BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_E11_T7.seq
(347 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02130.1 NCU02130.1 predicted protein (29499 - 31007) 32 0.053
NCU00420.1 NCU00420.1 predicted protein (1957 - 3663) 28 0.58
NCU01309.1 NCU01309.1 hypothetical protein ( (AL451021) conserve... 26 2.9
NCU08197.1 NCU08197.1 hypothetical protein (27399 - 30172) 26 2.9
NCU07863.1 NCU07863.1 hypothetical protein (79058 - 85856) 26 3.8
NCU07877.1 NCU07877.1 predicted protein (6212 - 9768) 25 4.9
NCU00786.1 NCU00786.1 predicted protein (71414 - 73802) 25 4.9
NCU02563.1 NCU02563.1 hypothetical protein (199372 - 200413) 25 4.9
NCU08848.1 NCU08848.1 predicted protein (18566 - 15784) 25 4.9
NCU09104.1 NCU09104.1 hypothetical protein (122932 - 115837) 25 6.4
NCU08700.1 NCU08700.1 hypothetical protein ( hypothetical protei... 25 8.4
NCU08901.1 NCU08901.1 predicted protein (77321 - 74505) 25 8.4
NCU09740.1 NCU09740.1 hypothetical protein (64538 - 54582) 25 8.4
NCU06638.1 NCU06638.1 hypothetical protein (13218 - 17185) 25 8.4
NCU01895.1 NCU01895.1 hypothetical protein (130027 - 126598) 25 8.4
>NCU02130.1 NCU02130.1 predicted protein (29499 - 31007)
Length = 502
Score = 32.0 bits (71), Expect = 0.053
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 34 STELATPTNTRQNKCDDTAKNYHQSCSSSTMGYKPKEE 147
S++ +T TNT+Q K TA HQS S T+ +P +E
Sbjct: 173 SSQSSTATNTQQRKVPVTADQSHQSTQSPTVEEEPFQE 210
>NCU00420.1 NCU00420.1 predicted protein (1957 - 3663)
Length = 522
Score = 28.5 bits (62), Expect = 0.58
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 251 RRSCHLMERHLMEKNSNLEETSSERYLPGR 340
R++ H + RHLM +SNL TS ++P +
Sbjct: 263 RQNPHPLTRHLMNHSSNLASTSHIHHVPAK 292
>NCU01309.1 NCU01309.1 hypothetical protein ( (AL451021) conserved
hypothetical protein [Neu
Length = 540
Score = 26.2 bits (56), Expect = 2.9
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = -3
Query: 318 DEVSSRFEFFSIRWRSIRWQERRAPYHVGQLRGADEPL 205
+++ + SI WRSI ER+ + QLR E L
Sbjct: 138 EQIKGTYRNVSISWRSIEQLERKTQHQDEQLREVCERL 175
>NCU08197.1 NCU08197.1 hypothetical protein (27399 - 30172)
Length = 785
Score = 26.2 bits (56), Expect = 2.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 267 RWQERRAPYHVGQLRGADEPLPGP 196
RW ER+ +LRG PLPGP
Sbjct: 21 RWLERK------RLRGGSRPLPGP 38
>NCU07863.1 NCU07863.1 hypothetical protein (79058 - 85856)
Length = 2189
Score = 25.8 bits (55), Expect = 3.8
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +3
Query: 183 QCRPQDQEEAHQPREAG---RHGRV 248
Q +PQ Q +AHQP++A +HG V
Sbjct: 2092 QPQPQSQPQAHQPQQASQQVQHGLV 2116
>NCU07877.1 NCU07877.1 predicted protein (6212 - 9768)
Length = 831
Score = 25.4 bits (54), Expect = 4.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 278 HLMEKNSNLEETSSERYLPGRPL 346
HL +KNS + SS RYL G L
Sbjct: 417 HLSQKNSGPPQASSRRYLLGLSL 439
>NCU00786.1 NCU00786.1 predicted protein (71414 - 73802)
Length = 596
Score = 25.4 bits (54), Expect = 4.9
Identities = 13/44 (29%), Positives = 23/44 (51%)
Frame = +1
Query: 85 TAKNYHQSCSSSTMGYKPKEEHV*HAESPISYASADHRTRKRLI 216
T +Y+++ +++T G H HA S + SA H+TR +
Sbjct: 394 TYSSYNRTSNTTTTG-----THQVHASSSCGHQSASHQTRSHTL 432
>NCU02563.1 NCU02563.1 hypothetical protein (199372 - 200413)
Length = 298
Score = 25.4 bits (54), Expect = 4.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 258 ERRAPYHVGQLRGADEPLPGPVVCTGIRNR 169
+R+ Y Q R ADEP+ CT NR
Sbjct: 265 QRKVSYSQAQTRSADEPMTTFCECTVCGNR 294
>NCU08848.1 NCU08848.1 predicted protein (18566 - 15784)
Length = 900
Score = 25.4 bits (54), Expect = 4.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 138 ERRTCLACRIADFLCQCRP 194
E+RTC+ CR C RP
Sbjct: 28 EKRTCITCRARKVKCDGRP 46
>NCU09104.1 NCU09104.1 hypothetical protein (122932 - 115837)
Length = 2300
Score = 25.0 bits (53), Expect = 6.4
Identities = 20/69 (28%), Positives = 31/69 (43%)
Frame = +1
Query: 25 HSKSTELATPTNTRQNKCDDTAKNYHQSCSSSTMGYKPKEEHV*HAESPISYASADHRTR 204
+SK TEL QN+ +D Y + S++T + E+++ S I + A H
Sbjct: 1865 NSKKTELDELMRRHQNEVEDLQTRYERQLSNTTEDAQRTEKNLLDRLS-IETSKAQHLQD 1923
Query: 205 KRLISPAKL 231
K L KL
Sbjct: 1924 KLLHVEEKL 1932
>NCU08700.1 NCU08700.1 hypothetical protein ( hypothetical protein
B24M22.240 [imported] - N
Length = 1043
Score = 24.6 bits (52), Expect = 8.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 140 KKNMSSMPNRRFLMPVQT 193
++++SSMPNR LMP T
Sbjct: 374 EEHLSSMPNRNSLMPEAT 391
>NCU08901.1 NCU08901.1 predicted protein (77321 - 74505)
Length = 938
Score = 24.6 bits (52), Expect = 8.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 179 MPVQTTGPGRGSSAPRSWP 235
MPV G G G+S SWP
Sbjct: 759 MPVTMAGTGTGTSIYASWP 777
>NCU09740.1 NCU09740.1 hypothetical protein (64538 - 54582)
Length = 2818
Score = 24.6 bits (52), Expect = 8.4
Identities = 17/69 (24%), Positives = 25/69 (35%)
Frame = +2
Query: 2 KRVPKSLFTASLLNWQHQPIHGKTNXXXXXXXXXXXXXHLPWDISRKKNMSSMPNRRFLM 181
K+ PK L +L W+ HLP +++N
Sbjct: 375 KQKPKPLIDLMML-WRKSKSDAANEAREARTQLHQARSHLPGAALQRRNTE--------- 424
Query: 182 PVQTTGPGR 208
PVQ+TGPG+
Sbjct: 425 PVQSTGPGQ 433
>NCU06638.1 NCU06638.1 hypothetical protein (13218 - 17185)
Length = 1300
Score = 24.6 bits (52), Expect = 8.4
Identities = 10/28 (35%), Positives = 15/28 (52%)
Frame = +3
Query: 171 DFLCQCRPQDQEEAHQPREAGRHGRVPG 254
DF+ +C D + +P EA RH + G
Sbjct: 1121 DFIARCLRWDPDRRMKPEEAVRHEFITG 1148
>NCU01895.1 NCU01895.1 hypothetical protein (130027 - 126598)
Length = 1114
Score = 24.6 bits (52), Expect = 8.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 192 PQDQEEAHQPREAGRHGRVPGALA 263
P EE H+P E G PGALA
Sbjct: 648 PTYYEETHRPSEGGTDYFGPGALA 671
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.317 0.126 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2018881
Number of Sequences: 6531
Number of extensions: 39630
Number of successful extensions: 152
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of query: 115
length of database: 3,158,374
effective HSP length: 46
effective length of query: 69
effective length of database: 2,857,948
effective search space: 197198412
effective search space used: 197198412
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)