BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_E09_T7.seq
(472 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09223.1 NCU09223.1 hypothetical protein (128580 - 126999) 53 5e-08
NCU00813.1 NCU00813.1 hypothetical protein (21000 - 19409) 33 0.051
NCU08045.1 NCU08045.1 hypothetical protein (249784 - 246680) 28 0.97
NCU07517.1 NCU07517.1 hypothetical protein (16390 - 14741) 28 1.7
NCU02550.1 NCU02550.1 hypothetical protein (153083 - 155796) 28 1.7
NCU01349.1 NCU01349.1 hypothetical protein (188653 - 192303) 27 2.8
NCU00032.1 NCU00032.1 hypothetical protein (122970 - 120367) 26 4.8
NCU01269.1 NCU01269.1 hypothetical protein (19129 - 17181) 26 6.3
NCU06376.1 NCU06376.1 predicted protein (137542 - 135719) 26 6.3
NCU08611.1 NCU08611.1 hypothetical protein (17167 - 19047) 25 8.2
NCU07625.1 NCU07625.1 predicted protein (15161 - 17566) 25 8.2
NCU07628.1 NCU07628.1 predicted protein (22376 - 23236) 25 8.2
>NCU09223.1 NCU09223.1 hypothetical protein (128580 - 126999)
Length = 505
Score = 52.8 bits (125), Expect = 5e-08
Identities = 27/58 (46%), Positives = 38/58 (64%), Gaps = 2/58 (3%)
Frame = +1
Query: 22 EEDVVIAKMDATANDVPSEFDVQGYPT--LYFVTPSGKKVSYEGGRTADEIVDYIKKN 189
++ VVIAK+DAT NDVP E +QG+PT LY K V Y G RT ++++ +I +N
Sbjct: 408 KDKVVIAKVDATQNDVPDE--IQGFPTIKLYAAGAKDKPVEYSGPRTVEDLIKFISEN 463
>NCU00813.1 NCU00813.1 hypothetical protein (21000 - 19409)
Length = 504
Score = 32.7 bits (73), Expect = 0.051
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = +1
Query: 85 VQGYPTLYFVTPS--GKKV--SYEGGRTADEIVDYI 180
VQG+PTL + PS GK + Y+G RTA IVD +
Sbjct: 101 VQGFPTLKIIRPSKNGKPIVEDYQGQRTASAIVDAV 136
>NCU08045.1 NCU08045.1 hypothetical protein (249784 - 246680)
Length = 965
Score = 28.5 bits (62), Expect = 0.97
Identities = 14/32 (43%), Positives = 20/32 (61%)
Frame = +3
Query: 270 ISVASSRQVGEGEICFGKAASNARFCEGVKTR 365
+S+A +R VG E GK + NAR + VKT+
Sbjct: 694 LSLAGTRVVGTNEKATGKESPNARVLKDVKTQ 725
>NCU07517.1 NCU07517.1 hypothetical protein (16390 - 14741)
Length = 549
Score = 27.7 bits (60), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 456 AGTPRTDLLQYFSQRDTVSGKTGDNTSNNQLSS 358
AGTP+ + + D +SG TGDN+ N +S
Sbjct: 82 AGTPKGEYEKKGRSTDYLSGPTGDNSLNTSAAS 114
>NCU02550.1 NCU02550.1 hypothetical protein (153083 - 155796)
Length = 643
Score = 27.7 bits (60), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 3/41 (7%)
Frame = +1
Query: 64 DVPSEFDVQGYPTLYFVTPSGKKVSYEG---GRTADEIVDY 177
DVP ++D+ + VTP G+ V + GR+ D+ V+Y
Sbjct: 506 DVPGQYDLDLIKQMTGVTPRGRTVIFRPSVLGRSLDQYVNY 546
>NCU01349.1 NCU01349.1 hypothetical protein (188653 - 192303)
Length = 1216
Score = 26.9 bits (58), Expect = 2.8
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = -1
Query: 472 SSGRPGRYTTDGFVTVFLATGYSIRQNRGQHIQQPTLVLTPSQNLALEAALPKHISPSPT 293
+S + G T G + V TG S R+N +H+++PTL L S + + +P+P
Sbjct: 373 TSNQSGTSTIMGTIVVGDDTG-SQRRNTLRHVRKPTLPLRDSVSDLAPSTTSFVCTPAPA 431
Query: 292 CLLLATLMLRARPSEAP 242
+ + + R P P
Sbjct: 432 LVPASDVFQRRPPPLEP 448
>NCU00032.1 NCU00032.1 hypothetical protein (122970 - 120367)
Length = 823
Score = 26.2 bits (56), Expect = 4.8
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -1
Query: 382 HIQQPTLVLTPSQNLALEAALPKHISPSPTCLLLATLM 269
H T+ L P AL +A P HISP L TLM
Sbjct: 628 HNAPVTVKLAPFYAEALFSAFPTHISPRQFRLAFKTLM 665
>NCU01269.1 NCU01269.1 hypothetical protein (19129 - 17181)
Length = 597
Score = 25.8 bits (55), Expect = 6.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 458 GQVHHGRICYSISRNGIQYQAKPGTTHPTT 369
G +H G + RNG+Q A P T P+T
Sbjct: 179 GYLHEGTRSQTPPRNGLQAAAAPTTLTPST 208
>NCU06376.1 NCU06376.1 predicted protein (137542 - 135719)
Length = 564
Score = 25.8 bits (55), Expect = 6.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 2 RGRGRGAKRTL*SRRWTRPRMTCPVSSMSRVTPPSTSSLPAERRS 136
R G + R+ S T R P SS PP+TSS+P+ R S
Sbjct: 319 RDSGYASDRSSSSASETETRQLIPPSSPP--PPPTTSSMPSSRSS 361
>NCU08611.1 NCU08611.1 hypothetical protein (17167 - 19047)
Length = 579
Score = 25.4 bits (54), Expect = 8.2
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -2
Query: 117 SDEVEGGVTLDIELTGHVIRGRVHLRDHNVLFAPRPRP 4
+DE +G +DI L G RG + HN +P P P
Sbjct: 248 ADEAKGTQGIDIYLCGGGFRGYGSMLMHNDPISPYPIP 285
>NCU07625.1 NCU07625.1 predicted protein (15161 - 17566)
Length = 677
Score = 25.4 bits (54), Expect = 8.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 5 GRGRGAKRTL*SRRWTRPRMTCPVSSMSRVTPPSTSSLPAERRSPTRAAG 154
GR +GAK + R P ++ + PP ++ P RR P R G
Sbjct: 498 GRPKGAKNK--NPRPRDPAAPAAAAAAAATPPPPDANAPPARRGPGRPKG 545
>NCU07628.1 NCU07628.1 predicted protein (22376 - 23236)
Length = 286
Score = 25.4 bits (54), Expect = 8.2
Identities = 17/45 (37%), Positives = 23/45 (50%)
Frame = -1
Query: 430 TVFLATGYSIRQNRGQHIQQPTLVLTPSQNLALEAALPKHISPSP 296
T+F +T +I Q Q + PT +L P+ A EAA SP P
Sbjct: 32 TMFTSTLGTIIQQ--QTVPSPTTILPPASKTAPEAAPGGATSPRP 74
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2868612
Number of Sequences: 6531
Number of extensions: 59479
Number of successful extensions: 233
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of query: 157
length of database: 3,158,374
effective HSP length: 42
effective length of query: 114
effective length of database: 2,884,072
effective search space: 328784208
effective search space used: 328784208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)