The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S2_1_A10_T7.seq Fgr-S2_1_A10_T7 0 0 0 1 391
(390 letters)
Database: nr
750,817 sequences; 238,836,854 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF55231.1| (AE003710) CG4828 gene product [Drosophila m... 30 3.9
emb|CAC28754.1| (AL513463) conserved hypothetical protein [... 30 5.1
gb|AAK84216.1|AF397208_1 (AF397208) zinc finger protein ZFE... 30 5.1
pir||T14155 zinc finger protein Peg3 - mouse >gi|2791678|gb... 29 8.7
pir||T28905 hypothetical protein T25B6.7 - Caenorhabditis e... 29 8.7
gb|AAF26923.1|AF210843_20 (AF210843) polyketide synthase [P... 29 8.7
>gb|AAF55231.1| (AE003710) CG4828 gene product [Drosophila melanogaster]
Length = 755
Score = 30.0 bits (66), Expect = 3.9
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 389 RGRGRGTSTFHPYPY*LSMVVVAPLPRTLLPSRSTPSLDTMDDDSLPGSTPTMKHWS 219
RGRGRG + PY Y V P P++ P D S+P +T + WS
Sbjct: 16 RGRGRGGGAYRPYFYFRRNGRVIPAGGNRQPNQGEPG--APDAPSVPPATRQPRGWS 70
>emb|CAC28754.1| (AL513463) conserved hypothetical protein [Neurospora crassa]
Length = 279
Score = 29.6 bits (65), Expect = 5.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 324 GAIASDVVAQPVNALSGHHG 265
GA AS + PVNA GHHG
Sbjct: 117 GAAASSAASSPVNAAPGHHG 136
>gb|AAK84216.1|AF397208_1 (AF397208) zinc finger protein ZFEND [Mus musculus]
Length = 484
Score = 29.6 bits (65), Expect = 5.1
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 329 VVAPLPRTLLPSRSTPSLDTMDDDSLP-GSTPT 234
V+ P+P L PS TPS D DSLP G T T
Sbjct: 13 VIGPVPLVLDPSNDTPSPAAPDVDSLPSGLTAT 45
>pir||T14155 zinc finger protein Peg3 - mouse
gb|AAB96922.1| (AF038939) zinc finger protein [Mus musculus]
Length = 1571
Score = 28.9 bits (63), Expect = 8.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 96 GDDGQLGAPHGEQPPPRDDGRQPNG 170
G DG+ P GE P + QPNG
Sbjct: 1406 GPDGEAAEPDGEAEQPNGEAEQPNG 1430
>pir||T28905 hypothetical protein T25B6.7 - Caenorhabditis elegans
gb|AAC48222.1| (U41546) similar to sodium:neurotransmitter symporter family (SNF)
[Caenorhabditis elegans]
Length = 1039
Score = 28.9 bits (63), Expect = 8.7
Identities = 17/39 (43%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Frame = -2
Query: 338 SMVVVAPLPRTL--LPSRSTPS-LDTMDDDSLPGSTPTMKHW 222
S V PL RT+ LP S+P + T+D +L TP HW
Sbjct: 94 SSSVAPPLSRTISSLPGVSSPDVIQTIDVSALEDQTPQRPHW 135
>gb|AAF26923.1|AF210843_20 (AF210843) polyketide synthase [Polyangium cellulosum]
Length = 2439
Score = 28.9 bits (63), Expect = 8.7
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = -2
Query: 149 ISWWGLFTMGSTKLPVIAKPTLAACNWYEESSDRNNGGASDNDLPGRPL 3
++W G+F G ++P+ P W E DR G G PL
Sbjct: 875 VTWSGVFPSGGRRVPLPTYPWQRERYWIEAPVDREADGTGRARAGGHPL 923
Database: nr
Posted date: Sep 1, 2001 3:31 AM
Number of letters in database: 238,836,854
Number of sequences in database: 750,817
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,230,257
Number of Sequences: 750817
Number of extensions: 3365343
Number of successful extensions: 11695
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11691
length of database: 238,836,854
effective HSP length: 105
effective length of database: 160,001,069
effective search space used: 3840025656
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)