BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_F08_T7.seq
         (607 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU07286.1 NCU07286.1 hypothetical protein (26778 - 26177)             88  1e-18
NCU09480.1 NCU09480.1 hypothetical protein (8066 - 7117)               69  9e-13
NCU07870.1 NCU07870.1 hypothetical protein (119693 - 115114)           27  5.1
NCU06407.1 NCU06407.1 hypothetical protein (8369 - 4914)               27  5.1
NCU01223.1 NCU01223.1 hypothetical protein (220196 - 220780)           26  8.8
NCU07766.1 NCU07766.1 hypothetical protein ( (AL513410) conserve...    26  8.8
NCU00892.1 NCU00892.1 hypothetical protein ( tetrahydrofolylpoly...    26  8.8

>NCU07286.1 NCU07286.1 hypothetical protein (26778 - 26177)
          Length = 173

 Score = 88.2 bits (217), Expect = 1e-18
 Identities = 45/99 (45%), Positives = 65/99 (65%), Gaps = 7/99 (7%)
 Frame = +3

Query: 27  YDGSDPEKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEPQDLTGDV 206
           Y+G + + P+ +A++G+++DV++ R FYGPGGPYA FAG+DASR LA  SF+ + LT D+
Sbjct: 70  YNG-EKDMPVYLAVRGRVFDVTRGRNFYGPGGPYANFAGRDASRGLACGSFDEEMLTKDL 128

Query: 207 SG-------LGPFELSALQDWEYKFTSKYVKVGTVKGTG 302
            G       L   +L ALQ WE +F  KY+ VG +   G
Sbjct: 129 DGPLDTLSDLDKDQLEALQGWEERFLEKYLVVGKLVAVG 167



>NCU09480.1 NCU09480.1 hypothetical protein (8066 - 7117)
          Length = 291

 Score = 68.9 bits (167), Expect = 9e-13
 Identities = 35/68 (51%), Positives = 45/68 (65%)
 Frame = +3

Query: 12  AEVRQYDGSDPEKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEPQD 191
           AE+  +DG+D  KP+ +AI G IYDVS +R  YGPGG Y +FAG DASRA     F  +D
Sbjct: 129 AELAAFDGTDESKPIYLAINGTIYDVSANRRTYGPGGSYHVFAGVDASRAYVTGCF-AED 187

Query: 192 LTGDVSGL 215
            T D+ G+
Sbjct: 188 RTPDLRGV 195



>NCU07870.1 NCU07870.1 hypothetical protein (119693 - 115114)
          Length = 1473

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 144  KDASRALAKMSFEPQDLTGDVSGLGP 221
            K  S A+AK ++ PQD+    SGL P
Sbjct: 1179 KTTSEAVAKRAYTPQDVLKAESGLSP 1204



>NCU06407.1 NCU06407.1 hypothetical protein (8369 - 4914)
          Length = 1131

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111  GPGGPYALFAGKDASRALAKMSFEPQDLTGD-VSGLG 218
            GP G +A F+ + +S      + EP ++ GD + GLG
Sbjct: 1057 GPDGLHAAFSNEPSSAWFMPFNMEPPEIGGDTLGGLG 1093



>NCU01223.1 NCU01223.1 hypothetical protein (220196 - 220780)
          Length = 160

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +1

Query: 16  RCGSTTGLTPRSLFSWPSRGRSTTSPR---AECFMGLVD 123
           R G T    P+    WP RGR T   +   +E  MGLV+
Sbjct: 95  RKGITVKEIPKGGVPWPERGRDTKDGKKVWSEGVMGLVE 133



>NCU07766.1 NCU07766.1 hypothetical protein ( (AL513410) conserved
           hypothetical protein [Neu
          Length = 607

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 12/39 (30%), Positives = 22/39 (55%)
 Frame = +3

Query: 3   VVAAEVRQYDGSDPEKPLLMAIKGQIYDVSQSRMFYGPG 119
           ++AAE R Y G   + P +++ +  + + S+   FYG G
Sbjct: 265 ILAAEKRSYSGPLEDVPTILSNQVPLDNPSRDHRFYGFG 303



>NCU00892.1 NCU00892.1 hypothetical protein (
           tetrahydrofolylpolyglutamate synthase (EC 6.3.
          Length = 528

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 194 QILWLKGHLCQCPTGIFTSKQCIWSTRPIKHSALGDVVDLPLDGHEKRLLGVR 36
           +I W K  + +  +  FT +Q   +T+ +K  A+   VDL +   + RL GV+
Sbjct: 246 KIAWHKAGIMKTGSPAFTIEQVPSATQVLKDRAVEKGVDLKILDVDPRLNGVK 298



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3641226
Number of Sequences: 6531
Number of extensions: 81078
Number of successful extensions: 259
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of query: 202
length of database: 3,158,374
effective HSP length: 42
effective length of query: 159
effective length of database: 2,884,072
effective search space: 458567448
effective search space used: 458567448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)