BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_9_B08_T7.seq
(328 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02498.1 NCU02498.1 hypothetical protein (126619 - 123954) 50 2e-07
NCU01574.1 NCU01574.1 hypothetical protein ( hypothetical protei... 29 0.33
NCU07247.1 NCU07247.1 hypothetical protein (14533 - 15999) 28 0.56
NCU00272.1 NCU00272.1 hypothetical protein (184101 - 180904) 28 0.73
NCU01117.1 NCU01117.1 hypothetical protein ( hypothetical protei... 28 0.73
NCU08060.1 NCU08060.1 hypothetical protein (45220 - 43611) 27 1.6
NCU00089.1 NCU00089.1 predicted protein (21689 - 23389) 25 4.7
NCU00576.1 NCU00576.1 hypothetical protein (115044 - 113560) 25 6.2
NCU07706.1 NCU07706.1 predicted protein (67177 - 70579) 25 8.1
>NCU02498.1 NCU02498.1 hypothetical protein (126619 - 123954)
Length = 838
Score = 50.1 bits (118), Expect = 2e-07
Identities = 25/45 (55%), Positives = 31/45 (68%)
Frame = +1
Query: 19 SEVTKQLQARFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA 153
+EV QL RF P+ +IKKRIE L+ RE+LER + D YRYLA
Sbjct: 794 NEVISQLMGRFKPDVPLIKKRIEDLLAREYLERVEGDSSTYRYLA 838
>NCU01574.1 NCU01574.1 hypothetical protein ( hypothetical protein
B13N20.250 [imported] - N
Length = 130
Score = 29.3 bits (64), Expect = 0.33
Identities = 13/42 (30%), Positives = 21/42 (49%), Gaps = 5/42 (11%)
Frame = +1
Query: 208 RKTCRVGTVDLDLGCSSAAESWWL-----GNFRSAIFGTCPG 318
+K ++ LDL C+ A W++ G+FR + G C G
Sbjct: 16 KKRVKISQYHLDLNCNPALVVWYMYYFSRGDFRGKLVGWCSG 57
>NCU07247.1 NCU07247.1 hypothetical protein (14533 - 15999)
Length = 488
Score = 28.5 bits (62), Expect = 0.56
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -1
Query: 328 SSGRPGRYQRWQTGSFQATTTLQ---QNYSQDPSQRYRRDMFFFIHGHWTSNVSTAKENL 158
SSGRP +R + S ++ T + Q D RYR FF + T V T ++
Sbjct: 59 SSGRPSNPRRTTSTSLRSITPVPLAAQALHLDTKLRYRLAAFFLLVSLVTFTVQTELASI 118
Query: 157 ITQDSG 140
+ D G
Sbjct: 119 VQHDLG 124
>NCU00272.1 NCU00272.1 hypothetical protein (184101 - 180904)
Length = 1039
Score = 28.1 bits (61), Expect = 0.73
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 19 SEVTKQLQARFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA 153
+EV Q + R + IK IE LIE++++ER+ + Y YLA
Sbjct: 998 AEVINQTKQRGAVDAADIKANIEKLIEKDYIEREGGN---YVYLA 1039
>NCU01117.1 NCU01117.1 hypothetical protein ( hypothetical protein
13E11.320 [imported] - Ne
Length = 166
Score = 28.1 bits (61), Expect = 0.73
Identities = 17/40 (42%), Positives = 20/40 (49%), Gaps = 8/40 (20%)
Frame = +1
Query: 223 VGTVDLDLGCSS--------AAESWWLGNFRSAIFGTCPG 318
+G + LDL SS A E W LG F A+FG C G
Sbjct: 98 LGLLLLDLDVSSTHISEHSVAVELWELGPFAHALFGLCGG 137
>NCU08060.1 NCU08060.1 hypothetical protein (45220 - 43611)
Length = 493
Score = 26.9 bits (58), Expect = 1.6
Identities = 18/68 (26%), Positives = 30/68 (43%), Gaps = 1/68 (1%)
Frame = +1
Query: 82 IESLIEREFLERDKVDRKLYRYLA*LGFLLLSKH*TSSVHE*-RKTCRVGTVDLDLGCSS 258
+ L E E E ++ R Y +A + + K S V + R+T + +V +G
Sbjct: 74 VGDLAEEEHAEEVEIFRPTYEKVAMEAAVKVEKATVSKVKKNVRRTIAMSSVIASVGAVG 133
Query: 259 AAESWWLG 282
A+ WW G
Sbjct: 134 LAKGWWTG 141
>NCU00089.1 NCU00089.1 predicted protein (21689 - 23389)
Length = 566
Score = 25.4 bits (54), Expect = 4.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 324 AAARAGTKDGRPEVS 280
A+AR G +DGRPEV+
Sbjct: 462 ASARKGLRDGRPEVA 476
>NCU00576.1 NCU00576.1 hypothetical protein (115044 - 113560)
Length = 494
Score = 25.0 bits (53), Expect = 6.2
Identities = 9/27 (33%), Positives = 16/27 (58%)
Frame = -3
Query: 275 HHDSAAELQPRSKSTVPTRHVFLHSWT 195
H ++A + P + ST+ R ++ H WT
Sbjct: 219 HIIASASILPAAGSTINVRTIYAHVWT 245
>NCU07706.1 NCU07706.1 predicted protein (67177 - 70579)
Length = 909
Score = 24.6 bits (52), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -3
Query: 290 RKFPSHHDSAAELQPRSKSTVPTR 219
R+ PS H S + Q RS+ + P+R
Sbjct: 280 RRSPSRHGSPSRAQSRSRPSSPSR 303
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1836813
Number of Sequences: 6531
Number of extensions: 34010
Number of successful extensions: 130
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of query: 109
length of database: 3,158,374
effective HSP length: 42
effective length of query: 66
effective length of database: 2,884,072
effective search space: 190348752
effective search space used: 190348752
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)