BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_9_B05_T7.seq
(405 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01047.1 NCU01047.1 hypothetical protein (136974 - 140135) 37 0.002
NCU00684.1 NCU00684.1 hypothetical protein (379436 - 377702) 28 1.0
NCU00509.1 NCU00509.1 predicted protein (49220 - 46374) 28 1.3
NCU00876.1 NCU00876.1 hypothetical protein (61552 - 63705) 27 1.7
NCU01295.1 NCU01295.1 hypothetical protein (12610 - 9137) 27 1.7
NCU00675.1 NCU00675.1 hypothetical protein (346622 - 350108) 25 6.6
NCU07949.1 NCU07949.1 predicted protein (18120 - 9571) 25 8.6
>NCU01047.1 NCU01047.1 hypothetical protein (136974 - 140135)
Length = 1053
Score = 37.0 bits (84), Expect = 0.002
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Frame = +2
Query: 161 RMVFVSCHLAA------HERKVEK-----RNSECRHITHSLFSKNDIHYAKSADITVWLG 307
R+VFV+CHLA+ +ER++ + + ++ + S++ D T W G
Sbjct: 216 RLVFVNCHLASGIEGTYNERRIWDVGQILGRTRFKPVSFAGVSEDYEEKIGDEDFTFWFG 275
Query: 308 DLNYRLEGMSSMPARKMI 361
DLN+RL+G+ R ++
Sbjct: 276 DLNFRLDGLPGDDIRHLL 293
>NCU00684.1 NCU00684.1 hypothetical protein (379436 - 377702)
Length = 558
Score = 28.1 bits (61), Expect = 1.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 164 MVFVSCHLAAHERKVEKRNSECRHITHSLFSKN 262
+ FV+ HLAA E ++KRN+ R I L N
Sbjct: 180 LTFVATHLAAMEWNLKKRNANWRSIVSGLTFAN 212
Score = 26.2 bits (56), Expect = 3.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 92 NRQSKLRDRDQLLQEAEKGQVFHG 21
N S RDQL QE E G+ HG
Sbjct: 332 NHFSHFLPRDQLTQEREAGRTMHG 355
>NCU00509.1 NCU00509.1 predicted protein (49220 - 46374)
Length = 417
Score = 27.7 bits (60), Expect = 1.3
Identities = 18/67 (26%), Positives = 28/67 (40%), Gaps = 5/67 (7%)
Frame = -1
Query: 207 TLRSWAARWQDTNTIRIPVKFTYLPGRPLDASKENDRGESPE*AKRQRPAAARS*EGSS- 31
+L S+ R + PV + G P D + + D+G+ PE P+A EG
Sbjct: 285 SLPSYYGRQMSDPNLMYPVSPPTMGGSPQDTAGQIDQGQLPETDITSEPSADEQNEGGGE 344
Query: 30 ----LPW 22
+PW
Sbjct: 345 TREYVPW 351
>NCU00876.1 NCU00876.1 hypothetical protein (61552 - 63705)
Length = 717
Score = 27.3 bits (59), Expect = 1.7
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = -1
Query: 120 DASKENDRGESPE*AKRQRPAAARS*EGSSLPWVPRPR 7
DA +E D GE + A+R P+ R + + WV R
Sbjct: 590 DAEEEEDEGEEDKVARRVSPSTRRQKQRVHMLWVTHSR 627
>NCU01295.1 NCU01295.1 hypothetical protein (12610 - 9137)
Length = 839
Score = 27.3 bits (59), Expect = 1.7
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 1/59 (1%)
Frame = -1
Query: 177 DTNTIRIPVKFTYLPGRPLDASKENDRGESP-E*AKRQRPAAARS*EGSSLPWVPRPRP 4
D T F Y P R + ++K +RGES +K +A S LPWV + RP
Sbjct: 466 DYRTPSAQENFDYCPPR-MPSAKAEERGESSTSISKAATSVSASSSPTYELPWVEKYRP 523
>NCU00675.1 NCU00675.1 hypothetical protein (346622 - 350108)
Length = 1125
Score = 25.4 bits (54), Expect = 6.6
Identities = 19/59 (32%), Positives = 29/59 (48%)
Frame = -2
Query: 233 AGIQSSSSPPCVHGLQDGRTQTPSGSQ*SLRTCPGGRSMPARKMIEENRQSKLRDRDQL 57
+ ++ SSSP +G+Q GRT+ S+R+ GG S PA Q + +QL
Sbjct: 884 SNLRPSSSPTGPNGVQAGRTRKT-----SIRSNGGGGS-PAHSTYRAKAQQPVTSVEQL 936
>NCU07949.1 NCU07949.1 predicted protein (18120 - 9571)
Length = 2826
Score = 25.0 bits (53), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 301 ARRLELQIRRNELDASKENDRGESPEXARRQRPAA 405
ARR + RR E +A++ S E ARRQ+ A
Sbjct: 2356 ARRAARRARRAEKEAAERGAAVHSAEEARRQKDEA 2390
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2465574
Number of Sequences: 6531
Number of extensions: 52948
Number of successful extensions: 196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of query: 135
length of database: 3,158,374
effective HSP length: 42
effective length of query: 92
effective length of database: 2,884,072
effective search space: 265334624
effective search space used: 265334624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)