BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_8_G11_T7.seq
(441 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07874.1 NCU07874.1 hypothetical protein (3751 - 1999) 36 0.006
NCU00707.1 NCU00707.1 predicted protein (26010 - 26985) 33 0.047
NCU01495.1 NCU01495.1 hypothetical protein (23085 - 20167) 30 0.23
NCU02736.1 NCU02736.1 predicted protein (84356 - 85261) 30 0.40
NCU02286.1 NCU02286.1 predicted protein (143157 - 146135) 28 0.88
NCU06398.1 NCU06398.1 predicted protein (77924 - 80479) 28 0.88
NCU00453.1 NCU00453.1 hypothetical protein (20452 - 23064) 28 1.2
NCU06739.1 NCU06739.1 hypothetical protein (20522 - 21033) 28 1.5
NCU08616.1 NCU08616.1 DNA-DIRECTED RNA POLYMERASE I POLYPEPTIDE ... 27 3.4
NCU07030.1 NCU07030.1 predicted protein (41218 - 43293) 27 3.4
NCU07179.1 NCU07179.1 hypothetical protein (100189 - 103520) 26 4.4
NCU09048.1 NCU09048.1 hypothetical protein (5348 - 8665) 26 5.7
NCU09506.1 NCU09506.1 predicted protein (31808 - 30219) 26 5.7
NCU06737.1 NCU06737.1 predicted protein (11517 - 13805) 25 7.5
NCU00768.1 NCU00768.1 hypothetical protein (11149 - 9413) 25 9.8
NCU07340.1 NCU07340.1 hypothetical protein (138763 - 140447) 25 9.8
NCU01311.1 NCU01311.1 hypothetical protein (56770 - 59438) 25 9.8
NCU07016.1 NCU07016.1 predicted protein (27578 - 28582) 25 9.8
NCU02362.1 NCU02362.1 predicted protein (55793 - 54508) 25 9.8
>NCU07874.1 NCU07874.1 hypothetical protein (3751 - 1999)
Length = 490
Score = 35.8 bits (81), Expect = 0.006
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = -3
Query: 427 EVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQR 248
+++TG +GY V + +A+ A+ SM+G L ++ I +WA +G ++ + Q+
Sbjct: 225 DMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQ-PSIAQQQAMQQ 283
Query: 247 RSRTP 233
TP
Sbjct: 284 MGLTP 288
Score = 29.6 bits (65), Expect = 0.40
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 409 GKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAF 296
G Y VEY A+ A++++NG ++ I V+WA+
Sbjct: 140 GYNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAY 177
Score = 26.9 bits (58), Expect = 2.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -3
Query: 427 EVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGP 284
E R +G+A ++ E A AI +NG Q+ + + W ++ P
Sbjct: 345 ESRFQADRGFAFIKMDTHENAAMAICQLNGYQVNGRPLKCSWGKDKTP 392
>NCU00707.1 NCU00707.1 predicted protein (26010 - 26985)
Length = 300
Score = 32.7 bits (73), Expect = 0.047
Identities = 18/71 (25%), Positives = 35/71 (48%)
Frame = -3
Query: 436 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARP 257
++ + +G GY +E+ EEA+ A+ S+ G L +++ + GP TS++
Sbjct: 44 ISVDPLSGRNPGYCFIEFTTREEAERALESLAGVDLCGRSVKL------GPCHPKTSSQR 97
Query: 256 AQRRSRTPPRR 224
+ S +P R
Sbjct: 98 REGASASPAPR 108
>NCU01495.1 NCU01495.1 hypothetical protein (23085 - 20167)
Length = 902
Score = 30.4 bits (67), Expect = 0.23
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +2
Query: 164 PRLAQHCRP-SSSLSVCHGSKP---ARWSPRP 247
P AQ C P +SS VCH SKP A + PRP
Sbjct: 743 PAPAQTCHPPASSQQVCHSSKPKPKATYRPRP 774
>NCU02736.1 NCU02736.1 predicted protein (84356 - 85261)
Length = 193
Score = 29.6 bits (65), Expect = 0.40
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -3
Query: 439 VVAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 290
VV + TG +G+ V YG +A+ AI +M+G + + VD A +R
Sbjct: 32 VVVKDRDTGRSRGFGFVRYGNDADAENAIANMDGQE-----VRVDKASDR 76
>NCU02286.1 NCU02286.1 predicted protein (143157 - 146135)
Length = 933
Score = 28.5 bits (62), Expect = 0.88
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 400 YALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQR-RSRTPPRR 224
Y V+Y EE AIR +L + I+++ + + + R +R R R+P RR
Sbjct: 510 YGFVQYHTIEEGLAAIRGCRDVELGGRAINLEISKKQDRTRKEHPERDRERERERSPDRR 569
Query: 223 L 221
L
Sbjct: 570 L 570
>NCU06398.1 NCU06398.1 predicted protein (77924 - 80479)
Length = 825
Score = 28.5 bits (62), Expect = 0.88
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +2
Query: 185 RPSSSLSVCHGSKPARWSP 241
RP+ + +VCH S P RW P
Sbjct: 62 RPTQNRNVCHFSFPGRWKP 80
>NCU00453.1 NCU00453.1 hypothetical protein (20452 - 23064)
Length = 692
Score = 28.1 bits (61), Expect = 1.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = +3
Query: 123 YDIANPWRLQKNTDQGWPNIA------GLAAPS 203
++++N WRL NTD W I G+AAPS
Sbjct: 33 FNLSNFWRLWTNTDNIWTGIRRNKSFHGVAAPS 65
>NCU06739.1 NCU06739.1 hypothetical protein (20522 - 21033)
Length = 145
Score = 27.7 bits (60), Expect = 1.5
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -3
Query: 406 KGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 299
+G+A VEY E+A+ AI +M+ ++L + I V A
Sbjct: 53 RGFAYVEYEDEEDAKEAIDNMDQSELFGRVIRVSAA 88
>NCU08616.1 NCU08616.1 DNA-DIRECTED RNA POLYMERASE I POLYPEPTIDE 2
(RNA POLYMERASE I SUBUNIT
Length = 1234
Score = 26.6 bits (57), Expect = 3.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 332 LCPIHTSDCSLCFLKTSIFNQC 397
LCP+HT D S C L + ++C
Sbjct: 534 LCPVHTPDGSPCGLLNHLAHKC 555
>NCU07030.1 NCU07030.1 predicted protein (41218 - 43293)
Length = 611
Score = 26.6 bits (57), Expect = 3.4
Identities = 13/30 (43%), Positives = 15/30 (49%), Gaps = 9/30 (30%)
Frame = +2
Query: 191 SSSLSVCHGSKP---------ARWSPRPSL 253
+ L CHGS P + WSPRPSL
Sbjct: 145 TKELKFCHGSCPFFGGRSTFWSAWSPRPSL 174
>NCU07179.1 NCU07179.1 hypothetical protein (100189 - 103520)
Length = 803
Score = 26.2 bits (56), Expect = 4.4
Identities = 15/70 (21%), Positives = 31/70 (43%)
Frame = -3
Query: 436 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARP 257
V + +TG YA +E+ + + A M+ + + IHVD++ + + +V +
Sbjct: 284 VIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLIDDRRIHVDFSQSVSKLSDVWRSET 343
Query: 256 AQRRSRTPPR 227
+R R
Sbjct: 344 NSKRKSAARR 353
>NCU09048.1 NCU09048.1 hypothetical protein (5348 - 8665)
Length = 1105
Score = 25.8 bits (55), Expect = 5.7
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Frame = +3
Query: 117 KIYDIANPWRLQKNTDQGWPNIAGLAAPSQYVMAASLRGGVLDRRCAGRALVTFCIGPLL 296
++Y++ +PW ++ N Q +IAG+ A + +R + + C+G
Sbjct: 182 RLYEMRDPWEMKLNQAQKVGDIAGMKAIMTEYIDWEIRQAKSKKDHHSLLNIRICLGLFS 241
Query: 297 NA--------QSTWMVFV 326
A ++TW+ F+
Sbjct: 242 RALTGIMSSDEATWLNFL 259
>NCU09506.1 NCU09506.1 predicted protein (31808 - 30219)
Length = 337
Score = 25.8 bits (55), Expect = 5.7
Identities = 14/44 (31%), Positives = 20/44 (44%)
Frame = +3
Query: 156 NTDQGWPNIAGLAAPSQYVMAASLRGGVLDRRCAGRALVTFCIG 287
N P GL+ S +VM L D C GR ++ +C+G
Sbjct: 232 NNKAKMPKALGLSESSPWVMKWGL-----DVACLGRVMMVWCLG 270
>NCU06737.1 NCU06737.1 predicted protein (11517 - 13805)
Length = 708
Score = 25.4 bits (54), Expect = 7.5
Identities = 17/45 (37%), Positives = 19/45 (41%), Gaps = 3/45 (6%)
Frame = -3
Query: 286 PIQNVTSARPAQRRSRT---PPRRLAAMTY*EGAARPAMLGQPWS 161
P N TS RT PR L A T+ +G PA QP S
Sbjct: 207 PSSNATSDNETSDSERTLTGSPRELHAATHKDGVKPPASPSQPIS 251
>NCU00768.1 NCU00768.1 hypothetical protein (11149 - 9413)
Length = 491
Score = 25.0 bits (53), Expect = 9.8
Identities = 16/60 (26%), Positives = 24/60 (39%)
Frame = -3
Query: 409 GKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRSRTPP 230
GKG V++ A+ AI M G + + + W G QN + R + PP
Sbjct: 306 GKGCGFVQFVHRHAAEMAINQMQGYPIGNSRVRLSW----GRSQNNSGVGTPYRPAPPPP 361
>NCU07340.1 NCU07340.1 hypothetical protein (138763 - 140447)
Length = 521
Score = 25.0 bits (53), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 371 GSTNCNQKYEWDTAV 327
GSTNC EWDT++
Sbjct: 62 GSTNCYSGNEWDTSL 76
>NCU01311.1 NCU01311.1 hypothetical protein (56770 - 59438)
Length = 816
Score = 25.0 bits (53), Expect = 9.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 325 TKTIHVDWAFNRGPIQNVTSARPAQRRSRT 236
T T+H +GP+ N++S RPA+ S T
Sbjct: 603 TSTVHPT---AKGPMANLSSTRPAEEDSTT 629
>NCU07016.1 NCU07016.1 predicted protein (27578 - 28582)
Length = 334
Score = 25.0 bits (53), Expect = 9.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 273 TFCIGPLLNAQSTWMVFVNSCVPFILLIAVCASSKHPYSTNAYPL 407
TF + PLL + ++ SC P +L I C S ++ + P+
Sbjct: 14 TFTLFPLLPTELRLAIWQASCHPRVLEIHYCPSQDRCFTPSKPPV 58
>NCU02362.1 NCU02362.1 predicted protein (55793 - 54508)
Length = 392
Score = 25.0 bits (53), Expect = 9.8
Identities = 17/45 (37%), Positives = 20/45 (43%), Gaps = 1/45 (2%)
Frame = -3
Query: 289 GPIQNVTSARPAQRRSRTPPRRLAAMTY*EGAARPAMLG-QPWSV 158
GP Q T R QRRSR+ R + G + P G PW V
Sbjct: 125 GPAQPSTPPRQQQRRSRSGSRPVGE----RGQSAPPPTGDNPWGV 165
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2908818
Number of Sequences: 6531
Number of extensions: 61289
Number of successful extensions: 171
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of query: 147
length of database: 3,158,374
effective HSP length: 42
effective length of query: 104
effective length of database: 2,884,072
effective search space: 299943488
effective search space used: 299943488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)