BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_9_E03_T7.seq
         (318 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU06878.1 NCU06878.1 predicted protein (16928 - 17753)                32  0.048
NCU09829.1 NCU09829.1 predicted protein (27464 - 24273)                26  3.5
NCU06935.1 NCU06935.1 predicted protein (11581 - 7538)                 25  4.5
NCU07362.1 NCU07362.1 hypothetical protein (378 - 2216)                25  5.9
NCU06930.1 NCU06930.1 predicted protein (178829 - 185763)              25  5.9

>NCU06878.1 NCU06878.1 predicted protein (16928 - 17753)
          Length = 248

 Score = 32.0 bits (71), Expect = 0.048
 Identities = 17/31 (54%), Positives = 19/31 (60%)
 Frame = +2

Query: 5   GRGRGRVVTPSPHKTFRCADMKSTVDGTCGG 97
           GRG GR VTPS   T R A  +ST +G  GG
Sbjct: 214 GRGVGRGVTPSSRTTSRGAITRSTSNGRVGG 244



>NCU09829.1 NCU09829.1 predicted protein (27464 - 24273)
          Length = 917

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 291 HHQPFSREKTH*PRHDDSSIHIVGRIARPTHKHRH-HDCSSH 169
           H  P SR  TH P    SS H     A+  H+H+H H    H
Sbjct: 201 HPSPLSR--THSPHGSVSSDHTYHTPAQYQHQHQHQHQSQQH 240



>NCU06935.1 NCU06935.1 predicted protein (11581 - 7538)
          Length = 1347

 Score = 25.4 bits (54), Expect = 4.5
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
 Frame = -1

Query: 306 PGRYKHHQPFSREKTH*PRHDDSSIHIVGRIARPTHKH--------RHHDCSSHLSFILG 151
           P R +   PF+ +  H  +   SS     + + P H H        R  D   +  +   
Sbjct: 252 PPRKRSGSPFAEDDVHPTKRHHSSGRYPEQHSAPQHWHPDNNRSPLRKSDKDEYHGWHQF 311

Query: 150 GTPRLSLKP*TDQCFLHGPPQVP 82
           G     L P +++ FL  PP  P
Sbjct: 312 GERLPPLGPRSEEAFLFRPPTAP 334



>NCU07362.1 NCU07362.1 hypothetical protein (378 - 2216)
          Length = 520

 Score = 25.0 bits (53), Expect = 5.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 162 SSDEMSSHGAYACVWVVLYGQQY 230
           +++E++ H +    WVVLYG  Y
Sbjct: 9   TAEEVAKHRSPKSCWVVLYGNVY 31



>NCU06930.1 NCU06930.1 predicted protein (178829 - 185763)
          Length = 2221

 Score = 25.0 bits (53), Expect = 5.9
 Identities = 9/27 (33%), Positives = 16/27 (58%)
 Frame = +3

Query: 186 GAYACVWVVLYGQQYVYCYRRVLVNVF 266
           G +  +W+ LYG Q +  +R  ++N F
Sbjct: 468 GVFENLWIPLYGYQGIVWFRIDMLNTF 494



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2065523
Number of Sequences: 6531
Number of extensions: 45246
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of query: 106
length of database: 3,158,374
effective HSP length: 42
effective length of query: 63
effective length of database: 2,884,072
effective search space: 181696536
effective search space used: 181696536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)