BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_F02_T7.seq
(472 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02630.1 NCU02630.1 hypothetical protein (36007 - 33575) 100 3e-22
NCU00104.1 NCU00104.1 hypothetical protein (84259 - 81476) 93 3e-20
NCU01021.1 NCU01021.1 hypothetical protein (79046 - 77702) 26 6.1
NCU07000.1 NCU07000.1 predicted protein (178094 - 180027) 25 8.0
>NCU02630.1 NCU02630.1 hypothetical protein (36007 - 33575)
Length = 810
Score = 100 bits (248), Expect = 3e-22
Identities = 46/121 (38%), Positives = 76/121 (62%)
Frame = +1
Query: 16 GRCYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKE 195
G + +K V + + + PEFLNR+D I+F++L +++I DI LKE+ +RL +
Sbjct: 666 GDIHPDVKQAVMDVVASQYPPEFLNRIDSFIIFKRLAMEALRDIVDIRLKELQERLNDRR 725
Query: 196 IDLQVTEKFRDRVVDEGYNPSYGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSAIVDVDS 375
I L V E+ R + + GY+P +GARPL R I + + LA+K++ G++K GD A+V++
Sbjct: 726 ITLDVPEEVRQWLAERGYDPKFGARPLNRLITTEIGNGLADKIIRGQIKSGDKAVVEIKE 785
Query: 376 D 378
D
Sbjct: 786 D 786
>NCU00104.1 NCU00104.1 hypothetical protein (84259 - 81476)
Length = 927
Score = 93.2 bits (230), Expect = 3e-20
Identities = 46/133 (34%), Positives = 87/133 (64%), Gaps = 2/133 (1%)
Frame = +1
Query: 4 SGRPGRCYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRL 183
+ + G+ + LV L+ YF PEFLNR+ +++F +LT+ E+++I ++ + E+ RL
Sbjct: 759 NAKDGKIDPTTRELVMNALRNYFLPEFLNRISSIVIFNRLTRREIRKIVELRIAEIQKRL 818
Query: 184 K--AKEIDLQVTEKFRDRVVDEGYNPSYGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSA 357
+ + + ++V+E+ +D++ GY+P+YGARPL+R + + + + LA +L G +++G+ A
Sbjct: 819 QDNDRNVKIEVSEEAKDKLGALGYSPAYGARPLQRVLEKEVLNRLAVLILRGSIRDGEVA 878
Query: 358 IVDVDSDGKVVVL 396
V V DGK+ VL
Sbjct: 879 RV-VVQDGKITVL 890
>NCU01021.1 NCU01021.1 hypothetical protein (79046 - 77702)
Length = 369
Score = 25.8 bits (55), Expect = 6.1
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +1
Query: 181 LKAKEIDLQVTEKFRDRVVDEGYNPSYGARPLRRAI---MRLLEDSLAEKMLAGEVKEGD 351
L K +L + F + + D SY A +R I RL L E GE K+G+
Sbjct: 264 LAPKVSNLAIENDFNNHIQDV-LMVSYLANTIRTQIELSQRLATAKLDEGKEGGEKKDGE 322
Query: 352 SAIVDVDSDGKVVVLNSGG 408
A D +DG+ GG
Sbjct: 323 GAEGDKKTDGQRGQRGQGG 341
>NCU07000.1 NCU07000.1 predicted protein (178094 - 180027)
Length = 589
Score = 25.4 bits (54), Expect = 8.0
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -1
Query: 466 SRPRYPTRHSEQAPAALQYHPR 401
S+P P+ ++QAP L+ HPR
Sbjct: 161 SQPLNPSVSNDQAPGNLEVHPR 182
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.139 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2621704
Number of Sequences: 6531
Number of extensions: 52673
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of query: 157
length of database: 3,158,374
effective HSP length: 44
effective length of query: 112
effective length of database: 2,871,010
effective search space: 321553120
effective search space used: 321553120
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)