BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_9_C06_T7.seq
(651 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00714.1 NCU00714.1 hypothetical protein (51219 - 49352) 42 1e-04
NCU06340.1 NCU06340.1 hypothetical protein (25692 - 24277) 41 2e-04
NCU01433.1 NCU01433.1 hypothetical protein ( serine/threonine pr... 34 0.027
NCU00870.1 NCU00870.1 hypothetical protein (44390 - 46728) 32 0.13
NCU06882.1 NCU06882.1 hypothetical protein (27752 - 24500) 29 1.1
NCU00170.1 NCU00170.1 hypothetical protein (97195 - 94709) 29 1.1
NCU08250.1 NCU08250.1 predicted protein (186022 - 187105) 28 1.9
NCU06935.1 NCU06935.1 predicted protein (11581 - 7538) 28 1.9
NCU06441.1 NCU06441.1 hypothetical protein (99146 - 100943) 27 3.2
NCU06612.1 NCU06612.1 predicted protein (74764 - 71570) 27 5.5
NCU07710.1 NCU07710.1 hypothetical protein (86577 - 92645) 26 7.2
>NCU00714.1 NCU00714.1 hypothetical protein (51219 - 49352)
Length = 578
Score = 42.0 bits (97), Expect = 1e-04
Identities = 25/89 (28%), Positives = 41/89 (45%)
Frame = +3
Query: 18 VLYANRSLCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLDA 197
+LY+NRS D + AL DA + ++PD K R+ TA + A A
Sbjct: 39 ILYSNRSAAYASKKDWDNALKDAEKTTEIKPDWPKGWGRKGTALFGKGDLLGANDAYEQG 98
Query: 198 QKLDPGNAEIERELRKARELMKNHPAEGE 284
K+DP NA ++++ + M+ G+
Sbjct: 99 LKIDPNNAGMKKDFEAVQRAMQQEAGGGD 127
Score = 29.3 bits (64), Expect = 0.85
Identities = 24/85 (28%), Positives = 40/85 (46%), Gaps = 6/85 (7%)
Frame = +3
Query: 24 YANRSLCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLDAQK 203
Y+NR+ + + + AL D P +A R+A + ++EY + A +A+K
Sbjct: 423 YSNRAAAFMKLLEFPSALEDCETAIKKDPKFIRAYIRKAQIYFGMREYSKCVDACTEARK 482
Query: 204 LDP-----GNA-EIERELRKARELM 260
+D NA EIE+ +KA M
Sbjct: 483 IDAEYHNGANAREIEQLEQKAFNAM 507
>NCU06340.1 NCU06340.1 hypothetical protein (25692 - 24277)
Length = 471
Score = 41.2 bits (95), Expect = 2e-04
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = +3
Query: 15 EVLYANRSLCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLD 194
E LY NR+ C L + + D L P KA YR A + + + +A A
Sbjct: 214 ETLYCNRAACHLSLANYRSCTLDCAAALRLNPSNLKALYRSGRALLSVSKIAEADDACAR 273
Query: 195 AQKLDPGNAEIERELR----KARELMKNHPAE 278
++DP NA +++ R K E+ + AE
Sbjct: 274 GLEIDPSNAALKQLARDLIAKNEEITRKQRAE 305
>NCU01433.1 NCU01433.1 hypothetical protein ( serine/threonine
protein phosphatase ppt1 [imp
Length = 479
Score = 34.3 bits (77), Expect = 0.027
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +3
Query: 24 YANRSLCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLDAQK 203
++NR+ L A+ DA + L P KA YR+ATA+ + K+A K
Sbjct: 45 WSNRAQAHLKTEAYGYAIRDATKAIELNPGFVKAYYRRATAYAAILNPKEAVKDFKTCVK 104
Query: 204 LDPGNAEIERELRKARELMK 263
+ P N + + +L + ++++
Sbjct: 105 IAPDNKDAKLKLVECEKIVR 124
>NCU00870.1 NCU00870.1 hypothetical protein (44390 - 46728)
Length = 724
Score = 32.0 bits (71), Expect = 0.13
Identities = 24/76 (31%), Positives = 36/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 21 LYANRSLCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLDAQ 200
+Y R+ LL+G + A +DAL R+ KA Y A L EY + +A
Sbjct: 232 VYTKRAGVNLLLGRYDAAKADALASRIGASTDWKAYYNAGRAAYGLCEYATSKSYFEEAL 291
Query: 201 KL-DPGNAEIERELRK 245
KL D G A +++E +
Sbjct: 292 KLNDKGTANVQKEYER 307
>NCU06882.1 NCU06882.1 hypothetical protein (27752 - 24500)
Length = 617
Score = 28.9 bits (63), Expect = 1.1
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Frame = +3
Query: 39 LCKLLMGDGEGALSDALRCRMLRPDCAKACYRQATAHMLLKEYKQA--------CHALLD 194
+C + DG+G S A++C C CYRQ + + +E + A C+ ++D
Sbjct: 219 MCDICCEDGDGLESFAIKCG--HRYCVD-CYRQYLSQKIREEGEAARIQCPADGCNLIID 275
Query: 195 AQKLD 209
A+ LD
Sbjct: 276 ARSLD 280
>NCU00170.1 NCU00170.1 hypothetical protein (97195 - 94709)
Length = 784
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = +3
Query: 99 MLRPDCAKACYRQATAHMLLKEYKQACHALLDAQKLDPGNAEI 227
+L+P+ A +A A+M +YK A A +LDP N +I
Sbjct: 320 VLQPESATYLGNRAAAYMSAGKYKDALEDCTRAAELDPNNPKI 362
>NCU08250.1 NCU08250.1 predicted protein (186022 - 187105)
Length = 336
Score = 28.1 bits (61), Expect = 1.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 9 AAEVLYANRSLCKLLMGDGEG 71
AA+VLYA CK L+ DG G
Sbjct: 307 AADVLYAGHGQCKRLLTDGNG 327
>NCU06935.1 NCU06935.1 predicted protein (11581 - 7538)
Length = 1347
Score = 28.1 bits (61), Expect = 1.9
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 78 SDALRCRMLRPDCAKACYRQATAHMLLKEYKQACHALLDAQKLDPGNAEIERELRKAREL 257
SD R R + + K RQ L E ++ L+ QKL+ +EREL++ +EL
Sbjct: 351 SDQQRLRQQQMENQKLRQRQVEEERL--EAQKIKERRLELQKLEQEKLRLERELQEHQEL 408
Query: 258 MKNHPAEGEQ 287
++ E ++
Sbjct: 409 LEKQRLEQQK 418
>NCU06441.1 NCU06441.1 hypothetical protein (99146 - 100943)
Length = 551
Score = 27.3 bits (59), Expect = 3.2
Identities = 19/71 (26%), Positives = 32/71 (44%)
Frame = +3
Query: 111 DCAKACYRQATAHMLLKEYKQACHALLDAQKLDPGNAEIERELRKARELMKNHPAEGEQ* 290
+ A+ +R+A H+ L + +D G+ + R++ K KN P EGE
Sbjct: 313 EAAQQAFREAKGHL--------SEILSAFELMDAGSQALVRQVTK-----KNSPLEGEYP 359
Query: 291 RACMC*TAGCN 323
C+ T+G N
Sbjct: 360 FYCLIETSGSN 370
>NCU06612.1 NCU06612.1 predicted protein (74764 - 71570)
Length = 1043
Score = 26.6 bits (57), Expect = 5.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 177 CHAL-LDAQKLDPGNAEIERELRKARELMKNHPAE 278
CH L +D+ KLDP +ER+ R A L++ E
Sbjct: 44 CHGLTVDSLKLDPWKGVLERDARIAATLIQTEFGE 78
>NCU07710.1 NCU07710.1 hypothetical protein (86577 - 92645)
Length = 2004
Score = 26.2 bits (56), Expect = 7.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 608 QEPDTIIHXTCIPERPSDHER*EALHRNWIIGI 510
+ PDT+ + I +RPS R R W + +
Sbjct: 39 RSPDTVSSNSTIRDRPSSSSRRSRFERRWTVTV 71
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3800587
Number of Sequences: 6531
Number of extensions: 76522
Number of successful extensions: 221
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of query: 217
length of database: 3,158,374
effective HSP length: 44
effective length of query: 172
effective length of database: 2,871,010
effective search space: 493813720
effective search space used: 493813720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)