BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_D09_T7.seq
         (568 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU09301.1 NCU09301.1 hypothetical protein (34712 - 29940)             32  0.11
NCU07277.1 NCU07277.1 hypothetical protein (78551 - 76284)             29  0.73

>NCU09301.1 NCU09301.1 hypothetical protein (34712 - 29940)
          Length = 1553

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 103 HISRLHIAFGSHIMHSPQSRHRLAQSHWLPKRNKNNPLF 219
           +I+  HIAF +H+   P+  H +A+S +L K  K NP +
Sbjct: 356 YITANHIAFYAHL---PKKAHEIAKSGYLSKSGKRNPKY 391



>NCU07277.1 NCU07277.1 hypothetical protein (78551 - 76284)
          Length = 734

 Score = 29.3 bits (64), Expect = 0.73
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 475 PSTSDVPEP-VTAGASMNAVTGLLAIVGFAAA 383
           PS+S VP P V AGA+  A +GLL +VG   A
Sbjct: 701 PSSSAVPPPPVEAGANAAARSGLLGVVGLLFA 732



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2948685
Number of Sequences: 6531
Number of extensions: 57414
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of query: 189
length of database: 3,158,374
effective HSP length: 42
effective length of query: 146
effective length of database: 2,884,072
effective search space: 421074512
effective search space used: 421074512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)