BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_F03_T7.seq
(348 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02630.1 NCU02630.1 hypothetical protein (36007 - 33575) 60 3e-10
NCU00104.1 NCU00104.1 hypothetical protein (84259 - 81476) 45 8e-06
NCU09090.1 NCU09090.1 hypothetical protein (76741 - 74930) 26 3.1
NCU09758.1 NCU09758.1 hypothetical protein (15938 - 12305) 26 4.0
NCU02716.1 NCU02716.1 hypothetical protein (14206 - 12269) 25 5.3
NCU07000.1 NCU07000.1 predicted protein (178094 - 180027) 25 5.3
NCU02173.1 NCU02173.1 hypothetical protein (4737 - 768) 25 5.3
NCU01021.1 NCU01021.1 hypothetical protein (79046 - 77702) 25 6.9
NCU08547.1 NCU08547.1 predicted protein (68880 - 70265) 25 9.0
>NCU02630.1 NCU02630.1 hypothetical protein (36007 - 33575)
Length = 810
Score = 59.7 bits (143), Expect = 3e-10
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +3
Query: 15 KDIADIILKEGCDLLTADEIDLQGT*KFRDRVVDEGYNPSYGARPLRRAIMRLLEDSLAE 194
+DI DI LKE + L I L + R + + GY+P +GARPL R I + + LA+
Sbjct: 707 RDIVDIRLKELQERLNDRRITLDVPEEVRQWLAERGYDPKFGARPLNRLITTEIGNGLAD 766
Query: 195 KMLAGEVKEGDSAIDDVDSD 254
K++ G++K GD A+ ++ D
Sbjct: 767 KIIRGQIKSGDKAVVEIKED 786
>NCU00104.1 NCU00104.1 hypothetical protein (84259 - 81476)
Length = 927
Score = 44.7 bits (104), Expect = 8e-06
Identities = 23/58 (39%), Positives = 39/58 (66%)
Frame = +3
Query: 99 RDRVVDEGYNPSYGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSAIDDVDSDGKVVVL 272
+D++ GY+P+YGARPL+R + + + + LA +L G +++G+ A V DGK+ VL
Sbjct: 834 KDKLGALGYSPAYGARPLQRVLEKEVLNRLAVLILRGSIRDGEVA-RVVVQDGKITVL 890
>NCU09090.1 NCU09090.1 hypothetical protein (76741 - 74930)
Length = 440
Score = 26.2 bits (56), Expect = 3.1
Identities = 15/37 (40%), Positives = 19/37 (50%)
Frame = +3
Query: 195 KMLAGEVKEGDSAIDDVDSDGKVVVLNTGGGIAEPLE 305
K L VK+ ID +G+ +VL T GG PLE
Sbjct: 30 KDLEKHVKQAKDFIDFHAKEGRRLVLITSGGTTVPLE 66
>NCU09758.1 NCU09758.1 hypothetical protein (15938 - 12305)
Length = 1191
Score = 25.8 bits (55), Expect = 4.0
Identities = 13/43 (30%), Positives = 22/43 (50%)
Frame = +1
Query: 34 FSKKDVICSRRTKSTSRGHRSSGIGLLMKVTTRATVPGLCDAP 162
F + + S +T+ R+S ++ + +TRAT P L AP
Sbjct: 648 FRAESMTASSSASATTYISRTSESSMVSQTSTRATTPDLTHAP 690
>NCU02716.1 NCU02716.1 hypothetical protein (14206 - 12269)
Length = 611
Score = 25.4 bits (54), Expect = 5.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 73 STSRGHRSSGIGLLMKVTTRATVPGLCDAPL*G 171
+ S+G R+SG+G + T TV L P+ G
Sbjct: 521 AASKGLRTSGVGTTVGSATAGTVSSLAFTPMQG 553
>NCU07000.1 NCU07000.1 predicted protein (178094 - 180027)
Length = 589
Score = 25.4 bits (54), Expect = 5.3
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -1
Query: 342 SRPRYPTRHSEQAPAALQYHPR 277
S+P P+ ++QAP L+ HPR
Sbjct: 161 SQPLNPSVSNDQAPGNLEVHPR 182
>NCU02173.1 NCU02173.1 hypothetical protein (4737 - 768)
Length = 1205
Score = 25.4 bits (54), Expect = 5.3
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = -1
Query: 150 EAWHRSSGCNLHQQPYPGTSMSPGGR 73
E R+S LHQ PY GT GR
Sbjct: 843 EETRRASAYFLHQDPYSGTGGEGNGR 868
>NCU01021.1 NCU01021.1 hypothetical protein (79046 - 77702)
Length = 369
Score = 25.0 bits (53), Expect = 6.9
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +3
Query: 132 SYGARPLRRAI---MRLLEDSLAEKMLAGEVKEGDSAIDDVDSDGKVVVLNTGG 284
SY A +R I RL L E GE K+G+ A D +DG+ GG
Sbjct: 288 SYLANTIRTQIELSQRLATAKLDEGKEGGEKKDGEGAEGDKKTDGQRGQRGQGG 341
>NCU08547.1 NCU08547.1 predicted protein (68880 - 70265)
Length = 461
Score = 24.6 bits (52), Expect = 9.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 225 DSAIDDVDSDGKVVV 269
DSA D+DSDGK+ +
Sbjct: 30 DSAQSDIDSDGKIYI 44
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2143230
Number of Sequences: 6531
Number of extensions: 44108
Number of successful extensions: 164
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of query: 116
length of database: 3,158,374
effective HSP length: 42
effective length of query: 73
effective length of database: 2,884,072
effective search space: 210537256
effective search space used: 210537256
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)