISGYKPTPTP 161
>NCU06871.1 NCU06871.1 hypothetical protein (11146 - 5140)
Length = 1955
Score = 27.7 bits (60), Expect = 1.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 327 LVNLVLFWIRERRSSRKPVYVLR 395
L +++LFW+R R R P+Y L+
Sbjct: 1823 LHSVILFWLRPSRQIRAPIYSLK 1845
>NCU07005.1 NCU07005.1 hypothetical protein (8679 - 7417)
Length = 420
Score = 26.9 bits (58), Expect = 2.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 351 IRERRSSRKPVYVLRLDDCWSWFKLS 428
+ R S RK Y+ + + W+WFK S
Sbjct: 228 LANRESPRKDWYISQTVEAWNWFKQS 253
>NCU08417.1 NCU08417.1 predicted protein (56918 - 52131)
Length = 1578
Score = 26.9 bits (58), Expect = 2.8
Identities = 15/34 (44%), Positives = 17/34 (49%)
Frame = -2
Query: 107 LPALLTVPRHRKLSPRRISGLPPAPPPCSTCGRP 6
LPAL T+PR S IS + PPP G P
Sbjct: 290 LPALETLPRTGSGSSMSISSMLGGPPPARDPGVP 323
>NCU01675.1 NCU01675.1 hypothetical protein ( hypothetical protein
B1D1.160 [imported] - Neu
Length = 1275
Score = 26.9 bits (58), Expect = 2.8
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -2
Query: 173 LTQDLS-WQMNLPQRGHLCSAAGLPALLTVPRH--RKLSPRRISGLPPAPPPCSTCGRP 6
L QD + W++ Q G + AGL AL PR RK + + + PPP + P
Sbjct: 118 LAQDATQWELGTAQIGPRRAVAGLLALALDPRPKVRKRAQEALRNILKNPPPSPSLDHP 176
>NCU01846.1 NCU01846.1 predicted protein (2454 - 1150)
Length = 434
Score = 26.6 bits (57), Expect = 3.7
Identities = 12/29 (41%), Positives = 14/29 (47%)
Frame = -2
Query: 104 PALLTVPRHRKLSPRRISGLPPAPPPCST 18
P + T SP S +PP PPP ST
Sbjct: 55 PPISTTSSALPTSPSSSSAVPPPPPPSST 83
>NCU09176.1 NCU09176.1 predicted protein (74998 - 76210)
Length = 353
Score = 26.6 bits (57), Expect = 3.7
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -2
Query: 185 LRQALTQDLSWQMNLPQRGH---LCSAAGLPALLTVPRHRKLSPRRISGLPPAPP 30
L+ +T +S LP L SA G P T+P LS +SG P PP
Sbjct: 30 LKPTITMSMSPHYTLPTSKAGTPLNSAPGTPVSGTLPSLSSLSSLSVSGGYPVPP 84
>NCU02568.1 NCU02568.1 predicted protein (212402 - 211405)
Length = 200
Score = 26.2 bits (56), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -2
Query: 110 GLPALLTVPRHRKLSPRRISGLPPAPPP 27
G PA+LT P ++ P G+ P PPP
Sbjct: 75 GNPAVLTRPGSQQQQPYGNYGMYPVPPP 102
>NCU09019.1 NCU09019.1 predicted protein (5607 - 3912)
Length = 65
Score = 26.2 bits (56), Expect = 4.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 373 ANLSMCSVLTTVGVGLNCHSEVDEMCLVPRP 465
A+ +C + T+ + C E+CLVPRP
Sbjct: 10 ADSILCYRICTISYRVGCWDYSIEVCLVPRP 40
>NCU09099.1 NCU09099.1 predicted protein (103304 - 104155)
Length = 283
Score = 26.2 bits (56), Expect = 4.8
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 191 WWLRQALTQDLSWQMNLPQRGHLCSA-AGLPALLTVPRHRKLSPRRISGLPPAPPPCSTC 15
W T + + P LC A + + +T+P + P SG PP PPP ++
Sbjct: 57 WTTSTVYTTAVHTITSCPPAVTLCPAHSTVVTTVTIPVSTTVCPVS-SGTPPPPPPPASS 115
Query: 14 GRP 6
G P
Sbjct: 116 GSP 118
>NCU09315.1 NCU09315.1 hypothetical protein (39822 - 37600)
Length = 718
Score = 25.8 bits (55), Expect = 6.3
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = -2
Query: 140 PQRGHLCSAAGLPALLTVPRHRKLSPRRISGLPPAPPP 27
P+ + + G PAL P + +P + GLPP P P
Sbjct: 416 PKPAPIITTLGTPAL--DPLQKAAAPLQTPGLPPPPSP 451
>NCU02111.1 NCU02111.1 hypothetical protein (39586 - 43512)
Length = 1235
Score = 25.8 bits (55), Expect = 6.3
Identities = 13/45 (28%), Positives = 20/45 (43%)
Frame = -2
Query: 140 PQRGHLCSAAGLPALLTVPRHRKLSPRRISGLPPAPPPCSTCGRP 6
P H +AA A ++P H + + PP PPP + +P
Sbjct: 1032 PVPAHPGAAATPAAAKSLPSHTRQQSSTSTVRPPPPPPPAPAAKP 1076
>NCU08887.1 NCU08887.1 predicted protein (19964 - 15681)
Length = 1067
Score = 25.4 bits (54), Expect = 8.3
Identities = 15/32 (46%), Positives = 16/32 (49%), Gaps = 4/32 (12%)
Frame = +1
Query: 1 SSGRPQVE----HGGGAGGSPEILRGESFRCR 84
S GR + E GGG GGS RG S R R
Sbjct: 819 SEGRARGEGGGGGGGGGGGSTRTARGSSSRAR 850
>NCU02020.1 NCU02020.1 hypothetical protein (119956 - 122841)
Length = 961
Score = 25.4 bits (54), Expect = 8.3
Identities = 11/38 (28%), Positives = 16/38 (41%)
Frame = -2
Query: 140 PQRGHLCSAAGLPALLTVPRHRKLSPRRISGLPPAPPP 27
P+R A + +P+ + L P PP PPP
Sbjct: 622 PERERELRAEDEDRITALPQQKYLQPHHFPPPPPGPPP 659
>NCU01615.1 NCU01615.1 hypothetical protein ( hypothetical protein
B2O8.180 [imported] - Neu
Length = 980
Score = 25.4 bits (54), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Frame = -2
Query: 62 RRISGLPPAPPPCST---CGR 9
R++SG P PP C T CGR
Sbjct: 198 RKVSGAPGIPPCCKTKYFCGR 218
>NCU09716.1 NCU09716.1 predicted protein (52829 - 55037)
Length = 685
Score = 25.4 bits (54), Expect = 8.3
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 139 GKFICHERS*VKA*RNHQRMSC*EGTEPEAD 231
GK H R+ VK R H R C G EP D
Sbjct: 581 GKDRAHARTLVKWLRGHARPPCSYGGEPRID 611
>NCU08962.1 NCU08962.1 predicted protein (14714 - 12593)
Length = 684
Score = 25.4 bits (54), Expect = 8.3
Identities = 16/58 (27%), Positives = 29/58 (49%)
Frame = +2
Query: 125 DGPSEASSSAMRDLESKLDATTKECLAEKEQNRKLTVENEKLQYRVSHLIRTIKEAES 298
+ SE+ M L+S+LD T+E +E+ + + E L+ + R ++E ES
Sbjct: 106 EASSESHKRQMDILQSRLDDATREQAKLEEKVHENEEQIEALKNEKREISRQMREMES 163
>NCU02324.1 NCU02324.1 predicted protein (10636 - 14607)
Length = 1272
Score = 25.4 bits (54), Expect = 8.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 4 SGRPQVEHGGGAGGSPEILRGESFRCRGTVSKAGSPAAEQR 126
+GRP+ G G+ GSP G R S + S + +
Sbjct: 1069 AGRPRAGSGSGSNGSPTRTTGRRLGGRARSSSSSSSSTSNK 1109
>NCU09120.1 NCU09120.1 hypothetical protein (9950 - 5720)
Length = 1374
Score = 25.4 bits (54), Expect = 8.3
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 196 MSC*EGTEPEADRGEREAPVSCLPSHPDNQRGGVKIEKPLISWSS*T*SYFGF 354
+ C +G + EAD P+ L + G +K E PL W S GF
Sbjct: 922 IECEDGFKVEADFVVNTIPLGVL------KHGNIKFEPPLPEWKSSAIERIGF 968
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2844181
Number of Sequences: 6531
Number of extensions: 61790
Number of successful extensions: 302
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of query: 158
length of database: 3,158,374
effective HSP length: 42
effective length of query: 115
effective length of database: 2,884,072
effective search space: 331668280
effective search space used: 331668280
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)