BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_G07_T7.seq
(438 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07826.1 NCU07826.1 hypothetical protein (28232 - 27373) 96 4e-21
NCU02762.1 NCU02762.1 hypothetical protein (13422 - 6705) 29 0.51
NCU07707.1 NCU07707.1 predicted protein (77442 - 73753) 28 0.88
NCU07598.1 NCU07598.1 hypothetical protein (54787 - 59704) 28 1.1
NCU00234.1 NCU00234.1 predicted protein (40954 - 43270) 28 1.1
NCU01370.1 NCU01370.1 hypothetical protein ( (AL353822) related ... 27 2.5
NCU08334.1 NCU08334.1 predicted protein (5817 - 9381) 27 2.5
NCU02554.1 NCU02554.1 hypothetical protein (164228 - 169299) 27 3.3
NCU02339.1 NCU02339.1 predicted protein (65853 - 66944) 26 4.3
NCU00285.1 NCU00285.1 predicted protein (246933 - 248696) 26 5.7
NCU08452.1 NCU08452.1 predicted protein (18165 - 21566) 26 5.7
NCU09241.1 NCU09241.1 hypothetical protein (12885 - 10072) 25 7.4
NCU08396.1 NCU08396.1 predicted protein (13926 - 15820) 25 9.7
NCU08946.1 NCU08946.1 hypothetical protein (51664 - 50757) 25 9.7
>NCU07826.1 NCU07826.1 hypothetical protein (28232 - 27373)
Length = 149
Score = 95.9 bits (237), Expect = 4e-21
Identities = 43/87 (49%), Positives = 67/87 (76%), Gaps = 1/87 (1%)
Frame = -1
Query: 417 YYIRAASMARKIYLRQGIGIGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGI 238
+Y+RAAS+AR +YLR+ +G+G ++++G + GSRP H ++SG+V R +LQ L+K+G+
Sbjct: 54 FYVRAASVARHVYLRKTVGVGRLRRVHGTAKNRGSRPSHHVEASGSVDRKVLQALEKIGV 113
Query: 237 IDVD-PKGGRLITSQGRRDLDQVAGTV 160
++ D KGGR IT QG+RDLD++A TV
Sbjct: 114 LEHDEEKGGRRITQQGQRDLDRIAQTV 140
>NCU02762.1 NCU02762.1 hypothetical protein (13422 - 6705)
Length = 2218
Score = 29.3 bits (64), Expect = 0.51
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 385 DLPEAGNRDRRLPEDLRWPSEERFTPTALLQEQRCCFPQHP 263
D P G+ + D +PS+ PT E FPQHP
Sbjct: 269 DRPRTGHASGPMLVDTSYPSQMEQNPTEKRPESHHVFPQHP 309
>NCU07707.1 NCU07707.1 predicted protein (77442 - 73753)
Length = 1229
Score = 28.5 bits (62), Expect = 0.88
Identities = 18/71 (25%), Positives = 32/71 (44%)
Frame = -1
Query: 438 SSGRPGRYYIRAASMARKIYLRQGIGIGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQ 259
S +PG RAA + ++ + + + G + + G+ G +P SGA +
Sbjct: 848 SMRQPGDVPTRAA-LDQRGNPKSPVAVPGENRSFSGQTTPGQKPQRIPDPSGAFESPVKT 906
Query: 258 ELQKMGIIDVD 226
+ G+IDVD
Sbjct: 907 SINDDGVIDVD 917
>NCU07598.1 NCU07598.1 hypothetical protein (54787 - 59704)
Length = 1356
Score = 28.1 bits (61), Expect = 1.1
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Frame = +1
Query: 199 GGDEPSTLGV-----DINDAHLLQLLEDVAGNSTAA-----LAEVRWA*TVPLTATVDLL 348
GGD+ G+ D +A +++EDV GN A L + + ++P +T +
Sbjct: 797 GGDDAFAFGLGAGGYDDVEAAFEEVIEDVGGNEAGAACCRILQRLETSFSIPRHSTTNRR 856
Query: 349 EAADPDSLPQVDLPCHGGSPDVVPARAA 432
A+ S+PQ P P +P A
Sbjct: 857 LQAEMPSIPQSRFP---SGPSPIPFHVA 881
>NCU00234.1 NCU00234.1 predicted protein (40954 - 43270)
Length = 690
Score = 28.1 bits (61), Expect = 1.1
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = +2
Query: 122 CIEGTSTDQNSAGTVPATWSRSRLPWEVMSLPPLGSTSMMPI 247
C GTSTD+ + PA S +R P + PLG S + +
Sbjct: 93 CWCGTSTDKEKTLSAPAALSLARPPMPLKVPSPLGHRSFLKL 134
>NCU01370.1 NCU01370.1 hypothetical protein ( (AL353822) related to
origin recognition compl
Length = 603
Score = 26.9 bits (58), Expect = 2.5
Identities = 16/51 (31%), Positives = 21/51 (40%), Gaps = 3/51 (5%)
Frame = -3
Query: 391 KEDLPEAGNRDRRLPEDLRWPSEERFTP---TALLQEQRCCFPQHPPGVAE 248
++D + R RR PED PS+ TP LQ P+ P E
Sbjct: 33 EDDAVPSAKRQRRQPEDGGTPSKRNATPRKQVDFLQRDLASVPEEPESPTE 83
>NCU08334.1 NCU08334.1 predicted protein (5817 - 9381)
Length = 1055
Score = 26.9 bits (58), Expect = 2.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -3
Query: 394 GKEDLPEAGNRDRRLPEDLRWPSEERFTPTALLQEQRCCFPQHPPGVAED 245
G+E +P G + R+ R EE+ +L++ + FP+HPP V E+
Sbjct: 862 GRELVPH-GQKQVRVVSPPR-EKEEKKPIKGILKQPKAQFPEHPPPVREE 909
>NCU02554.1 NCU02554.1 hypothetical protein (164228 - 169299)
Length = 1652
Score = 26.6 bits (57), Expect = 3.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 236 LMSTPRVEGSSPPREGVIWTRLPEL 162
L+ + E SSPP E V WT+L +L
Sbjct: 176 LLDSSETESSSPPWEVVRWTKLLKL 200
>NCU02339.1 NCU02339.1 predicted protein (65853 - 66944)
Length = 363
Score = 26.2 bits (56), Expect = 4.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 309 PPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 178
P FC G V + L G D D G R + +Q R+DL+
Sbjct: 147 PDMFCDLVGPVPAHALGCTVPEGNADTDEAGYRALLAQARQDLN 190
>NCU00285.1 NCU00285.1 predicted protein (246933 - 248696)
Length = 544
Score = 25.8 bits (55), Expect = 5.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -2
Query: 305 RTSARAAVLFPATSSRSCRRWASLMSTP----RVEGSSPPREGVIWTRLPELFLLNSDQL 138
R +A AA + + RR S ST R+ S+PP + V +R+P + L ++
Sbjct: 75 RWNAAAAAVDKVPKAEPMRRMTSQSSTSSHKQRITKSTPPTKRVGRSRVPSVHLTSTSSA 134
Query: 137 KSPL 126
S L
Sbjct: 135 LSKL 138
>NCU08452.1 NCU08452.1 predicted protein (18165 - 21566)
Length = 1133
Score = 25.8 bits (55), Expect = 5.7
Identities = 29/104 (27%), Positives = 41/104 (38%), Gaps = 8/104 (7%)
Frame = +1
Query: 148 EFSRNSSGN--------LVQITPSLGGDEPSTLGVDINDAHLLQLLEDVAGNSTAALAEV 303
EF R++ G+ L+ TPS D+P + V NST L
Sbjct: 521 EFQRSNKGSGPITPRSPLIASTPSNETDQP--------------VASSVTENSTPDLP-- 564
Query: 304 RWA*TVPLTATVDLLEAADPDSLPQVDLPCHGGSPDVVPARAAA 435
+WA T+P + A P P + +P SP+ PAR A
Sbjct: 565 KWA-TIP--------DQAAPT--PAIPVPQQSSSPETAPARITA 597
>NCU09241.1 NCU09241.1 hypothetical protein (12885 - 10072)
Length = 937
Score = 25.4 bits (54), Expect = 7.4
Identities = 14/47 (29%), Positives = 21/47 (43%)
Frame = +1
Query: 151 FSRNSSGNLVQITPSLGGDEPSTLGVDINDAHLLQLLEDVAGNSTAA 291
F +SS + TPS +G D HL +L D+ N ++A
Sbjct: 630 FPSSSSSDDTSDTPSPATSSLGAVGSMATDNHLRPILSDIEANPSSA 676
>NCU08396.1 NCU08396.1 predicted protein (13926 - 15820)
Length = 591
Score = 25.0 bits (53), Expect = 9.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 361 DRRLPEDLRWPSEERFTPTALLQEQRCCFPQHP 263
+ +L + LR PSE + AL + FPQHP
Sbjct: 467 EAQLVKGLRAPSEATPSSFALWHGLKLSFPQHP 499
>NCU08946.1 NCU08946.1 hypothetical protein (51664 - 50757)
Length = 276
Score = 25.0 bits (53), Expect = 9.7
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Frame = -1
Query: 408 RAASMARKIYLRQGIGIGGFQK-IYGGRQRNGSRPPHFCKSSGAVSRNILQE-------- 256
R M K + +G+ Q IY R GSR F + +G V ++ E
Sbjct: 4 RGLDMITKFAIPATVGVALLQNSIYD--VRGGSRAVIFDRVAG-VKDTVVNEGTHFLIPW 60
Query: 255 LQKMGIIDVDPKGGRLITSQGRRDLDQVAGTV 160
LQK I DV K + T+ G +DL V+ T+
Sbjct: 61 LQKAIIFDVRTKPRIIPTTTGSKDLQMVSLTL 92
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3181704
Number of Sequences: 6531
Number of extensions: 77775
Number of successful extensions: 267
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of query: 146
length of database: 3,158,374
effective HSP length: 42
effective length of query: 103
effective length of database: 2,884,072
effective search space: 297059416
effective search space used: 297059416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)