BLAST Search Results

BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_F11_T7.seq
         (568 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU06340.1 NCU06340.1 hypothetical protein (25692 - 24277)             41  2e-04
NCU00714.1 NCU00714.1 hypothetical protein (51219 - 49352)             41  2e-04
NCU01433.1 NCU01433.1 hypothetical protein ( serine/threonine pr...    34  0.023
NCU00870.1 NCU00870.1 hypothetical protein (44390 - 46728)             32  0.11
NCU06882.1 NCU06882.1 hypothetical protein (27752 - 24500)             29  0.95
NCU00170.1 NCU00170.1 hypothetical protein (97195 - 94709)             29  0.95
NCU08250.1 NCU08250.1 predicted protein (186022 - 187105)              28  1.6
NCU06935.1 NCU06935.1 predicted protein (11581 - 7538)                 28  2.1
NCU06612.1 NCU06612.1 predicted protein (74764 - 71570)                27  3.6

>NCU06340.1 NCU06340.1 hypothetical protein (25692 - 24277)
          Length = 471

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
 Frame = +3

Query: 15  EVLYANRSLCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLD 194
           E LY NR+ C L + +      D      L P   KA YR   A + + +  +A  A   
Sbjct: 214 ETLYCNRAACHLSLANYRSCTLDCAAALRLNPSNLKALYRSGRALLSVSKIAEADDACAR 273

Query: 195 AQKLDPGNAEIERELR----KARELMKNHPAE 278
             ++DP NA +++  R    K  E+ +   AE
Sbjct: 274 GLEIDPSNAALKQLARDLIAKNEEITRKQRAE 305



>NCU00714.1 NCU00714.1 hypothetical protein (51219 - 49352)
          Length = 578

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 40/88 (45%)
 Frame = +3

Query: 18  VLYANRSLCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLDA 197
           +LY+NRS       D + AL DA +   ++PD  K   R+ TA     +   A  A    
Sbjct: 39  ILYSNRSAAYASKKDWDNALKDAEKTTEIKPDWPKGWGRKGTALFGKGDLLGANDAYEQG 98

Query: 198 QKLDPGNAEIERELRKARELMKNHPAEG 281
            K+DP NA ++++    +  M+     G
Sbjct: 99  LKIDPNNAGMKKDFEAVQRAMQQEAGGG 126



 Score = 29.3 bits (64), Expect = 0.73
 Identities = 24/85 (28%), Positives = 40/85 (46%), Gaps = 6/85 (7%)
 Frame = +3

Query: 24  YANRSLCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLDAQK 203
           Y+NR+   + + +   AL D        P   +A  R+A  +  ++EY +   A  +A+K
Sbjct: 423 YSNRAAAFMKLLEFPSALEDCETAIKKDPKFIRAYIRKAQIYFGMREYSKCVDACTEARK 482

Query: 204 LDP-----GNA-EIERELRKARELM 260
           +D       NA EIE+  +KA   M
Sbjct: 483 IDAEYHNGANAREIEQLEQKAFNAM 507



>NCU01433.1 NCU01433.1 hypothetical protein ( serine/threonine
           protein phosphatase ppt1 [imp
          Length = 479

 Score = 34.3 bits (77), Expect = 0.023
 Identities = 21/80 (26%), Positives = 39/80 (48%)
 Frame = +3

Query: 24  YANRSLCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLDAQK 203
           ++NR+   L       A+ DA +   L P   KA YR+ATA+  +   K+A        K
Sbjct: 45  WSNRAQAHLKTEAYGYAIRDATKAIELNPGFVKAYYRRATAYAAILNPKEAVKDFKTCVK 104

Query: 204 LDPGNAEIERELRKARELMK 263
           + P N + + +L +  ++++
Sbjct: 105 IAPDNKDAKLKLVECEKIVR 124



>NCU00870.1 NCU00870.1 hypothetical protein (44390 - 46728)
          Length = 724

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 24/76 (31%), Positives = 36/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 21  LYANRSLCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLDAQ 200
           +Y  R+   LL+G  + A +DAL  R+      KA Y    A   L EY  +     +A 
Sbjct: 232 VYTKRAGVNLLLGRYDAAKADALASRIGASTDWKAYYNAGRAAYGLCEYATSKSYFEEAL 291

Query: 201 KL-DPGNAEIERELRK 245
           KL D G A +++E  +
Sbjct: 292 KLNDKGTANVQKEYER 307



>NCU06882.1 NCU06882.1 hypothetical protein (27752 - 24500)
          Length = 617

 Score = 28.9 bits (63), Expect = 0.95
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
 Frame = +3

Query: 39  LCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQA--------CHALLD 194
           +C +   DG+G  S A++C      C   CYRQ  +  + +E + A        C+ ++D
Sbjct: 219 MCDICCEDGDGLESFAIKCG--HRYCVD-CYRQYLSQKIREEGEAARIQCPADGCNLIID 275

Query: 195 AQKLD 209
           A+ LD
Sbjct: 276 ARSLD 280



>NCU00170.1 NCU00170.1 hypothetical protein (97195 - 94709)
          Length = 784

 Score = 28.9 bits (63), Expect = 0.95
 Identities = 15/43 (34%), Positives = 23/43 (52%)
 Frame = +3

Query: 99  MLRPDCAKACYRQATAHMLLKEYKQACHALLDAQKLDPGNAEI 227
           +L+P+ A     +A A+M   +YK A      A +LDP N +I
Sbjct: 320 VLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKI 362



>NCU08250.1 NCU08250.1 predicted protein (186022 - 187105)
          Length = 336

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 9   AAEVLYANRSLCKLLMGDGEG 71
           AA+VLYA    CK L+ DG G
Sbjct: 307 AADVLYAGHGQCKRLLTDGNG 327



>NCU06935.1 NCU06935.1 predicted protein (11581 - 7538)
          Length = 1347

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 20/67 (29%), Positives = 32/67 (46%)
 Frame = +3

Query: 78  SDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLDAQKLDPGNAEIERELRKAREL 257
           SD  R R  + +  K   RQ     L  E ++     L+ QKL+     +EREL++ +EL
Sbjct: 351 SDQQRLRQQQMENQKLRQRQVEEERL--EAQKIKERRLELQKLEQEKLRLERELQEHQEL 408

Query: 258 MKNHPAE 278
           ++    E
Sbjct: 409 LEKQRLE 415



>NCU06612.1 NCU06612.1 predicted protein (74764 - 71570)
          Length = 1043

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 177 CHAL-LDAQKLDPGNAEIERELRKARELMKNHPAEGVQ 287
           CH L +D+ KLDP    +ER+ R A  L++    E ++
Sbjct: 44  CHGLTVDSLKLDPWKGVLERDARIAATLIQTEFGELIE 81



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3289004
Number of Sequences: 6531
Number of extensions: 64344
Number of successful extensions: 190
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of query: 189
length of database: 3,158,374
effective HSP length: 42
effective length of query: 146
effective length of database: 2,884,072
effective search space: 421074512
effective search space used: 421074512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)