Score E
Sequences producing significant alignments: (bits) Value
sp|P40978|RS19_ORYSA 40S RIBOSOMAL PROTEIN S19 133 5e-31
emb|CAA10125.1| (AJ012684) 40S ribosomal protein S19 [Cicer... 108 1e-23
ref|NP_200925.1| 40S ribsomal protein S19 - like [Arabidops... 105 9e-23
ref|NP_197056.1| 40S RIBOSOMAL PROTEIN S19 - like [Arabidop... 104 2e-22
ref|NP_186857.1| putative 40S ribosomal protein S19 [Arabid... 103 6e-22
sp|Q94613|RS19_MYAAR 40S RIBOSOMAL PROTEIN S19 >gi|7440498|... 92 1e-18
sp|Q9Y0H3|RS19_MYXGL 40S RIBOSOMAL PROTEIN S19 >gi|4929807|... 79 9e-15
ref|NP_075622.1| ribosomal protein S19 [Mus musculus] >gi|1... 79 9e-15
dbj|BAB27994.1| (AK012052) putative [Mus musculus] 79 1e-14
gb|AAG13287.1|AF266167_1 (AF266167) ribosomal protein S19 [... 77 3e-14
ref|NP_001013.1| ribosomal protein S19; 40S ribosomal prote... 77 4e-14
sp|Q29308|RS19_PIG 40S RIBOSOMAL PROTEIN S19 75 2e-13
gb|AAK92188.1|AF400216_1 (AF400216) ribosomal protein S19 [... 75 2e-13
gb|AAK95202.1|AF402828_1 (AF402828) 40S ribosomal protein S... 74 3e-13
sp|P39018|RS19_DROME 40S RIBOSOMAL PROTEIN S19 >gi|396531|e... 71 3e-12
gb|AAF48633.1| (AE003503) RpS19 gene product [Drosophila me... 71 3e-12
sp|P27073|RS19_EMENI 40S RIBOSOMAL PROTEIN S19 (S16) >gi|83... 69 9e-12
ref|NP_014520.1| 40S ribosomal protein S19A (S16aA) (rp55A)... 69 9e-12
ref|NP_014097.1| Ribosomal protein S19B (rp55B) (S16aB) (YS... 69 9e-12
gb|AAF56207.1| (AE003745) CG5338 gene product [Drosophila m... 69 1e-11
sp|O18650|RS19_CAEEL 40S RIBOSOMAL PROTEIN S19 >gi|7507215|... 66 1e-10
sp|P79016|RS19_SCHPO 40S RIBOSOMAL PROTEIN S19 (S16) >gi|74... 65 2e-10
sp|P58234|R19A_SCHPO 40S RIBOSOMAL PROTEIN S19-A (S16-A) >g... 65 2e-10
dbj|BAA19213.1| (AB000915) ribosomal protein S16 homolog [S... 65 2e-10
sp|P39698|R19S_ASCSU 40S RIBOSOMAL PROTEIN S19S >gi|2119096... 64 4e-10
ref|NP_070893.1| SSU ribosomal protein S19E (rps19E) [Archa... 64 5e-10
sp|P54057|R19E_METJA 30S RIBOSOMAL PROTEIN S19E >gi|2129264... 62 2e-09
ref|NP_147710.1| 30S ribosomal protein S19 [Aeropyrum perni... 61 2e-09
emb|CAA53231.1| (X75543) ribosomal protein S19 [Ascaris suum] 59 2e-08
sp|P24494|R19G_ASCSU 40S RIBOSOMAL PROTEIN S19G (ELIMINATED... 59 2e-08
sp|O27653|R19E_METTH 30S RIBOSOMAL PROTEIN S19E >gi|7440495... 55 2e-07
gb|AAK40685.1| (AE006669) SSU ribosomal protein S19E (rps19... 55 2e-07
ref|NP_143212.1| 30S ribosomal protein S19 [Pyrococcus hori... 54 4e-07
ref|NP_126504.1| SSU ribosomal protein S19E [Pyrococcus aby... 54 4e-07
sp|O15631|RS19_ENTHI 40S RIBOSOMAL PROTEIN S19 >gi|2351009|... 49 2e-05
emb|CAC11198.1| (AL445063) ribosomal protein S19 related pr... 38 0.022
gb|AAG20178.1| (AE005095) 30S ribosomal protein S19E; Rps19... 37 0.065
ref|NP_110526.1| 30S ribosomal protein S16A [Thermoplasma v... 35 0.25
gb|AAD51077.1|AF175724_1 (AF175724) immunoreactive 87kD ant... 33 0.94
gb|AAH09346.1|AAH09346 (BC009346) Unknown (protein for MGC:... 33 0.94
ref|NP_103564.1| probable riboflavin-specific deaminase [Me... 30 8.0
dbj|BAB02841.1| (AB025634) UTP-glucose glucosyltransferase ... 30 8.0
ref|NP_013613.1| Yml096wp [Saccharomyces cerevisiae] >gi|24... 30 8.0
ref|NP_188816.1| putative UDP-glucose glucosyltransferase [... 30 8.0
gb|AAD27529.1| (AF105955) envelope glycoprotein [Human immu... 30 8.0
gb|AAD27527.1| (AF105953) envelope glycoprotein [Human immu... 30 8.0
>sp|P40978|RS19_ORYSA 40S RIBOSOMAL PROTEIN S19
Length = 146
Score = 133 bits (334), Expect = 5e-31
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
GGFQKIYGGRQRNGSRPPHFCKSSGA+SRNILQ+LQKMGIIDVDPKGGRLITSQGRRDLD
Sbjct: 76 GGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLD 135
Query: 234 QVAGTV 217
QVAG V
Sbjct: 136 QVAGRV 141
>emb|CAA10125.1| (AJ012684) 40S ribosomal protein S19 [Cicer arietinum]
Length = 105
Score = 108 bits (270), Expect = 1e-23
Identities = 49/66 (74%), Positives = 58/66 (87%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G FQ+IYGG QRNGSRPPHFCKSSG+++R+ILQ+LQ M II++D KGGR ITS GRRDLD
Sbjct: 36 GAFQRIYGGSQRNGSRPPHFCKSSGSIARHILQQLQNMNIIEMDTKGGRKITSSGRRDLD 95
Query: 234 QVAGTV 217
QVAG +
Sbjct: 96 QVAGRI 101
>ref|NP_200925.1| 40S ribsomal protein S19 - like [Arabidopsis thaliana]
dbj|BAB10379.1| (AB006696) 40S ribosomal protein S19 [Arabidopsis thaliana]
Length = 143
Score = 105 bits (263), Expect = 9e-23
Identities = 48/68 (70%), Positives = 58/68 (84%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G F++IYGG +RNGSRPPHFCKSSG V+R+ILQ+LQ M I+D+D KGGR ITS G+RDLD
Sbjct: 74 GAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLD 133
Query: 234 QVAGTVPA 211
QVAG + A
Sbjct: 134 QVAGRIAA 141
>ref|NP_197056.1| 40S RIBOSOMAL PROTEIN S19 - like [Arabidopsis thaliana]
pir||T51530 40S RIBOSOMAL PROTEIN S19-like - Arabidopsis thaliana
emb|CAC01751.1| (AL391143) 40S RIBOSOMAL PROTEIN S19-like [Arabidopsis thaliana]
Length = 143
Score = 104 bits (260), Expect = 2e-22
Identities = 46/69 (66%), Positives = 59/69 (84%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G F++IYGG +RNGSRPPHFCKSSG ++R+ILQ+L+ M I+++D KGGR ITS G+RDLD
Sbjct: 74 GAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLD 133
Query: 234 QVAGTVPAE 208
QVAG + AE
Sbjct: 134 QVAGRIAAE 142
>ref|NP_186857.1| putative 40S ribosomal protein S19 [Arabidopsis thaliana]
gb|AAF14828.1|AC011664_10 (AC011664) putative 40S ribosomal protein S19 [Arabidopsis
thaliana]
gb|AAK44092.1|AF370277_1 (AF370277) putative 40S ribosomal protein S19 [Arabidopsis
thaliana]
Length = 143
Score = 103 bits (256), Expect = 6e-22
Identities = 45/69 (65%), Positives = 58/69 (83%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G F++IYGG +RNGSRPPHFCKSSG ++R+ILQ+L+ M I+++D KGGR ITS G+RDLD
Sbjct: 74 GAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLD 133
Query: 234 QVAGTVPAE 208
QVAG + E
Sbjct: 134 QVAGRIAVE 142
>sp|Q94613|RS19_MYAAR 40S RIBOSOMAL PROTEIN S19
pir||T09674 ribosomal protein S19 - Mya arenaria
gb|AAB09536.1| (U63092) ribosomal protein S19 [Mya arenaria]
Length = 149
Score = 92.0 bits (227), Expect = 1e-18
Identities = 38/70 (54%), Positives = 54/70 (76%)
Frame = -3
Query: 426 PGRFGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGR 247
P G F+KIYGGR+R G+ P HFCK++G++SR +LQ L+ + I++ DP GGR +TSQGR
Sbjct: 68 PAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGR 127
Query: 246 RDLDQVAGTV 217
RDLD++A +
Sbjct: 128 RDLDRIAAQI 137
>sp|Q9Y0H3|RS19_MYXGL 40S RIBOSOMAL PROTEIN S19
gb|AAD34164.1|AF153049_1 (AF153049) 40S ribosomal protein S19 [Myxine glutinosa]
Length = 145
Score = 79.3 bits (194), Expect = 9e-15
Identities = 34/66 (51%), Positives = 49/66 (73%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G KIYGGRQRNG+RP H+ + S V+R +LQ L+ + +++ DP GGR +TS G+RD+D
Sbjct: 73 GAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMD 132
Query: 234 QVAGTV 217
++AG V
Sbjct: 133 RIAGQV 138
>ref|NP_075622.1| ribosomal protein S19 [Mus musculus]
sp|P17074|RS19_RAT 40S RIBOSOMAL PROTEIN S19
pir||R3RT19 ribosomal protein S19, cytosolic [validated] - rat
emb|CAA36003.1| (X51707) ribosomal protein S19 (AA 1-145) [Rattus rattus]
gb|AAF65683.1|AF216207_1 (AF216207) ribosomal protein S19 [Mus musculus]
dbj|BAB28898.1| (AK013524) putative [Mus musculus]
dbj|BAB31370.1| (AK018725) putative [Mus musculus]
Length = 145
Score = 79.3 bits (194), Expect = 9e-15
Identities = 36/68 (52%), Positives = 49/68 (71%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G KIYGGRQRNG RP HF + S +V+R +LQ L+ + +++ D GGR +T QG+RDLD
Sbjct: 73 GSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLD 132
Query: 234 QVAGTVPA 211
++AG V A
Sbjct: 133 RIAGQVAA 140
>dbj|BAB27994.1| (AK012052) putative [Mus musculus]
Length = 212
Score = 79.0 bits (193), Expect = 1e-14
Identities = 39/74 (52%), Positives = 53/74 (70%), Gaps = 1/74 (1%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G KIYGGRQRNG RP HF + S +V+R +LQ L+ + +++ D GGR +T QG+RDLD
Sbjct: 73 GSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLD 132
Query: 234 QVAGTV-PAEF*SVE 193
++AG V A + SVE
Sbjct: 133 RIAGQVRGARYASVE 147
>gb|AAG13287.1|AF266167_1 (AF266167) ribosomal protein S19 [Gillichthys mirabilis]
Length = 147
Score = 77.4 bits (189), Expect = 3e-14
Identities = 36/68 (52%), Positives = 48/68 (69%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G KIYGGRQRNG P H+ + S V+R +LQ L+ + +I+ DP GGR +T+QG RDLD
Sbjct: 73 GSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLD 132
Query: 234 QVAGTVPA 211
++AG V A
Sbjct: 133 RIAGQVSA 140
>ref|NP_001013.1| ribosomal protein S19; 40S ribosomal protein S19 [Homo sapiens]
ref|XP_029926.1| ribosomal protein S19 [Homo sapiens]
sp|P39019|RS19_HUMAN 40S RIBOSOMAL PROTEIN S19
pir||I52692 ribosomal protein S19, cytosolic - human
gb|AAA89070.1| (M81757) S19 ribosomal protein [Homo sapiens]
gb|AAD13668.1| (AF092907) ribosomal protein S19; RPS19 [Homo sapiens]
gb|AAH00023.1|AAH00023 (BC000023) ribosomal protein S19 [Homo sapiens]
gb|AAH07615.1|AAH07615 (BC007615) ribosomal protein S19 [Homo sapiens]
Length = 145
Score = 77.0 bits (188), Expect = 4e-14
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G KIYGGRQRNG P HF + S +V+R +LQ L+ + +++ D GGR +T QG+RDLD
Sbjct: 73 GSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLD 132
Query: 234 QVAGTVPA 211
++AG V A
Sbjct: 133 RIAGQVAA 140
>sp|Q29308|RS19_PIG 40S RIBOSOMAL PROTEIN S19
Length = 136
Score = 74.7 bits (182), Expect = 2e-13
Identities = 33/64 (51%), Positives = 46/64 (71%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G KIYGGRQRNG P HF + S +V+R +LQ L+ + +++ D GGR +T QG+RDLD
Sbjct: 73 GSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLD 132
Query: 234 QVAG 223
++AG
Sbjct: 133 RIAG 136
>gb|AAK92188.1|AF400216_1 (AF400216) ribosomal protein S19 [Spodoptera frugiperda]
Length = 153
Score = 74.7 bits (182), Expect = 2e-13
Identities = 32/62 (51%), Positives = 47/62 (75%)
Frame = -3
Query: 402 KIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVAG 223
KI+GGR+RNG P HFC+SSG+++R LQ L+ + +++ GGR++T QGRRDLD++A
Sbjct: 77 KIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKMVEKVQDGGRILTVQGRRDLDRIAA 136
Query: 222 TV 217
V
Sbjct: 137 QV 138
>gb|AAK95202.1|AF402828_1 (AF402828) 40S ribosomal protein S19 [Ictalurus punctatus]
Length = 147
Score = 74.3 bits (181), Expect = 3e-13
Identities = 35/68 (51%), Positives = 46/68 (67%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G KIYGGR+RNG P HF S V+R +LQ L+ + +++ DP GGR +T QG RDLD
Sbjct: 75 GSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQALEALKMVEKDPNGGRRLTPQGTRDLD 134
Query: 234 QVAGTVPA 211
++AG V A
Sbjct: 135 RIAGQVAA 142
>sp|P39018|RS19_DROME 40S RIBOSOMAL PROTEIN S19
emb|CAA51677.1| (X73153) ribosomal protein S19 [Drosophila melanogaster]
Length = 156
Score = 70.9 bits (172), Expect = 3e-12
Identities = 30/70 (42%), Positives = 45/70 (63%)
Frame = -3
Query: 426 PGRFGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGR 247
P G KIYGGR+RNG P HFC+++ +R LQ L+ +++ P GGR ++S G+
Sbjct: 69 PAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQ 128
Query: 246 RDLDQVAGTV 217
RDLD++A +
Sbjct: 129 RDLDRIANQI 138
>gb|AAF48633.1| (AE003503) RpS19 gene product [Drosophila melanogaster]
gb|AAF65682.1|AF216206_1 (AF216206) ribosomal protein S19 [Drosophila melanogaster]
Length = 156
Score = 70.9 bits (172), Expect = 3e-12
Identities = 30/70 (42%), Positives = 45/70 (63%)
Frame = -3
Query: 426 PGRFGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGR 247
P G KIYGGR+RNG P HFC+++ +R LQ L+ +++ P GGR ++S G+
Sbjct: 69 PAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQ 128
Query: 246 RDLDQVAGTV 217
RDLD++A +
Sbjct: 129 RDLDRIANQI 138
>sp|P27073|RS19_EMENI 40S RIBOSOMAL PROTEIN S19 (S16)
pir||JQ1349 ribosomal protein S19.e, cytosolic - Emericella nidulans
gb|AAA33322.1| (M65259) ribosomal protein S16 [Emericella nidulans]
Length = 148
Score = 69.3 bits (168), Expect = 9e-12
Identities = 33/69 (47%), Positives = 47/69 (67%), Gaps = 1/69 (1%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVD-PKGGRLITSQGRRDL 238
G +K++G + GSRP H +SGAV R +LQ L+K+G+++ D KGGR IT G+RDL
Sbjct: 73 GRLRKVHGSTKNRGSRPAHHVDASGAVDRKVLQSLEKIGVLEQDEEKGGRRITQSGQRDL 132
Query: 237 DQVAGTVPAE 208
D++A T E
Sbjct: 133 DRIAKTTVDE 142
>ref|NP_014520.1| 40S ribosomal protein S19A (S16aA) (rp55A) (YS16A); Rps19ap
[Saccharomyces cerevisiae]
sp|P07280|R19A_YEAST 40S RIBOSOMAL PROTEIN S19-A (S16A) (YS16) (RP55) (YP45)
pir||R3BY9E ribosomal protein S19.e.A, cytosolic - yeast (Saccharomyces
cerevisiae)
emb|CAA26482.1| (X02635) S16A (rp55) [Saccharomyces cerevisiae]
emb|CAA99140.1| (Z74863) ORF YOL121c [Saccharomyces cerevisiae]
emb|CAA64549.1| (X95258) ribosomal protein S19.e [Saccharomyces cerevisiae]
Length = 144
Score = 69.3 bits (168), Expect = 9e-12
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G K+YGG + G RP +SG+++R +LQ L+K+GI+++ PKGGR I+ G+RDLD
Sbjct: 74 GKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLD 133
Query: 234 QVA 226
++A
Sbjct: 134 RIA 136
>ref|NP_014097.1| Ribosomal protein S19B (rp55B) (S16aB) (YS16B); Rps19bp
[Saccharomyces cerevisiae]
sp|P07281|R19B_YEAST 40S RIBOSOMAL PROTEIN S19-B (S16B) (YS16) (RP55)
pir||S60398 ribosomal protein S19.e.B, cytosolic - yeast (Saccharomyces
cerevisiae)
emb|CAA25575.1| (X01100) S16A (rp 55) [Saccharomyces pastorianus]
gb|AAC49096.1| (U23084) ribosomal protein Rp55ap [Saccharomyces cerevisiae]
emb|CAA96220.1| (Z71578) ORF YNL302c [Saccharomyces cerevisiae]
Length = 144
Score = 69.3 bits (168), Expect = 9e-12
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G K+YGG + G RP +SG+++R +LQ L+K+GI+++ PKGGR I+ G+RDLD
Sbjct: 74 GKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLD 133
Query: 234 QVA 226
++A
Sbjct: 134 RIA 136
>gb|AAF56207.1| (AE003745) CG5338 gene product [Drosophila melanogaster]
Length = 155
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/73 (42%), Positives = 45/73 (61%)
Frame = -3
Query: 426 PGRFGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGR 247
P G F K+Y GR+RNG RP C+SS R LQ L+ +++ P GGR +T QG+
Sbjct: 69 PAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGGRKLTPQGQ 128
Query: 246 RDLDQVAGTVPAE 208
R+LD++A + A+
Sbjct: 129 RNLDRIANKIVAK 141
>sp|O18650|RS19_CAEEL 40S RIBOSOMAL PROTEIN S19
pir||T24535 ribosomal protein S19 - Caenorhabditis elegans
pir||T42212 ribosomal protein S19 - Caenorhabditis elegans
gb|AAB69445.1| (AF016512) ribosomal protein S19 [Caenorhabditis elegans]
emb|CAB04689.1| (Z81586) predicted using Genefinder~contains similarity to Pfam
domain: PF01090 (Ribosomal protein S19e), Score=277.7,
E-value=4.8e-80, N=1~cDNA EST yk637d2.3 comes from this
gene~cDNA EST yk637d2.5 comes from this gene~cDNA EST
yk211d8.3 comes from th>
Length = 146
Score = 65.9 bits (159), Expect = 1e-10
Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = -3
Query: 429 RPGRFGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKG-GRLITSQ 253
RP G F+K+YGG +R G P HF S+G R +Q+L+K+ ++ P G GR+++ Q
Sbjct: 68 RPAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQ 127
Query: 252 GRRDLDQVA 226
GR+DLD++A
Sbjct: 128 GRKDLDRIA 136
>sp|P79016|RS19_SCHPO 40S RIBOSOMAL PROTEIN S19 (S16)
pir||T40595 40s ribosomal protein - fission yeast (Schizosaccharomyces pombe)
emb|CAA19044.1| (AL023587) 40s ribosomal protein s19 [Schizosaccharomyces pombe]
Length = 143
Score = 64.7 bits (156), Expect = 2e-10
Identities = 28/63 (44%), Positives = 41/63 (64%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G K+YGG G RP H SG+V R ++Q L+K+G+++ GGR I+ QG+RDLD
Sbjct: 73 GRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLD 132
Query: 234 QVA 226
++A
Sbjct: 133 RIA 135
>sp|P58234|R19A_SCHPO 40S RIBOSOMAL PROTEIN S19-A (S16-A)
pir||T50357 40s ribosomal protein s19.1/S19A [imported] - fission yeast
(Schizosaccharomyces pombe)
emb|CAB76049.1| (AL157918) 40s ribosomal protein s19.1/S19A [Schizosaccharomyces
pombe]
Length = 144
Score = 64.7 bits (156), Expect = 2e-10
Identities = 28/63 (44%), Positives = 41/63 (64%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G K+YGG G RP H SG+V R ++Q L+K+G+++ GGR I+ QG+RDLD
Sbjct: 73 GRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLD 132
Query: 234 QVA 226
++A
Sbjct: 133 RIA 135
>dbj|BAA19213.1| (AB000915) ribosomal protein S16 homolog [Schizosaccharomyces
pombe]
Length = 137
Score = 64.7 bits (156), Expect = 2e-10
Identities = 28/63 (44%), Positives = 41/63 (64%)
Frame = -3
Query: 414 GGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLD 235
G K+YGG G RP H SG+V R ++Q L+K+G+++ GGR I+ QG+RDLD
Sbjct: 66 GRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLD 125
Query: 234 QVA 226
++A
Sbjct: 126 RIA 128
>sp|P39698|R19S_ASCSU 40S RIBOSOMAL PROTEIN S19S
pir||A54581 ribosomal protein S19.e - pig roundworm
emb|CAA82999.1| (Z30344) ribosomal protein S19S [Ascaris suum]
Length = 150
Score = 63.9 bits (154), Expect = 4e-10
Identities = 29/67 (43%), Positives = 45/67 (66%), Gaps = 1/67 (1%)
Frame = -3
Query: 426 PGRFGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKG-GRLITSQG 250
P G +++YGG +R G P HF ++SG+V R LQ L+ + ++ P G GR++T QG
Sbjct: 70 PTGVGALRRVYGGNKRRGVTPNHFARASGSVIRKALQTLEAIKWVEKHPDGNGRILTKQG 129
Query: 249 RRDLDQVA 226
R+DLD++A
Sbjct: 130 RKDLDRIA 137
>ref|NP_070893.1| SSU ribosomal protein S19E (rps19E) [Archaeoglobus fulgidus]
sp|O28210|R19E_ARCFU 30S RIBOSOMAL PROTEIN S19E
pir||D69508 SSU ribosomal protein S19E (rps19E) homolog - Archaeoglobus
fulgidus
gb|AAB89186.1| (AE000961) SSU ribosomal protein S19E (rps19E) [Archaeoglobus
fulgidus]
Length = 147
Score = 63.5 bits (153), Expect = 5e-10
Identities = 32/73 (43%), Positives = 50/73 (67%)
Frame = -3
Query: 396 YGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVAGTV 217
YGGR+R GS+PP F K SGA+ RN L +L+++G + + GR++T GR LD+VA +
Sbjct: 75 YGGRKRRGSKPPKFRKGSGAIVRNALHQLEQLGFVK-KTREGRVVTPMGRSFLDKVATEL 133
Query: 216 PAEF*SVEVPSMQ 178
+E S E+P+++
Sbjct: 134 KSELVS-EIPALE 145
>sp|P54057|R19E_METJA 30S RIBOSOMAL PROTEIN S19E
pir||D64386 ribosomal protein S19S - Methanococcus jannaschii
gb|AAB98687.1| (U67516) SSU ribosomal protein S19E [Methanococcus jannaschii]
Length = 148
Score = 61.6 bits (148), Expect = 2e-09
Identities = 31/72 (43%), Positives = 47/72 (65%)
Frame = -3
Query: 396 YGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVAGTV 217
YGGR+ G P HF K SG + R LQEL+K+G+++ P+ GR++T +GR LD +A V
Sbjct: 76 YGGRKNRGHEPEHFYKGSGNIIRKALQELEKLGLVEKTPE-GRVVTPKGRSFLDNIAKEV 134
Query: 216 PAEF*SVEVPSM 181
E + E+P++
Sbjct: 135 RDEIIN-EIPAL 145
>ref|NP_147710.1| 30S ribosomal protein S19 [Aeropyrum pernix]
sp|Q9YD22|R19E_AERPE 30S RIBOSOMAL PROTEIN S19E
pir||C72709 probable ribosomal protein S19 APE1090 - Aeropyrum pernix (strain
K1)
dbj|BAA80075.1| (AP000060) 153aa long hypothetical 30S ribosomal protein S19
[Aeropyrum pernix]
Length = 153
Score = 61.2 bits (147), Expect = 2e-09
Identities = 31/67 (46%), Positives = 41/67 (60%)
Frame = -3
Query: 408 FQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQV 229
F+ IYGGRQ GS P HF K+ G+V R ILQ+L++ G++ P GR I+ GR LD
Sbjct: 75 FRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQLEEAGLVVKVPGRGRTISPAGRSLLDTT 134
Query: 228 AGTVPAE 208
A + E
Sbjct: 135 AREIMEE 141
>emb|CAA53231.1| (X75543) ribosomal protein S19 [Ascaris suum]
Length = 148
Score = 58.5 bits (140), Expect = 2e-08
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = -3
Query: 399 IYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKG-GRLITSQGRRDLDQVA 226
+YGG +R G P HF K+SG+V R LQ L+ + + P G GR++T QGR+DLD++A
Sbjct: 79 VYGGSKRRGVVPNHFAKASGSVIRKALQTLEAIKWVQKHPDGNGRVLTKQGRKDLDRIA 137
>sp|P24494|R19G_ASCSU 40S RIBOSOMAL PROTEIN S19G (ELIMINATED PROTEIN NO. 1)
pir||A39106 ribosomal protein S19.e - common roundworm
gb|AAA29369.1| (M59417) eliminated protein No. 1 [Ascaris lumbricoides]
Length = 148
Score = 58.5 bits (140), Expect = 2e-08
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = -3
Query: 399 IYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKG-GRLITSQGRRDLDQVA 226
+YGG +R G P HF K+SG+V R LQ L+ + + P G GR++T QGR+DLD++A
Sbjct: 79 VYGGSKRRGVVPNHFAKASGSVIRKALQTLEAIKWVQKHPDGNGRVLTKQGRKDLDRIA 137
>sp|O27653|R19E_METTH 30S RIBOSOMAL PROTEIN S19E
pir||H69082 ribosomal protein S19 - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB86089.1| (AE000920) ribosomal protein S19 [Methanothermobacter
thermautotrophicus]
Length = 145
Score = 55.1 bits (131), Expect = 2e-07
Identities = 29/68 (42%), Positives = 43/68 (62%)
Frame = -3
Query: 396 YGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVAGTV 217
YGG++ GSRP F + SGA+ R LQ+L++ G+I + + GR+IT +GR LD+ A V
Sbjct: 77 YGGKKDRGSRPEKFRRGSGAIIRRALQQLEESGLIKRE-ENGRVITPEGRSFLDKAAAEV 135
Query: 216 PAEF*SVE 193
E +E
Sbjct: 136 KKEVEGLE 143
>gb|AAK40685.1| (AE006669) SSU ribosomal protein S19E (rps19E) [Sulfolobus
solfataricus]
Length = 158
Score = 54.7 bits (130), Expect = 2e-07
Identities = 26/58 (44%), Positives = 39/58 (66%)
Frame = -3
Query: 399 IYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVA 226
IYGGR+R G+RP F K+ G V+R I Q+L+K G++ GR ++ +GR LD++A
Sbjct: 82 IYGGRKRRGTRPEKFVKAPGHVNRLIFQQLEKAGLVQKIKNKGRSLSPKGRSLLDKLA 139
>ref|NP_143212.1| 30S ribosomal protein S19 [Pyrococcus horikoshii]
sp|O59041|R19E_PYRHO 30S RIBOSOMAL PROTEIN S19E
pir||G71003 probable ribosomal protein S19 - Pyrococcus horikoshii
dbj|BAA30431.1| (AP000006) 150aa long hypothetical 30S ribosomal protein S19
[Pyrococcus horikoshii]
Length = 150
Score = 53.9 bits (128), Expect = 4e-07
Identities = 25/63 (39%), Positives = 38/63 (59%)
Frame = -3
Query: 396 YGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVAGTV 217
YGGR+ G P F K+ G++ R LQ+L+ G I+ P GR++T +GR LD++A +
Sbjct: 77 YGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFIEKVPGKGRVVTPKGRSFLDKIATEL 136
Query: 216 PAE 208
E
Sbjct: 137 KKE 139
>ref|NP_126504.1| SSU ribosomal protein S19E [Pyrococcus abyssi]
pir||F75127 ssu ribosomal protein s19e (rps19e) PAB1813 - Pyrococcus abyssi
(strain Orsay)
emb|CAB49735.1| (AJ248285) SSU ribosomal protein S19E (rps19E) [Pyrococcus abyssi]
Length = 150
Score = 53.9 bits (128), Expect = 4e-07
Identities = 25/63 (39%), Positives = 38/63 (59%)
Frame = -3
Query: 396 YGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVAGTV 217
YGGR+ G P F K+ G++ R LQ+L+ G ++ P GR+IT +GR LD++A +
Sbjct: 77 YGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATEL 136
Query: 216 PAE 208
E
Sbjct: 137 KKE 139
>sp|O15631|RS19_ENTHI 40S RIBOSOMAL PROTEIN S19
dbj|BAA22027.1| (AB002796) ribosomal protein S19 [Entamoeba histolytica]
Length = 148
Score = 48.5 bits (114), Expect = 2e-05
Identities = 24/60 (40%), Positives = 38/60 (63%)
Frame = -3
Query: 405 QKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVA 226
++ YG + P H SG V+R ILQ+L+KMGI+ + GR +T +GR+D+D++A
Sbjct: 77 RRAYGDQYNKHYYPSHRTLGSGKVNRYILQQLEKMGIVG-KIQSGRSLTKEGRKDMDKIA 135
>emb|CAC11198.1| (AL445063) ribosomal protein S19 related protein [Thermoplasma
acidophilum]
Length = 150
Score = 38.1 bits (87), Expect = 0.022
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -3
Query: 396 YGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVA 226
YGG+ GS+ H + S ++ R + EL+K G + PK GR ++ QG LD +
Sbjct: 77 YGGKVDRGSKRYHAAQGSRSIIRYLFHELEKAGYVQKTPK-GRSLSPQGMSLLDNAS 132
>gb|AAG20178.1| (AE005095) 30S ribosomal protein S19E; Rps19e [Halobacterium sp.
NRC-1]
Length = 151
Score = 36.6 bits (83), Expect = 0.065
Identities = 20/58 (34%), Positives = 29/58 (49%)
Frame = -3
Query: 390 GRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVAGTV 217
G R P S + R ILQ+L+ G+++ GR++T GR LD+ AG V
Sbjct: 81 GSNRYVVAPSTTTAGSRNIVRTILQQLEAEGLVEQQHDHGRVVTGDGRSLLDETAGDV 138
>ref|NP_110526.1| 30S ribosomal protein S16A [Thermoplasma volcanium]
dbj|BAB59149.1| (AP000991) ribosomal protein small subunit S19 [Thermoplasma
volcanium]
Length = 150
Score = 34.7 bits (78), Expect = 0.25
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -3
Query: 396 YGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVA 226
YGG+ GS+ H S +++R + EL+ G++ K GR ++ QG LD +
Sbjct: 77 YGGKVDRGSKRYHAASGSRSITRFLFHELESAGLVQKTQK-GRSLSPQGMSLLDNAS 132
>gb|AAD51077.1|AF175724_1 (AF175724) immunoreactive 87kD antigen PG92 [Porphyromonas
gingivalis]
Length = 771
Score = 32.7 bits (73), Expect = 0.94
Identities = 15/44 (34%), Positives = 22/44 (49%)
Frame = -1
Query: 344 AVLFPATSSRSCRRWASLMSTPRVEGSSPPREGVIWTRLPELFL 213
A F A SR+ RW + T VEG +P + + +T L L +
Sbjct: 315 AKAFSAIRSRAIERWEEALGTVEVEGGTPDEKTIFYTALYHLLI 358
>gb|AAH09346.1|AAH09346 (BC009346) Unknown (protein for MGC:16753) [Homo sapiens]
Length = 160
Score = 32.7 bits (73), Expect = 0.94
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +1
Query: 223 SGNLVQITPSLGGDEPSTLGVDINDAHLLQLLEDVAGNSTAALAEVRWA*TVPLTATVDL 402
SG+ VQI+ SL + + V + LQ LED AG++ A AEV V LT+ +DL
Sbjct: 10 SGDSVQISLSLRCQFAAAILVLFHHFQPLQGLEDPAGHTLGASAEVAGHDAVSLTSPIDL 69
>ref|NP_103564.1| probable riboflavin-specific deaminase [Mesorhizobium loti]
dbj|BAB49350.1| (AP002999) probable riboflavin-specific deaminase [Mesorhizobium
loti]
Length = 232
Score = 29.6 bits (65), Expect = 8.0
Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
Frame = +1
Query: 217 NSSGNLVQITPSLGGDEPSTL-GVDINDAHLLQLLEDVAGNSTAALAEVRWA*TVPLTAT 393
++SG L P +GGD L G D+ D+HL +L D + AE + L A
Sbjct: 92 DASGKLHFAKPDVGGDHVVVLLGRDVADSHLAELAADGVSYIVSETAE------IDLAAM 145
Query: 394 VDLL 405
+D+L
Sbjct: 146 LDVL 149
>dbj|BAB02841.1| (AB025634) UTP-glucose glucosyltransferase [Arabidopsis thaliana]
Length = 565
Score = 29.6 bits (65), Expect = 8.0
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 170 KHDCIEGTSTDQNSAGTVPATWSRSRLPWEVMSLP-PLGSTSMMPIFCNSWRMLRETAPL 346
K+D E D + P S SR P+ V LP L + +P+F N R RE +
Sbjct: 232 KYDVSENDYADSEAVLNFP---SLSR-PYPVKCLPHALAANMWLPVFVNQARKFREMKGI 287
Query: 347 LLQKCGGREPFL*RPP*IFWKPPNLPGRPL 436
L+ EP++ + PP P PL
Sbjct: 288 LVNTVAELEPYVLKFLSSSDTPPVYPVGPL 317
>ref|NP_013613.1| Yml096wp [Saccharomyces cerevisiae]
sp|Q04489|YMJ6_YEAST HYPOTHETICAL 59.5 KD PROTEIN IN VPS9-RAD10 INTERGENIC REGION
pir||S49630 probable membrane protein YML096w - yeast (Saccharomyces
cerevisiae)
emb|CAA86641.1| (Z46660) unknown orf, len: 525, CAI: 0.12, some similarity to
asparagine synthetases (32.8% identity in 122 aa
overlap) [Saccharomyces cerevisiae]
Length = 525
Score = 29.6 bits (65), Expect = 8.0
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 176 DCIEGTSTDQNSAGTVPATWSRSRLPWEVMSLPPLGSTSMMPIFCNSWRMLRET 337
DCI G + ++ + + RS LP+EV S L TS+ + N + +LR++
Sbjct: 184 DCIGGVIYEYDTRTKLLNSNQRSHLPYEVTSEIDLNFTSLSEVSKNLYAVLRDS 237
>ref|NP_188816.1| putative UDP-glucose glucosyltransferase [Arabidopsis thaliana]
Length = 495
Score = 29.6 bits (65), Expect = 8.0
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 170 KHDCIEGTSTDQNSAGTVPATWSRSRLPWEVMSLP-PLGSTSMMPIFCNSWRMLRETAPL 346
K+D E D + P S SR P+ V LP L + +P+F N R RE +
Sbjct: 162 KYDVSENDYADSEAVLNFP---SLSR-PYPVKCLPHALAANMWLPVFVNQARKFREMKGI 217
Query: 347 LLQKCGGREPFL*RPP*IFWKPPNLPGRPL 436
L+ EP++ + PP P PL
Sbjct: 218 LVNTVAELEPYVLKFLSSSDTPPVYPVGPL 247
>gb|AAD27529.1| (AF105955) envelope glycoprotein [Human immunodeficiency virus type
1]
Length = 272
Score = 29.6 bits (65), Expect = 8.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 393 GGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKG 274
GG++ N S+P F G + N EL K ++ ++P G
Sbjct: 208 GGKEENKSKPEIFRPGGGNMRDNWRSELYKYKVVKIEPLG 247
>gb|AAD27527.1| (AF105953) envelope glycoprotein [Human immunodeficiency virus type
1]
Length = 272
Score = 29.6 bits (65), Expect = 8.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 393 GGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKG 274
GG++ N S+P F G + N EL K ++ ++P G
Sbjct: 208 GGKEENKSKPEIFRPGGGNMRDNWRSELYKYKVVKIEPLG 247
Database: nr
Posted date: Sep 1, 2001 3:31 AM
Number of letters in database: 238,836,854
Number of sequences in database: 750,817
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,697,541
Number of Sequences: 750817
Number of extensions: 5044915
Number of successful extensions: 11903
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 11383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11892
length of database: 238,836,854
effective HSP length: 107
effective length of database: 158,499,435
effective search space used: 6022978530
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)