BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_D08_T7.seq
(540 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07286.1 NCU07286.1 hypothetical protein (26778 - 26177) 74 3e-14
NCU09480.1 NCU09480.1 hypothetical protein (8066 - 7117) 39 3e-08
NCU01951.1 NCU01951.1 hypothetical protein (41396 - 47277) 27 3.4
NCU02053.1 NCU02053.1 hypothetical protein (14246 - 10203) 27 4.4
NCU07870.1 NCU07870.1 hypothetical protein (119693 - 115114) 27 4.4
NCU06407.1 NCU06407.1 hypothetical protein (8369 - 4914) 27 4.4
NCU00513.1 NCU00513.1 hypothetical protein (65907 - 64589) 27 4.4
NCU01176.1 NCU01176.1 predicted protein (71832 - 67619) 26 5.8
NCU07517.1 NCU07517.1 hypothetical protein (16390 - 14741) 26 5.8
NCU07355.1 NCU07355.1 hypothetical protein (37691 - 36179) 26 5.8
NCU08152.1 NCU08152.1 hypothetical protein (34695 - 36583) 26 7.5
NCU07339.1 NCU07339.1 predicted protein (136554 - 135802) 26 7.5
NCU01833.1 NCU01833.1 hypothetical protein (24451 - 31053) 26 7.5
NCU06724.1 NCU06724.1 GLUTAMINE SYNTHETASE (GLUTAMATE--AMMONIA L... 25 9.9
>NCU07286.1 NCU07286.1 hypothetical protein (26778 - 26177)
Length = 173
Score = 73.6 bits (179), Expect = 3e-14
Identities = 49/128 (38%), Positives = 63/128 (48%), Gaps = 27/128 (21%)
Frame = +1
Query: 1 AWSRPRCGSTTG----------LTPRSLFSWPS----------RGRSTTYSQSRMFYGPG 120
+W RP +T TPR+L + RGR ++ R FYGPG
Sbjct: 40 SWLRPHTPATIPKEEPAVVFKTFTPRTLLPYNGEKDMPVYLAVRGRVFDVTRGRNFYGPG 99
Query: 121 GPYALFAGKDASRALAKMSFEPQDLTGDVSG-------LGPFELSALQDWEYKFTIKYVK 279
GPYA FAG+DASR LA SF+ + LT D+ G L +L ALQ WE +F KY+
Sbjct: 100 GPYANFAGRDASRGLACGSFDEEMLTKDLDGPLDTLSDLDKDQLEALQGWEERFLEKYLV 159
Query: 280 VGTVRGTG 303
VG + G
Sbjct: 160 VGKLVAVG 167
>NCU09480.1 NCU09480.1 hypothetical protein (8066 - 7117)
Length = 291
Score = 38.9 bits (89), Expect(2) = 3e-08
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +1
Query: 91 SQSRMFYGPGGPYALFAGKDASRALAKMSFEPQDLTGDVSGL 216
S +R YGPGG Y +FAG DASRA F +D T D+ G+
Sbjct: 155 SANRRTYGPGGSYHVFAGVDASRAYVTGCF-AEDRTPDLRGV 195
Score = 34.7 bits (78), Expect(2) = 3e-08
Identities = 14/26 (53%), Positives = 19/26 (72%)
Frame = +3
Query: 12 AEVRQYDGSDPEKPLLMAIKGQIYDV 89
AE+ +DG+D KP+ +AI G IYDV
Sbjct: 129 AELAAFDGTDESKPIYLAINGTIYDV 154
>NCU01951.1 NCU01951.1 hypothetical protein (41396 - 47277)
Length = 1926
Score = 26.9 bits (58), Expect = 3.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 235 ALQDWEYKFTIKYVKVGTVRGTGPIEQGSVSTTSEIQEEAAAVKLNGEKAP 387
++QD+ + +K T GP G++ T +++E+A A GE+ P
Sbjct: 1526 SVQDFCFAREVKLGTYSTSGRGGPAPAGALIATKKMKEDARAEPQYGERVP 1576
>NCU02053.1 NCU02053.1 hypothetical protein (14246 - 10203)
Length = 1347
Score = 26.6 bits (57), Expect = 4.4
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 73 GRSTTYSQSRMFYGPGGPYALFAGKDASRALAKMSFEPQDLTG---DVSGLGPFELSALQ 243
G+ T+++S F G G GK+A L F P DL G ++ L P + SA Q
Sbjct: 688 GKCDTFNKSVSF-GVGTNSGEVIGKEAVAILRSYKFSPGDLRGLGIQMTKLEPLKPSAAQ 746
Query: 244 DWEYK 258
K
Sbjct: 747 QGSQK 751
>NCU07870.1 NCU07870.1 hypothetical protein (119693 - 115114)
Length = 1473
Score = 26.6 bits (57), Expect = 4.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 145 KDASRALAKMSFEPQDLTGDVSGLGP 222
K S A+AK ++ PQD+ SGL P
Sbjct: 1179 KTTSEAVAKRAYTPQDVLKAESGLSP 1204
>NCU06407.1 NCU06407.1 hypothetical protein (8369 - 4914)
Length = 1131
Score = 26.6 bits (57), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 112 GPGGPYALFAGKDASRALAKMSFEPQDLTGD-VSGLG 219
GP G +A F+ + +S + EP ++ GD + GLG
Sbjct: 1057 GPDGLHAAFSNEPSSAWFMPFNMEPPEIGGDTLGGLG 1093
>NCU00513.1 NCU00513.1 hypothetical protein (65907 - 64589)
Length = 388
Score = 26.6 bits (57), Expect = 4.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 360 GETEWRESTMRHYCT*LTLNVDEIYCIALDPKRAINWMP 476
G +W ST+ H + L+ + Y LDP+++IN P
Sbjct: 236 GILDWEMSTIGHPLSDLSNLLTPFYTARLDPRQSINVHP 274
>NCU01176.1 NCU01176.1 predicted protein (71832 - 67619)
Length = 1248
Score = 26.2 bits (56), Expect = 5.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 37 LTPRSLFSWPSRGRSTTYSQSR 102
L+ L WP RGRSTT + R
Sbjct: 276 LSVHKLKGWPERGRSTTIRRKR 297
>NCU07517.1 NCU07517.1 hypothetical protein (16390 - 14741)
Length = 549
Score = 26.2 bits (56), Expect = 5.8
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = +3
Query: 27 YDGSDPEKPLLMAIKGQIYDVLPEQNVLWAWWTICI 134
YD S P+ PL +K + WAW+T+C+
Sbjct: 174 YDPSRPKLPLKARLK----------HFTWAWYTLCM 199
>NCU07355.1 NCU07355.1 hypothetical protein (37691 - 36179)
Length = 464
Score = 26.2 bits (56), Expect = 5.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 24 QYDGSDPEKPLLMAIKGQIYDVLPEQNVLWAW 119
QY + +P +M + G Y LP N W W
Sbjct: 173 QYRTALDGRPYIMPVAGWFYTNLPSWNKNWLW 204
>NCU08152.1 NCU08152.1 hypothetical protein (34695 - 36583)
Length = 537
Score = 25.8 bits (55), Expect = 7.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 447 PKLYSISRRHSGSIMCSSASWCF 379
P+LY + R +C+SA+W F
Sbjct: 409 PELYPLRLRGKAVALCTSANWAF 431
>NCU07339.1 NCU07339.1 predicted protein (136554 - 135802)
Length = 250
Score = 25.8 bits (55), Expect = 7.5
Identities = 17/60 (28%), Positives = 24/60 (39%), Gaps = 7/60 (11%)
Frame = +1
Query: 1 AWSRPRCGSTTGLTPRSLFSWPSRGRS-------TTYSQSRMFYGPGGPYALFAGKDASR 159
A S P TG++ + SWPS G S T Q ++G P + A+R
Sbjct: 130 AHSEPSVSPNTGVSNSARTSWPSVGSSVSGLNSATAAPQGAAYHGRRSPSRIHDNNHAAR 189
>NCU01833.1 NCU01833.1 hypothetical protein (24451 - 31053)
Length = 2177
Score = 25.8 bits (55), Expect = 7.5
Identities = 20/71 (28%), Positives = 32/71 (44%)
Frame = +1
Query: 7 SRPRCGSTTGLTPRSLFSWPSRGRSTTYSQSRMFYGPGGPYALFAGKDASRALAKMSFEP 186
++P T PR++ P S Y+ +R GP YAL +AS ++ +
Sbjct: 81 AKPVTPPRTTTPPRTVIESPDSHCSNQYAIARSHTGPTDGYAL-NPPEASAPSEQLEHQD 139
Query: 187 QDLTGDVSGLG 219
Q +TG +G G
Sbjct: 140 Q-MTGGANGRG 149
>NCU06724.1 NCU06724.1 GLUTAMINE SYNTHETASE (GLUTAMATE--AMMONIA
LIGASE) (58854 - 56851)
Length = 345
Score = 25.4 bits (54), Expect = 9.9
Identities = 11/38 (28%), Positives = 23/38 (59%)
Frame = +1
Query: 166 AKMSFEPQDLTGDVSGLGPFELSALQDWEYKFTIKYVK 279
AK+SF+P+ + GD +G G + ++ + +KY++
Sbjct: 218 AKVSFDPKPIPGDWNGAGLHTNFSTENMRKEGGMKYIE 255
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3343982
Number of Sequences: 6531
Number of extensions: 73529
Number of successful extensions: 232
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of query: 180
length of database: 3,158,374
effective HSP length: 42
effective length of query: 137
effective length of database: 2,884,072
effective search space: 395117864
effective search space used: 395117864
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)