Score E
Sequences producing significant alignments: (bits) Value
gb|AAK95256.1|AF410270_1 (AF410270) unknown protein [Arabid... 114 2e-25
pir||T45025 mucin MUC5B, tracheobronchial [imported] - huma... 35 0.11
ref|NP_014536.1| Putative integral membrane protein contain... 35 0.11
gb|AAF22343.1|AF194968_1 (AF194968) proopiomelanocortin [Ac... 35 0.11
ref|NP_014116.1| Putative integral membrane protein contain... 35 0.11
ref|NP_012457.1| Similar to plant PR-1 class of pathogen re... 35 0.11
ref|NP_190096.1| n-acetylglucosaminyl-phosphatidylinositol-... 34 0.32
gb|AAF22342.1|AF194967_1 (AF194967) proopiomelanocortin [Ac... 34 0.32
gb|AAK62657.1| (AY039602) AT3g45100/T14D3_40 [Arabidopsis t... 34 0.32
gb|AAF64523.1| (AF253321) cervical mucin MUC5B [Homo sapiens] 33 0.42
emb|CAA52910.1| (X74955) mucin [Homo sapiens] 33 0.42
sp|Q9YGK2|COLI_THUOB CORTICOTROPIN-LIPOTROPIN PRECURSOR (PR... 33 0.42
gb|AAF60743.1| (AC006797) contains similarity to Pfam famil... 33 0.71
ref|XP_037671.1| similar to IMMUNOGLOBULIN LAMBDA-LIKE POLY... 32 0.93
pir||T34433 hypothetical protein K06A9.1a - Caenorhabditis ... 32 1.6
gb|AAA21168.1| (U13876) Hypothetical protein F57B9.2 [Caeno... 32 1.6
pir||T16865 hypothetical protein T13C5.2 - Caenorhabditis e... 32 1.6
gb|AAK40708.1| (AE006671) Hypothetical protein [Sulfolobus ... 32 1.6
pir||T34434 hypothetical protein K06A9.1a - Caenorhabditis ... 32 1.6
pir||T20374 hypothetical protein D2085.6 - Caenorhabditis e... 31 2.7
pir||T22808 hypothetical protein F56H9.1 - Caenorhabditis e... 30 3.5
sp|Q04617|COLI_ONCMY CORTICOTROPIN-LIPOTROPIN A PRECURSOR (... 30 3.5
gb|AAF28394.1|AF216287_1 (AF216287) Ephrin [Drosophila mela... 30 4.6
pir||T34369 hypothetical protein T19D12.1 - Caenorhabditis ... 30 4.6
gb|AAC24428.2| (U41263) Hypothetical protein T19D12.1 [Caen... 30 4.6
sp|Q9Z7Y1|Y572_CHLPN HYPOTHETICAL PROTEIN CPN0572/CP0177/CP... 30 4.6
pir||T40367 n-acetylglucosaminyl-phosphatidylinositol - fis... 30 4.6
pir||T46726 secreted acid phosphatase 2 precursor [imported... 30 4.6
pir||KISMG galactokinase (EC 2.7.1.6) - Streptomyces sp >gi... 30 4.6
dbj|BAA94218.1| (AP001633) hypothetical protein [Oryza sativa] 30 4.6
sp|O13692|YDYD_SCHPO HYPOTHETICAL 53.7 KD PROTEIN C11E3.13C... 30 4.6
ref|NP_195748.1| putative protein [Arabidopsis thaliana] >g... 30 4.6
sp|P22832|AMYG_ASPSH GLUCOAMYLASE PRECURSOR (GLUCAN 1,4-ALP... 30 6.0
prf||1508161A glucoamylase I [Aspergillus niger var. awamorii] 30 6.0
sp|P23176|AMYG_ASPAK GLUCOAMYLASE I PRECURSOR (GLUCAN 1,4-A... 30 6.0
pir||T40167 hypothetical protein SPBC30B4.01c - fission yea... 30 6.0
pir||T40374 hypothetical protein SPBC3D6.14c - fission yeas... 30 6.0
ref|NP_010247.1| Ydl037cp [Saccharomyces cerevisiae] >gi|21... 29 7.8
pir||C75280 phenylacetic acid degradation protein PaaA - De... 29 7.8
gb|AAF56618.1| (AE003757) CG6420 gene product [Drosophila m... 29 7.8
gb|AAD20945.1| (AF113002) silencing mediator of retinoic ac... 29 7.8
sp|Q9WU42|NCR2_MOUSE NUCLEAR RECEPTOR CO-REPRESSOR 2 (N-COR... 29 7.8
gb|AAF75680.1|AF247670_1 (AF247670) opacity factor Sof prec... 29 7.8
gb|AAA97877.1| (U43599) microfilarial sheath protein SHP3 p... 29 7.8
emb|CAA22836.1| (AL035245) /prediction=(method:''genefinder... 29 7.8
pir||T16509 hypothetical protein F59A6.3 - Caenorhabditis e... 29 7.8
pir||I53641 mucin 5AC - human (fragment) >gi|945219|gb|AAC4... 29 7.8
pir||T21790 hypothetical protein F35E8.7 - Caenorhabditis e... 29 7.8
pir||S53363 mucin 5AC (clone JER58) - human (fragment) >gi|... 29 7.8
gb|AAF52717.1| (AE003622) CG9487 gene product [Drosophila m... 29 7.8
gb|AAD20944.1| (AF113001) silencing mediator of retinoic ac... 29 7.8
>gb|AAK95256.1|AF410270_1 (AF410270) unknown protein [Arabidopsis thaliana]
Length = 146
Score = 114 bits (285), Expect = 2e-25
Identities = 50/78 (64%), Positives = 62/78 (79%)
Frame = +2
Query: 20 VINYQAFTNSEGIYSVAETMPESDRWDSCLARPISSFHHHCTRRGDAHSGVKFTYNKQSG 199
V+NYQAFTNS+G+Y+VAETMPES+RWD+CLARPISSFH C R ++G+KFTYN+ SG
Sbjct: 68 VVNYQAFTNSKGVYTVAETMPESERWDACLARPISSFHTPCNRLHQTNTGIKFTYNRPSG 127
Query: 200 NSHNVKAFLYKPANVPLY 253
H VK F+Y+P P Y
Sbjct: 128 FFHAVKPFVYRPQYAPSY 145
>pir||T45025 mucin MUC5B, tracheobronchial [imported] - human (fragment)
emb|CAA96577.1| (Z72496) mucin MUC5B [Homo sapiens]
Length = 3570
Score = 35.4 bits (80), Expect = 0.11
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = +3
Query: 21 SSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSA-ASTTIAPGGAMH--TLGSSSHTTN 191
SST S TP + +L AT T A G +A AS+T A G H T ++ T+
Sbjct: 568 SSTATPSSTPGTTWILTKPTTTAT--TTASTGSTATASSTQATAGTPHVSTTATTPTVTS 625
Query: 192 SQGTRTTSRHSCTSLPMFRCT 254
S+ T +S + T+LP R T
Sbjct: 626 SKATPFSSPGTATALPALRST 646
Score = 34.7 bits (78), Expect = 0.19
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +3
Query: 21 SSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMH--TLGSSSHTTNS 194
SST S TP + +L AT + +ST P G H T ++ T+S
Sbjct: 2323 SSTATPSSTPGTTWILTKLTTTATTTESTGSTATPSSTQGPPAGTPHVSTTATTPTVTSS 2382
Query: 195 QGTRTTSRHSCTSLPMFRCT 254
+ T +S + T+LP R T
Sbjct: 2383 KATPFSSPGTATALPALRST 2402
Score = 33.5 bits (75), Expect = 0.42
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 21 SSTTRHSQTPRASTVLXXXXXXATD--GTRAWRGPSAASTTIAPGGAMHTLGSSSHTTNS 194
SST S TP + +L AT T + PS+ T P + + ++ T+S
Sbjct: 2852 SSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPPPKVLTSPATTPTATSS 2911
Query: 195 QGTRTTSRHSCTSLPMFRCT 254
+ T ++S + T+LP+ T
Sbjct: 2912 KATSSSSPRTATTLPVLTST 2931
Score = 33.1 bits (74), Expect = 0.54
Identities = 24/78 (30%), Positives = 38/78 (47%), Gaps = 4/78 (5%)
Frame = +3
Query: 21 SSTTRHSQTPRASTVLXXXXXXATDGTRAWRG----PSAASTTIAPGGAMHTLGSSSHTT 188
SST S TP + +L AT T A G PS+ T P + + ++ T
Sbjct: 1625 SSTATPSSTPGTTWILTEQTTAAT--TTATTGSTAIPSSTPGTAPPPKVLTSQATTPTAT 1682
Query: 189 NSQGTRTTSRHSCTSLPMFRCT 254
+S+ T ++S + T+LP+ T
Sbjct: 1683 SSKATSSSSPRTATTLPVLTST 1704
>ref|NP_014536.1| Putative integral membrane protein containing novel cysteine motif.
Similarity to SLG1 (WSC1), WSC2 and WSC4; Wsc3p
[Saccharomyces cerevisiae]
pir||S51892 probable membrane protein YOL105c - yeast (Saccharomyces
cerevisiae)
emb|CAA88155.1| (Z48149) similarity with H. polymorpha hypothetical protein in LEU2
region [Saccharomyces cerevisiae]
emb|CAA99123.1| (Z74847) ORF YOL105c [Saccharomyces cerevisiae]
Length = 556
Score = 35.4 bits (80), Expect = 0.11
Identities = 20/75 (26%), Positives = 39/75 (51%)
Frame = +3
Query: 9 AAEVSSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHTT 188
+A++SSTTR + T S+ + T T + + +STT + + + +SS T+
Sbjct: 162 SAQISSTTRRTSTDMKSSEMIATTVSTTSTTSSSTSSTTSSTTSSTTSSTTSSTTSSSTS 221
Query: 189 NSQGTRTTSRHSCTS 233
++ + T+S S T+
Sbjct: 222 STTSSTTSSTTSSTT 236
>gb|AAF22343.1|AF194968_1 (AF194968) proopiomelanocortin [Acanthopagrus cuvieri]
Length = 223
Score = 35.4 bits (80), Expect = 0.11
Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Frame = +1
Query: 4 WSRPRCHQLPGIHKLRGHLQCCGDD-AGERPMGLVPGEAHQQLPPPL 141
W P C +L + +Q C D E P+ +PG AH Q PPPL
Sbjct: 24 WEHPSCQELNSRDSVMECIQLCHSDLTAETPV--IPGSAHLQPPPPL 68
>ref|NP_014116.1| Putative integral membrane protein containing novel cysteine motif.
Similarity to SLG1 (WSC1), WSC3 and WSC4; Wsc2p
[Saccharomyces cerevisiae]
sp|P53832|YN23_YEAST HYPOTHETICAL 52.3 KD PROTEIN IN MRPL10-ERG24 INTERGENIC REGION
PRECURSOR
pir||S63257 probable membrane protein YNL283c - yeast (Saccharomyces
cerevisiae)
emb|CAA96195.1| (Z71559) ORF YNL283c [Saccharomyces cerevisiae]
Length = 503
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +3
Query: 12 AEVSSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHTTN 191
A +STT S T +S + + A S++STT + T SSS +++
Sbjct: 130 ATSTSTTSSSSTSVSSKTSTKLDTKTSTSSSATHSSSSSSTTSTTTSSSETTTSSSSSSS 189
Query: 192 SQGTRTTSRHSCTS 233
S T TTS S TS
Sbjct: 190 SSSTSTTSTTSTTS 203
>ref|NP_012457.1| Similar to plant PR-1 class of pathogen related proteins; Pry3p
[Saccharomyces cerevisiae]
sp|P47033|YJH8_YEAST HYPOTHETICAL 89.2 KD PROTEIN IN SCP160-SMC3 INTERGENIC REGION
pir||S56032 probable membrane protein YJL078c - yeast (Saccharomyces cerevisiae)
emb|CAA61314.1| (X88851) hypothetical protein [Saccharomyces cerevisiae]
emb|CAA58492.1| (X83502) J1027 [Saccharomyces cerevisiae]
emb|CAA89370.1| (Z49353) ORF YJL078c [Saccharomyces cerevisiae]
Length = 881
Score = 35.4 bits (80), Expect = 0.11
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +3
Query: 21 SSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAP-GGAMHTLGSSSHTTNSQ 197
S+TT + QT L + G R G + STT G AMH SS +T +
Sbjct: 784 STTTTYQQTV---ATLYAKPSSTSLGARTTTGSNGRSTTSQQDGSAMHQPTSSIYTQLKE 840
Query: 198 GTRTTSRHS-----CTSLPMFRCTCPGG 266
GT TT++ S T L +F+C G
Sbjct: 841 GTSTTAKLSAYEGAATPLSIFQCNSLAG 868
>ref|NP_190096.1| n-acetylglucosaminyl-phosphatidylinositol-like protein [Arabidopsis
thaliana]
pir||T47450 n-acetylglucosaminyl-phosphatidylinositol-like protein -
Arabidopsis thaliana
emb|CAB72148.1| (AL138649) n-acetylglucosaminyl-phosphatidylinositol-like protein
[Arabidopsis thaliana]
Length = 450
Score = 33.9 bits (76), Expect = 0.32
Identities = 15/47 (31%), Positives = 25/47 (52%)
Frame = -3
Query: 187 VVCELDPRVCIAPPGAMVVEAADGPRQARVPSVALRHRLRNTVDALG 47
++ E+ P VC P V DGP+ R+ + +H L++ V+ LG
Sbjct: 217 LLVEVIPEVCRLYPNVRFVVGGDGPKHVRLEEMREKHSLQDRVEMLG 263
>gb|AAF22342.1|AF194967_1 (AF194967) proopiomelanocortin [Acanthopagrus latus]
Length = 232
Score = 33.9 bits (76), Expect = 0.32
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 4 WSRPRCHQLPGIHKLRGHLQCCGDD-AGERPMGLVPGEAHQQLPPP 138
W P C +L + +Q C D E P+ +PG AH Q PPP
Sbjct: 24 WEHPSCQELNSESSVMECIQLCHSDLTAETPV--IPGNAHLQPPPP 67
>gb|AAK62657.1| (AY039602) AT3g45100/T14D3_40 [Arabidopsis thaliana]
Length = 447
Score = 33.9 bits (76), Expect = 0.32
Identities = 15/47 (31%), Positives = 25/47 (52%)
Frame = -3
Query: 187 VVCELDPRVCIAPPGAMVVEAADGPRQARVPSVALRHRLRNTVDALG 47
++ E+ P VC P V DGP+ R+ + +H L++ V+ LG
Sbjct: 217 LLVEVIPEVCRLYPNVRFVVGGDGPKHVRLEEMREKHSLQDRVEMLG 263
>gb|AAF64523.1| (AF253321) cervical mucin MUC5B [Homo sapiens]
Length = 716
Score = 33.5 bits (75), Expect = 0.42
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 21 SSTTRHSQTPRASTVLXXXXXXATD--GTRAWRGPSAASTTIAPGGAMHTLGSSSHTTNS 194
SST S TP + +L AT T + PS+ T P + + ++ T+S
Sbjct: 326 SSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPPPKVLTSPATTPTATSS 385
Query: 195 QGTRTTSRHSCTSLPMFRCT 254
+ T ++S + T+LP+ T
Sbjct: 386 KATSSSSPRTATTLPVLTST 405
>emb|CAA52910.1| (X74955) mucin [Homo sapiens]
Length = 622
Score = 33.5 bits (75), Expect = 0.42
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 21 SSTTRHSQTPRASTVLXXXXXXATD--GTRAWRGPSAASTTIAPGGAMHTLGSSSHTTNS 194
SST S TP + +L AT T + PS+ T P + + ++ T+S
Sbjct: 66 SSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPPPKVLTSPATTPTATSS 125
Query: 195 QGTRTTSRHSCTSLPMFRCT 254
+ T ++S + T+LP+ T
Sbjct: 126 KATSSSSPRTATTLPVLTTT 145
>sp|Q9YGK2|COLI_THUOB CORTICOTROPIN-LIPOTROPIN PRECURSOR (PRO-OPIOMELANOCORTIN) (POMC)
[CONTAINS: CORTICOTROPIN (ADRENOCORTICOTROPIC HORMONE)
(ACTH); MELANOTROPIN ALPHA (ALPHA-MSH);
CORTICOTROPIN-LIKE INTERMEDIARY PEPTIDE (CLIP);
LIPOTROPIN BETA (BETA-LPH); LIPOTROPIN GAMMA>
dbj|BAA35125.1| (AB020971) proopiomelanocortin [Thunnus obesus]
Length = 222
Score = 33.5 bits (75), Expect = 0.42
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 4 WSRPRCHQLPGIHKLRGHLQCCGDD-AGERPMGLVPGEAHQQLPPPL 141
W P C +L + +Q C D E+P+ +PG AH Q PPPL
Sbjct: 24 WEHPSCQELNSDSSMMECIQLCHSDLTAEKPV--IPGNAHLQ-PPPL 67
>gb|AAF60743.1| (AC006797) contains similarity to Pfam family PF00078 (Reverse
transcriptase (RNA-dependent)), score=79.6, E=6.3e-20,
E=1 [Caenorhabditis elegans]
Length = 1079
Score = 32.7 bits (73), Expect = 0.71
Identities = 25/81 (30%), Positives = 34/81 (41%)
Frame = +3
Query: 18 VSSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHTTNSQ 197
+SST S TP T +T+ + P +TT AP T SS TT Q
Sbjct: 62 LSSTPTSSSTPIKETTTTAPETTSTEPPSSSTTPVQTTTTTAP-ETTSTEAPSSSTTPVQ 120
Query: 198 GTRTTSRHSCTSLPMFRCTCP 260
T TT+ + ++ P T P
Sbjct: 121 TTTTTAPETTSTEPPSSSTSP 141
>ref|XP_037671.1| similar to IMMUNOGLOBULIN LAMBDA-LIKE POLYPEPTIDE 1 PRECURSOR
(IMMUNOGLOBULIN-RELATED 14.1 PROTEIN) (IMMUNOGLOBULIN
OMEGA POLYPEPTIDE) (H. sapiens) [Homo sapiens]
Length = 175
Score = 32.3 bits (72), Expect = 0.93
Identities = 18/52 (34%), Positives = 23/52 (43%)
Frame = +1
Query: 4 WSRPRCHQLPGIHKLRGHLQCCGDDAGERPMGLVPGEAHQQLPPPLHQEGRC 159
W R +C + PG + R Q D G+ G P EAH + PP L C
Sbjct: 15 WPRGKCRKTPGWEEARPKAQDLRGDLGKTQAG--PAEAHTRGPPRLPAATGC 64
>pir||T34433 hypothetical protein K06A9.1a - Caenorhabditis elegans
gb|AAC70889.1| (U80846) K06A9.1a gene product [Caenorhabditis elegans]
Length = 1032
Score = 31.6 bits (70), Expect = 1.6
Identities = 19/62 (30%), Positives = 28/62 (44%)
Frame = +3
Query: 3 VVAAEVSSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSH 182
V A VSS+T S TP AS+ G+ + G S S + + G T+ S+
Sbjct: 421 VTVAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGSTG 480
Query: 183 TT 188
+T
Sbjct: 481 ST 482
>gb|AAA21168.1| (U13876) Hypothetical protein F57B9.2 [Caenorhabditis elegans]
Length = 2500
Score = 31.6 bits (70), Expect = 1.6
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +1
Query: 70 GDDAGERPMGLVPGEAHQQLPPPLHQEGR--------CTLWGQVHIQQTVRELAQRQGIP 225
G +G P G+VP + Q PP L Q+ T Q+H+QQ+V QR P
Sbjct: 683 GGGSGLPPSGVVPVQQQPQQPPSLQQQHSQQSLPTPPTTSQQQIHVQQSVPGPIQR---P 739
Query: 226 VQACQCSAVPARAAAR 273
Q P +A A+
Sbjct: 740 AQFAPQPMFPPQAQAQ 755
>pir||T16865 hypothetical protein T13C5.2 - Caenorhabditis elegans
gb|AAK39288.1| (U39648) Hypothetical protein T13C5.2 [Caenorhabditis elegans]
Length = 572
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 114 GPSAASTTIAPGGAMHTLGSSSHTTNSQGTRTTSRHSCTSLPMFRC-TCP 260
G S++ TT PG A T S+ TT + T + + + P F C CP
Sbjct: 147 GASSSQTTTLPGSATTTTAGSTTTTTTTTTTVATTTTTVTEPPFPCNACP 196
>gb|AAK40708.1| (AE006671) Hypothetical protein [Sulfolobus solfataricus]
Length = 496
Score = 31.6 bits (70), Expect = 1.6
Identities = 23/77 (29%), Positives = 36/77 (45%)
Frame = +3
Query: 3 VVAAEVSSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSH 182
V+ A SSTT + T +T +T T S+++T+ + T SSS
Sbjct: 384 VIPAITSSTTTTTTTSSTTTTSTTTSTTSTTST------SSSTTSTTTSSSSTTTTSSSI 437
Query: 183 TTNSQGTRTTSRHSCTS 233
T++S + TTS S T+
Sbjct: 438 TSSSTTSSTTSSTSTTT 454
>pir||T34434 hypothetical protein K06A9.1a - Caenorhabditis elegans
gb|AAC70890.1| (U80846) K06A9.1a gene product [Caenorhabditis elegans]
Length = 2232
Score = 31.6 bits (70), Expect = 1.6
Identities = 19/62 (30%), Positives = 28/62 (44%)
Frame = +3
Query: 3 VVAAEVSSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSH 182
V A VSS+T S TP AS+ G+ + G S S + + G T+ S+
Sbjct: 421 VTVAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGSTG 480
Query: 183 TT 188
+T
Sbjct: 481 ST 482
Score = 30.4 bits (67), Expect = 3.5
Identities = 24/62 (38%), Positives = 31/62 (49%), Gaps = 2/62 (3%)
Frame = +3
Query: 18 VSSTTRH--SQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHTTN 191
VSST S T +ST T G+ + +AASTT G + TLGSSS ++N
Sbjct: 1752 VSSTASPAASSTAPSSTGTMSSTSSGTVGSTMSQSSTAASTTSHTGSTV-TLGSSSTSSN 1810
Query: 192 SQGT 203
T
Sbjct: 1811 QMST 1814
>pir||T20374 hypothetical protein D2085.6 - Caenorhabditis elegans
emb|CAA91062.1| (Z54284) contains similarity to Pfam domain: PF00534 (Glycosyl
transferases group 1), Score=91.6, E-value=9.5e-25,
N=1~cDNA EST yk349e7.5 comes from this gene
[Caenorhabditis elegans]
Length = 444
Score = 30.8 bits (68), Expect = 2.7
Identities = 13/48 (27%), Positives = 24/48 (49%)
Frame = -3
Query: 187 VVCELDPRVCIAPPGAMVVEAADGPRQARVPSVALRHRLRNTVDALGV 44
++CE+ P+VC + DGP++ + + R +L V LG+
Sbjct: 219 LLCEIVPKVCARHKSVRFIIGGDGPKRIELEEMLERFKLHERVVILGM 266
>pir||T22808 hypothetical protein F56H9.1 - Caenorhabditis elegans
emb|CAA98949.1| (Z74473) predicted using Genefinder [Caenorhabditis elegans]
Length = 770
Score = 30.4 bits (67), Expect = 3.5
Identities = 19/41 (46%), Positives = 23/41 (55%)
Frame = +3
Query: 111 RGPSAASTTIAPGGAMHTLGSSSHTTNSQGTRTTSRHSCTS 233
RGP+ ASTT+ P T SSS TT+S T T + TS
Sbjct: 9 RGPAVASTTVVP----ITTTSSSSTTSSTTTTTVPVSTTTS 45
>sp|Q04617|COLI_ONCMY CORTICOTROPIN-LIPOTROPIN A PRECURSOR (PRO-OPIOMELANOCORTIN) (POMC)
pir||A45359 proopiomelanocortin A - rainbow trout
emb|CAA49466.1| (X69808) proopiomelanocortine A [Oncorhynchus mykiss]
Length = 253
Score = 30.4 bits (67), Expect = 3.5
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 4 WSRPRCHQLPGIHKLRGHLQCCGDDAGERPMGLVPGEAHQQLPPP 138
W PRCH L + L +Q C D + + P + H Q P P
Sbjct: 24 WENPRCHDLSSENNLLECIQLCRSDLTTK-SPIFPVKVHLQPPSP 67
>gb|AAF28394.1|AF216287_1 (AF216287) Ephrin [Drosophila melanogaster]
gb|AAF59334.2| (AE003843) Ephrin gene product [alt 1] [Drosophila melanogaster]
gb|AAF59335.2| (AE003843) Ephrin gene product [alt 2] [Drosophila melanogaster]
Length = 652
Score = 30.0 bits (66), Expect = 4.6
Identities = 22/67 (32%), Positives = 33/67 (48%), Gaps = 8/67 (11%)
Frame = +2
Query: 62 SVAETMPESDRWDSCLARPISSFHHHCTRRG---DAHSGVKFTYNK-----QSGNSHNVK 217
+V+ T +S DSC R + + T D+H V F K Q H V+
Sbjct: 11 TVSWTQSKSQIHDSCQRRSMLACKRRLTTSKVLEDSHPPVAFPNCKSHRHQQQKEKHKVQ 70
Query: 218 AFLYKPANVPLYLPG 262
+ KP ++ LY+PG
Sbjct: 71 LYSGKPLSIKLYVPG 85
>pir||T34369 hypothetical protein T19D12.1 - Caenorhabditis elegans
Length = 1777
Score = 30.0 bits (66), Expect = 4.6
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 9 AAEVSSTTRHSQTPR-ASTVLXXXXXXATDG----TRAWRGPSAASTTIAPGGAMHTLGS 173
++ ST + TP +T+L +T G +++ S +TTI PG TLGS
Sbjct: 373 SSSAPSTYTSNFTPSPTTTLLTSTIAPSTQGVPTSSKSSSPNSTPTTTITPGAPSSTLGS 432
Query: 174 SSHTTNSQGTRTTSRHSCTSLPMFRCTCP 260
SS T S T T S ++L + + P
Sbjct: 433 SSSTIVST-TITPSTPKVSTLTLSQSPTP 460
>gb|AAC24428.2| (U41263) Hypothetical protein T19D12.1 [Caenorhabditis elegans]
Length = 1844
Score = 30.0 bits (66), Expect = 4.6
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 9 AAEVSSTTRHSQTPR-ASTVLXXXXXXATDG----TRAWRGPSAASTTIAPGGAMHTLGS 173
++ ST + TP +T+L +T G +++ S +TTI PG TLGS
Sbjct: 373 SSSAPSTYTSNFTPSPTTTLLTSTIAPSTQGVPTSSKSSSPNSTPTTTITPGAPSSTLGS 432
Query: 174 SSHTTNSQGTRTTSRHSCTSLPMFRCTCP 260
SS T S T T S ++L + + P
Sbjct: 433 SSSTIVST-TITPSTPKVSTLTLSQSPTP 460
>sp|Q9Z7Y1|Y572_CHLPN HYPOTHETICAL PROTEIN CPN0572/CP0177/CPJ0572
pir||B72061 hypothetical protein CP0177 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39)
gb|AAD18712.1| (AE001642) CT456 hypothetical protein [Chlamydophila pneumoniae
CWL029]
gb|AAF38051.1| (AE002178) hypothetical protein [Chlamydophila pneumoniae AR39]
dbj|BAA98778.1| (AP002547) CT456 hypothetical protein [Chlamydophila pneumoniae
J138]
Length = 755
Score = 30.0 bits (66), Expect = 4.6
Identities = 25/85 (29%), Positives = 36/85 (41%), Gaps = 6/85 (7%)
Frame = +3
Query: 12 AEVSSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHT------LGS 173
A VSS++ Q A+T+ +T T G + STT G +G+
Sbjct: 582 ANVSSSSVLPQPQVATTITPQARTASTSTTSIGTGTESTSTTSTGTGTGSVSTQSTGVGT 641
Query: 174 SSHTTNSQGTRTTSRHSCTSLPMFRCTCPGG 266
+ TT S GT T+ S S + P G
Sbjct: 642 PTTTTRSTGTSATTTTSSASTQTPQAPLPSG 672
>pir||T40367 n-acetylglucosaminyl-phosphatidylinositol - fission yeast
(Schizosaccharomyces pombe)
emb|CAB09127.1| (Z95620) n-acetylglucosaminyl-phosphatidylinositol
[Schizosaccharomyces pombe]
Length = 456
Score = 30.0 bits (66), Expect = 4.6
Identities = 13/41 (31%), Positives = 22/41 (52%)
Frame = -3
Query: 169 PRVCIAPPGAMVVEAADGPRQARVPSVALRHRLRNTVDALG 47
PR+C P V A DGP+ + + ++ L++ V+ LG
Sbjct: 213 PRICAQHPKVRFVIAGDGPKSIDLEQMREKYMLQDRVEMLG 253
>pir||T46726 secreted acid phosphatase 2 precursor [imported] - Leishmania
mexicana
emb|CAA87091.1| (Z46970) secreted acid phosphatase 2 (SAP2) [Leishmania mexicana]
Length = 888
Score = 30.0 bits (66), Expect = 4.6
Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 5/71 (7%)
Frame = +3
Query: 21 SSTTRHSQTPRASTVLXXXXXXATDGTR-----AWRGPSAASTTIAPGGAMHTLGSSSHT 185
S T S A+T +++GT A S +TT + T S + T
Sbjct: 597 SDATTSSSEGTATTSSDATTSSSSEGTTSSSSDATTSSSDVTTTSSSSEGTATSSSDATT 656
Query: 186 TNSQGTRTTSRHSCTS 233
++S+GT TTS + TS
Sbjct: 657 SSSEGTATTSSDATTS 672
>pir||KISMG galactokinase (EC 2.7.1.6) - Streptomyces sp
gb|AAA26748.1| (M18953) galactokinase (EC 2.7.1.6) [Streptomyces lividans]
Length = 395
Score = 30.0 bits (66), Expect = 4.6
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 149 SWCNGGGSC*WASPGTSPIGRSPASS-PQHCRCPRSL*MPGS 27
S C G+ ++P TSP GRSP++S P+ C C S PGS
Sbjct: 177 SACCEAGTPSSSTPATSPSGRSPSTSPPRGCACWSS--TPGS 216
>dbj|BAA94218.1| (AP001633) hypothetical protein [Oryza sativa]
Length = 436
Score = 30.0 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 13/28 (46%)
Frame = -2
Query: 146 WCNGGGSC*WASPGTSPIG-------------RSPASSPQH 63
WCNG SP SP+G SPASSP+H
Sbjct: 320 WCNGNSGVSQTSPTPSPVGLGGESEAAGCRRFPSPASSPRH 360
>sp|O13692|YDYD_SCHPO HYPOTHETICAL 53.7 KD PROTEIN C11E3.13C IN CHROMOSOME I PRECURSOR
pir||T37541 probable glycolipid anchored surface protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11192.1| (Z98595) probable glycolipid anchored surface protein
[Schizosaccharomyces pombe]
Length = 510
Score = 30.0 bits (66), Expect = 4.6
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 3 VVAAEVS-STTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAAST--TIAPGGAMHTLGS 173
+V A +S S+T S + +S + G+ G S+ ST T A G + H+ GS
Sbjct: 417 IVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAHSSGS 476
Query: 174 SSHTTNSQGTRTT 212
SS ++++ + +T
Sbjct: 477 SSGSSSATSSAST 489
>ref|NP_195748.1| putative protein [Arabidopsis thaliana]
pir||T45968 hypothetical protein F7J8.260 - Arabidopsis thaliana
emb|CAB69856.1| (AL137189) putative protein [Arabidopsis thaliana]
Length = 460
Score = 30.0 bits (66), Expect = 4.6
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Frame = +3
Query: 27 TTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAAS------TTIAPGGAMHTLGSSSHTT 188
+T S+ +T T TR+W PS++S T+ A S+ T
Sbjct: 112 STPTSRATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAARATRPTTSTDQQT 171
Query: 189 NSQGTRTTSRHSCTSLPMFRCTCPGGRS 272
T T S + S P + PG RS
Sbjct: 172 TGSATSTRSNNRPMSAPNSK---PGSRS 196
>sp|P22832|AMYG_ASPSH GLUCOAMYLASE PRECURSOR (GLUCAN 1,4-ALPHA-GLUCOSIDASE)
(1,4-ALPHA-D-GLUCAN GLUCOHYDROLASE)
pir||JQ0607 glucan 1,4-alpha-glucosidase (EC 3.2.1.3) precursor - Aspergillus
sp
dbj|BAA01254.1| (D10460) glucoamylase [Aspergillus shirousami]
Length = 639
Score = 29.6 bits (65), Expect = 6.0
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 24 STTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHTTNSQGT 203
+ T S T + TV AT GT + +TT GG T S + TT S+ +
Sbjct: 473 AATSASGTYSSVTVTSWPSIVATGGT------TTTATTTGSGGVTST--SKTTTTASKTS 524
Query: 204 RTTSRHSCTS 233
TTS SCT+
Sbjct: 525 TTTSSTSCTT 534
>prf||1508161A glucoamylase I [Aspergillus niger var. awamorii]
Length = 640
Score = 29.6 bits (65), Expect = 6.0
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 24 STTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHTTNSQGT 203
+ T S T + TV AT GT + +TT GG T S + TT S+ +
Sbjct: 474 AATSASGTYSSVTVTSWPSIVATGGT------TTTATTTGSGGVTST--SKTTTTASKTS 525
Query: 204 RTTSRHSCTS 233
TTS SCT+
Sbjct: 526 TTTSSTSCTT 535
>sp|P23176|AMYG_ASPAK GLUCOAMYLASE I PRECURSOR (GLUCAN 1,4-ALPHA-GLUCOSIDASE)
(1,4-ALPHA-D-GLUCAN GLUCOHYDROLASE)
pir||JT0479 glucan 1,4-alpha-glucosidase (EC 3.2.1.3) precursor - Aspergillus
awamori
dbj|BAA00331.1| (D00427) glucoamylase I precursor [Aspergillus kawachii]
Length = 639
Score = 29.6 bits (65), Expect = 6.0
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 24 STTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHTTNSQGT 203
+ T S T + TV AT GT + +TT GG T S + TT S+ +
Sbjct: 473 AATSASGTYSSVTVTSWPSIVATGGT------TTTATTTGSGGVTST--SKTTTTASKTS 524
Query: 204 RTTSRHSCTS 233
TTS SCT+
Sbjct: 525 TTTSSTSCTT 534
>pir||T40167 hypothetical protein SPBC30B4.01c - fission yeast
(Schizosaccharomyces pombe) (fragment)
emb|CAA20314.1| (AL031262) putative glucoamylase [Schizosaccharomyces pombe]
Length = 344
Score = 29.6 bits (65), Expect = 6.0
Identities = 16/83 (19%), Positives = 43/83 (51%)
Frame = +3
Query: 6 VAAEVSSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHT 185
V++ SS++ S + ++T ++ + + S++S++ + + + SSS +
Sbjct: 102 VSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 161
Query: 186 TNSQGTRTTSRHSCTSLPMFRCT 254
++S + ++S S +S+P+ T
Sbjct: 162 SSSSSSSSSSSSSSSSVPITSST 184
>pir||T40374 hypothetical protein SPBC3D6.14c - fission yeast
(Schizosaccharomyces pombe) (fragment)
emb|CAB09116.1| (Z95620) hypothetical protein [Schizosaccharomyces pombe]
Length = 309
Score = 29.6 bits (65), Expect = 6.0
Identities = 16/83 (19%), Positives = 43/83 (51%)
Frame = +3
Query: 6 VAAEVSSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHT 185
V++ SS++ S + ++T ++ + + S++S++ + + + SSS +
Sbjct: 67 VSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 126
Query: 186 TNSQGTRTTSRHSCTSLPMFRCT 254
++S + ++S S +S+P+ T
Sbjct: 127 SSSSSSSSSSSSSSSSVPITSST 149
>ref|NP_010247.1| Ydl037cp [Saccharomyces cerevisiae]
pir||S67570 hypothetical protein YDL037c - yeast (Saccharomyces cerevisiae)
emb|CAA96452.1| (Z71781) unknown [Saccharomyces cerevisiae]
emb|CAA98596.1| (Z74085) ORF YDL037c [Saccharomyces cerevisiae]
Length = 328
Score = 29.3 bits (64), Expect = 7.8
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +3
Query: 21 SSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHTTNSQG 200
SSTT S T +ST +T + +++STT + + T SS+ ++++
Sbjct: 183 SSTTTSSSTTSSSTTSSSTTSSSTTSSST----TSSSTTSSSTTSSSTTSSSTTSSSTTS 238
Query: 201 TRTTSRHSCTS 233
+ TTS + TS
Sbjct: 239 SSTTSSSTKTS 249
>pir||C75280 phenylacetic acid degradation protein PaaA - Deinococcus
radiodurans (strain R1)
gb|AAF11931.1|AE002069_5 (AE002069) phenylacetic acid degradation protein PaaA [Deinococcus
radiodurans]
Length = 325
Score = 29.3 bits (64), Expect = 7.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1
Query: 189 LLYVNLTPE---CASPLLVQWWWKLLMGLARHESHRSLSGIVS 70
+LY TPE A L +WWW + L H+S +G +S
Sbjct: 183 VLYAQGTPEQRQMAQDALNRWWWPAVQMLGPHDSDSPNTGALS 225
>gb|AAF56618.1| (AE003757) CG6420 gene product [Drosophila melanogaster]
Length = 908
Score = 29.3 bits (64), Expect = 7.8
Identities = 14/32 (43%), Positives = 18/32 (55%)
Frame = +3
Query: 114 GPSAASTTIAPGGAMHTLGSSSHTTNSQGTRT 209
G + AST I+ GGA S+H +NS G T
Sbjct: 97 GAAGASTAISNGGAGGDYSHSNHNSNSAGNNT 128
>gb|AAD20945.1| (AF113002) silencing mediator of retinoic acid and thyroid hormone
receptor beta [Mus musculus]
Length = 2253
Score = 29.3 bits (64), Expect = 7.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -2
Query: 104 TSPIGRSPASSPQHCRCPRSL*MPGS 27
T P GR PASSP PRSL P S
Sbjct: 1700 TKPPGREPASSPSKSSEPRSLAPPSS 1725
>sp|Q9WU42|NCR2_MOUSE NUCLEAR RECEPTOR CO-REPRESSOR 2 (N-COR2) (SILENCING MEDIATOR OF
RETINOIC ACID AND THYROID HORMONE RECEPTOR) (SMRT)
(SMRTE) (THYROID-, RETINOIC-ACID-RECEPTOR-ASSOCIATED
CO-REPRESSOR) (T3 RECEPTOR-ASSOCIATING FACTOR) (TRAC)
Length = 2472
Score = 29.3 bits (64), Expect = 7.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -2
Query: 104 TSPIGRSPASSPQHCRCPRSL*MPGS 27
T P GR PASSP PRSL P S
Sbjct: 1919 TKPPGREPASSPSKSSEPRSLAPPSS 1944
>gb|AAF75680.1|AF247670_1 (AF247670) opacity factor Sof precursor [Streptococcus pyogenes]
Length = 209
Score = 29.3 bits (64), Expect = 7.8
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Frame = +3
Query: 3 VVAAEVSSTTRHSQTPRASTVLXXXXXXA-------TDGTR---AWRGPSAASTTIAPGG 152
V+ EVS++T ++T AST + T GT A G + A+TT GG
Sbjct: 5 VLGQEVSASTASTETSAASTETSAASTASAGTGTATTSGTATSGASSGTTVATTTTTNGG 64
Query: 153 AMHTLGSSSHTTNSQGTRTTSRHSCTS 233
+S T +Q + S +S
Sbjct: 65 PQSATVTSEATPKAQAQTAVATSSSSS 91
>gb|AAA97877.1| (U43599) microfilarial sheath protein SHP3 precursor [Brugia
pahangi]
Length = 238
Score = 29.3 bits (64), Expect = 7.8
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 18 VSSTTRHSQTPRASTVLXXXXXXAT--DGTRAWRGPSAASTTIAPGGAMHTLGSSSHTTN 191
V+++T S T +++T + +T + T +A+STT ++ T +SS T+
Sbjct: 53 VTTSTASSTTSKSTTTVTTSTASSTTSESTTTVTTSTASSTTSESTTSVTTSTASSTTSE 112
Query: 192 SQGTRTTSRHSCTS 233
S + TTS S T+
Sbjct: 113 STTSVTTSTASSTT 126
>emb|CAA22836.1| (AL035245) /prediction=(method:''genefinder'',
version:''084'')~/prediction=(method:''genscan'',
version:''1.0'')~/match=(desc:''THR4 GENE'',
species:''TENEBRIO MOLITOR (YELLOW MEALWORM)'',
ranges:(query:20872..21021,
target:SPTREMBL::O61228:9..58, sco>
Length = 1464
Score = 29.3 bits (64), Expect = 7.8
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 16/60 (26%)
Frame = +3
Query: 93 DGTRAWRGPSAASTTIAPGGAMHTLG----------------SSSHTTNSQGTRTTSRHS 224
DG WRG A T + GA + SSS +++S + +TS S
Sbjct: 110 DGRDGWRGAGGAGTAVTASGAGPCVSTSSTRAAARTSSTSSLSSSSSSSSSTSSSTSSAS 169
Query: 225 CTSLPMFRCTCPGGRS 272
T+ TCP S
Sbjct: 170 PTAGASSTATCPASSS 185
>pir||T16509 hypothetical protein F59A6.3 - Caenorhabditis elegans
gb|AAK31523.1| (U41994) similar to glycoproteins [Caenorhabditis elegans]
Length = 786
Score = 29.3 bits (64), Expect = 7.8
Identities = 23/70 (32%), Positives = 31/70 (43%), Gaps = 6/70 (8%)
Frame = +3
Query: 24 STTRHSQTPRASTVLXXXXXXATDGTRAWRGPS--AASTTIAPGGAMHTLGSSSHTTN-- 191
STT T + + T G GPS + ST GA T GS+ TT+
Sbjct: 498 STTSGPTTSSGPSTVSERTLSTTSGPSTTSGPSTTSGSTVSTTPGASTTSGSTQSTTSGP 557
Query: 192 --SQGTRTTSRHSCTS 233
S G T SR + ++
Sbjct: 558 STSSGPSTASRSTVST 573
>pir||I53641 mucin 5AC - human (fragment)
gb|AAC41774.1| (L46721) mucin [Homo sapiens]
Length = 164
Score = 29.3 bits (64), Expect = 7.8
Identities = 22/80 (27%), Positives = 33/80 (40%), Gaps = 1/80 (1%)
Frame = +3
Query: 27 TTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHT-TNSQGT 203
TT + P ST + T + STT+AP + + ++S T T + T
Sbjct: 44 TTSTTSAPTTSTTSAPTTSTTSAPTTSTPSAPTTSTTLAPTTSTTSAPTTSTTSTPTSST 103
Query: 204 RTTSRHSCTSLPMFRCTCPGG 266
+T + S TS TC G
Sbjct: 104 TSTPQTSTTSASTTSITCGPG 124
>pir||T21790 hypothetical protein F35E8.7 - Caenorhabditis elegans
emb|CAB04296.1| (Z81529) predicted using Genefinder~contains similarity to Pfam
domain: PF01549 (Domain of unknown function),
Score=239.8, E-value=1.3e-68, N=1 [Caenorhabditis
elegans]
Length = 288
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 99 TRAWRGPSAASTTIAPGGAMHTLGSSSHTTNSQGTRTTSRHSCTSLPMFRCT--CPGGRS 272
T + P+A +TT+AP T ++ TT + T TT + + CT P GR+
Sbjct: 197 TTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAAATTTAAACTSYIPDGRT 256
>pir||S53363 mucin 5AC (clone JER58) - human (fragment)
emb|CAA84032.1| (Z34278) mucin [Homo sapiens]
Length = 279
Score = 29.3 bits (64), Expect = 7.8
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +3
Query: 27 TTRHSQTPRASTVLXXXXXXATDGTRAWRGPSAASTTIAPGGAMHTLGSSSHTTNSQGTR 206
TTR + P++ST T G P ++T + T ++ TT++ T
Sbjct: 29 TTRTTSAPKSSTT-SAATTSTTSGPETTPRPVPTTSTTSSPTTSTTSAPTTSTTSASTTS 87
Query: 207 TTSRHSCTSLPM 242
TTS T P+
Sbjct: 88 TTSGAGTTPSPV 99
>gb|AAF52717.1| (AE003622) CG9487 gene product [Drosophila melanogaster]
Length = 1857
Score = 29.3 bits (64), Expect = 7.8
Identities = 22/80 (27%), Positives = 36/80 (44%), Gaps = 2/80 (2%)
Frame = +3
Query: 21 SSTTRHSQTPRASTVLXXXXXXATDGTRAWRGPSA--ASTTIAPGGAMHTLGSSSHTTNS 194
SS +RHS+ P + G+R R PS +S +I +H ++S T +S
Sbjct: 1575 SSRSRHSEHP-------------SSGSRESRRPSKTRSSRSIHDSATIHKKSTTSTTASS 1621
Query: 195 QGTRTTSRHSCTSLPMFRCTCP 260
+ ++TT+ S T P
Sbjct: 1622 KASKTTAHKPSASASASTTTAP 1643
>gb|AAD20944.1| (AF113001) silencing mediator of retinoic acid and thyroid hormone
receptor alpha [Mus musculus]
Length = 2473
Score = 29.3 bits (64), Expect = 7.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -2
Query: 104 TSPIGRSPASSPQHCRCPRSL*MPGS 27
T P GR PASSP PRSL P S
Sbjct: 1920 TKPPGREPASSPSKSSEPRSLAPPSS 1945
Database: nr
Posted date: Sep 1, 2001 3:31 AM
Number of letters in database: 238,836,854
Number of sequences in database: 750,817
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,415,768
Number of Sequences: 750817
Number of extensions: 3694938
Number of successful extensions: 13981
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 12738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13917
length of database: 238,836,854
effective HSP length: 66
effective length of database: 189,282,932
effective search space used: 4542790368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)