BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_G02_T7.seq
(219 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02630.1 NCU02630.1 hypothetical protein (36007 - 33575) 44 6e-06
NCU00104.1 NCU00104.1 hypothetical protein (84259 - 81476) 36 0.002
NCU07000.1 NCU07000.1 predicted protein (178094 - 180027) 25 2.4
NCU02359.1 NCU02359.1 predicted protein (47552 - 45404) 25 3.1
NCU00869.1 NCU00869.1 predicted protein (40687 - 43662) 24 5.3
NCU08547.1 NCU08547.1 predicted protein (68880 - 70265) 24 7.0
NCU07235.1 NCU07235.1 predicted protein (24626 - 22552) 23 9.1
>NCU02630.1 NCU02630.1 hypothetical protein (36007 - 33575)
Length = 810
Score = 43.9 bits (102), Expect = 6e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +3
Query: 6 FGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSAIVDVDSD 125
FGARPL R I + + LA+K++ G++K GD A+V++ D
Sbjct: 747 FGARPLNRLITTEIGNGLADKIIRGQIKSGDKAVVEIKED 786
>NCU00104.1 NCU00104.1 hypothetical protein (84259 - 81476)
Length = 927
Score = 35.8 bits (81), Expect = 0.002
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +3
Query: 6 FGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSAIVDVDSDGKVVVL 143
+GARPL+R + + + + LA +L G +++G+ A V V DGK+ VL
Sbjct: 846 YGARPLQRVLEKEVLNRLAVLILRGSIRDGEVARV-VVQDGKITVL 890
>NCU07000.1 NCU07000.1 predicted protein (178094 - 180027)
Length = 589
Score = 25.4 bits (54), Expect = 2.4
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -1
Query: 213 SRPRYPTRHSEQAPAALQYHPR 148
S+P P+ ++QAP L+ HPR
Sbjct: 161 SQPLNPSVSNDQAPGNLEVHPR 182
>NCU02359.1 NCU02359.1 predicted protein (47552 - 45404)
Length = 696
Score = 25.0 bits (53), Expect = 3.1
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = -3
Query: 103 AESPSLTSPASIFSARLSSKSLIMARRRGLAP 8
+ SPS++S S+ R ++ S I RR L+P
Sbjct: 459 SRSPSVSSRRSLIRGRPTTSSSISPSRRALSP 490
>NCU00869.1 NCU00869.1 predicted protein (40687 - 43662)
Length = 991
Score = 24.3 bits (51), Expect = 5.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 216 WSRPRYPTRHSEQAPAALQYH 154
W P+Y + +PAAL+ H
Sbjct: 395 WEWPKYAVNELDMSPAALEKH 415
>NCU08547.1 NCU08547.1 predicted protein (68880 - 70265)
Length = 461
Score = 23.9 bits (50), Expect = 7.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 96 DSAIVDVDSDGKVVV 140
DSA D+DSDGK+ +
Sbjct: 30 DSAQSDIDSDGKIYI 44
>NCU07235.1 NCU07235.1 predicted protein (24626 - 22552)
Length = 613
Score = 23.5 bits (49), Expect = 9.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 198 PTRHSEQAPAALQYHP 151
P H QAP+ +Q HP
Sbjct: 7 PRHHGSQAPSDIQTHP 22
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1278114
Number of Sequences: 6531
Number of extensions: 21346
Number of successful extensions: 83
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of query: 73
length of database: 3,158,374
effective HSP length: 39
effective length of query: 33
effective length of database: 2,903,665
effective search space: 95820945
effective search space used: 95820945
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)