NCBI BLAST Search Results

    The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.

BLASTX 2.2.1 [Apr-13-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Fgr-S2_1_A11_T7.seq Fgr-S2_1_A11_T7 0 0 0 1 542
         (537 letters)

Database: nr
           750,817 sequences; 238,836,854 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P50888|RL24_HORVU  60S RIBOSOMAL PROTEIN L24 >gi|7440778|...   110  5e-24
dbj|BAB63242.1|  (AP003285) putative 60S ribosomal protein L...    97  5e-20
gb|AAG13986.1|AF298827_1  (AF298827) 60S ribosomal protein L...    91  7e-18
ref|NP_181200.1|  60S ribosomal protein L24 [Arabidopsis tha...    86  1e-16
emb|CAC01930.1|  (AJ293729) 60S ribosomal protein L24 (RL24)...    86  1e-16
ref|NP_190870.1|  60S ribosomal protein - like [Arabidopsis ...    86  1e-16
sp|O65743|RL24_CICAR  60S RIBOSOMAL PROTEIN L24 >gi|2961300|...    85  4e-16
sp|P38666|RL24_ARATH  60S RIBOSOMAL PROTEIN L24                    84  5e-16
pir||T41324  60s ribosomal protein L24 - fission yeast  (Sch...    51  6e-06
pir||T39071  60S ribosomal protein L24 - fission yeast  (Sch...    51  6e-06
sp|P38665|RL24_KLULA  60S RIBOSOMAL PROTEIN L24 (L30) >gi|17...    45  4e-04
gb|AAF53299.1|  (AE003640) CG9282 gene product [Drosophila m...    44  7e-04
ref|NP_011484.1|  Ribosomal protein L24A (rp29) (YL21) (L30A...    44  0.001
gb|AAK95151.1|AF401579_1  (AF401579) ribosomal protein L24 [...    43  0.001
ref|NP_000977.1|  ribosomal protein L24 [Homo sapiens] >gi|1...    43  0.002
ref|NP_011664.1|  Ribosomal protein L24B (rp29) (YL21) (L30B...    43  0.002
ref|XP_016822.2|  similar to ribosomal protein L24 (H. sapie...    40  0.008
gb|AAG13295.1|AF266175_1  (AF266175) 60S ribosomal protein L...    40  0.010
gb|AAK92161.1|AF400189_1  (AF400189) ribosomal protein L24 [...    40  0.013
ref|XP_040171.1|  unc93 (C.elegans) homolog B [Homo sapiens]       31  4.7

>sp|P50888|RL24_HORVU 60S RIBOSOMAL PROTEIN L24
 pir||T06178 ribosomal protein L24 - barley
 emb|CAA63960.1| (X94296) L24 ribosomal protein [Hordeum vulgare]
          Length = 162

 Score =  110 bits (276), Expect = 5e-24
 Identities = 61/94 (64%), Positives = 62/94 (65%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALX 195
           +AMYRKQHKKDIHAEAA         PYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 
Sbjct: 54  TAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALR 113

Query: 196 XXXXXXXXXXXXXXXXXXXXXXSQKSQGGKGAVQ 297
                                 SQKSQGGKGAVQ
Sbjct: 114 EIKERIKKTKDEKKAKKAEVTKSQKSQGGKGAVQ 147



>dbj|BAB63242.1| (AP003285) putative 60S ribosomal protein L24 [Oryza sativa]
          Length = 170

 Score = 97.4 bits (241), Expect = 5e-20
 Identities = 54/94 (57%), Positives = 57/94 (60%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALX 195
           +AMYRKQHKKDIHAEA          PYSRSIVGATLEVIQKKR+EKPEVRDAAREAAL 
Sbjct: 62  TAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALR 121

Query: 196 XXXXXXXXXXXXXXXXXXXXXXSQKSQGGKGAVQ 297
                                 SQK+Q   GA Q
Sbjct: 122 EIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQ 155



>gb|AAG13986.1|AF298827_1 (AF298827) 60S ribosomal protein L24 [Prunus avium]
          Length = 186

 Score = 90.5 bits (223), Expect = 7e-18
 Identities = 52/93 (55%), Positives = 56/93 (59%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALX 195
           +AMYRKQHKKDI  EA          PYSRSIVGATLEVIQK+R EKPEVRDAAREAAL 
Sbjct: 54  TAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALR 113

Query: 196 XXXXXXXXXXXXXXXXXXXXXXSQKSQGGKGAV 294
                                 SQKSQ GKG++
Sbjct: 114 EIKERIKKTKDEKKAKKAEVTKSQKSQ-GKGSI 145



>ref|NP_181200.1| 60S ribosomal protein L24 [Arabidopsis thaliana]
 gb|AAD20138.1| (AC006282) 60S ribosomal protein L24 [Arabidopsis thaliana]
          Length = 177

 Score = 86.3 bits (212), Expect = 1e-16
 Identities = 45/59 (76%), Positives = 46/59 (77%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           +AMYRKQHKKD   EA          PYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL
Sbjct: 67  TAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 125



>emb|CAC01930.1| (AJ293729) 60S ribosomal protein L24 (RL24) [Arabidopsis thaliana]
          Length = 164

 Score = 86.3 bits (212), Expect = 1e-16
 Identities = 45/59 (76%), Positives = 46/59 (77%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           +AMYRKQHKKD   EA          PYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL
Sbjct: 54  TAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112



>ref|NP_190870.1| 60S ribosomal protein - like [Arabidopsis thaliana]
 pir||T47559 60S ribosomal protein-like - Arabidopsis thaliana
 emb|CAB86906.1| (AL132969) 60S ribosomal protein-like [Arabidopsis thaliana]
          Length = 163

 Score = 86.3 bits (212), Expect = 1e-16
 Identities = 45/59 (76%), Positives = 46/59 (77%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           +AMYRKQHKKD   EA          PYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL
Sbjct: 54  TAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112



>sp|O65743|RL24_CICAR 60S RIBOSOMAL PROTEIN L24
 emb|CAA12358.1| (AJ225027) ribosomal protein L24 [Cicer arietinum]
          Length = 164

 Score = 84.7 bits (208), Expect = 4e-16
 Identities = 48/94 (51%), Positives = 51/94 (54%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALX 195
           +AM+RKQHKKD   EA          PYSRSIVGATLEVIQKKR EKPEVRDAAREAAL 
Sbjct: 54  TAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALR 113

Query: 196 XXXXXXXXXXXXXXXXXXXXXXSQKSQGGKGAVQ 297
                                   +   GKG VQ
Sbjct: 114 EIKERIKKTKDEKKAKKAEVASKAQKSQGKGNVQ 147



>sp|P38666|RL24_ARATH 60S RIBOSOMAL PROTEIN L24
          Length = 163

 Score = 84.3 bits (207), Expect = 5e-16
 Identities = 47/59 (79%), Positives = 49/59 (82%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           +A+YRKQHKKD   EA          PYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL
Sbjct: 54  TAIYRKQHKKDAAQEAVKRRRXXTKXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112



>pir||T41324 60s ribosomal protein L24 - fission yeast  (Schizosaccharomyces
           pombe)
 emb|CAA20919.1| (AL031603) 60s ribosomal protein L24 [Schizosaccharomyces pombe]
 dbj|BAA84653.1| (AB032714) rpl24 [Schizosaccharomyces pombe]
          Length = 149

 Score = 50.8 bits (120), Expect = 6e-06
 Identities = 28/59 (47%), Positives = 37/59 (62%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           + +YR+ HKK I  E A          + R IVGA L+VI++KR ++PEVR AAR AAL
Sbjct: 52  TVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAAL 109



>pir||T39071 60S ribosomal protein L24 - fission yeast  (Schizosaccharomyces
           pombe)
 emb|CAB03611.1| (Z81317) 60S ribosomal protein L24 [Schizosaccharomyces pombe]
          Length = 149

 Score = 50.8 bits (120), Expect = 6e-06
 Identities = 28/59 (47%), Positives = 37/59 (62%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           + +YR+ HKK I  E A          + R IVGA L+VI++KR ++PEVR AAR AAL
Sbjct: 52  TVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAAL 109



>sp|P38665|RL24_KLULA 60S RIBOSOMAL PROTEIN L24 (L30)
 gb|AAA35269.1| (L05777) ribosomal protein L30 [Kluyveromyces lactis]
          Length = 155

 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 23/56 (41%), Positives = 35/56 (62%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAARE 183
           + +YR+ HKK I  E A            R++VGA+LE+I+++R+ KPEVR A R+
Sbjct: 52  TVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQRD 106



>gb|AAF53299.1| (AE003640) CG9282 gene product [Drosophila melanogaster]
          Length = 155

 Score = 43.9 bits (102), Expect = 7e-04
 Identities = 24/59 (40%), Positives = 35/59 (58%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           + +YR++H+K I  EA+          + R+IVGA+L  I  KR  KPEVR A R+ A+
Sbjct: 52  TVLYRRKHRKGIEEEASKKRTRRTQK-FQRAIVGASLAEILAKRNMKPEVRKAQRDQAI 109



>ref|NP_011484.1| Ribosomal protein L24A (rp29) (YL21) (L30A); Rpl24ap [Saccharomyces
           cerevisiae]
 sp|P04449|R24A_YEAST 60S RIBOSOMAL PROTEIN L24-A (L30A) (RP29) (YL21)
 pir||R6BYT9 ribosomal protein L24.e.A, cytosolic - yeast (Saccharomyces
           cerevisiae)
 gb|AAA35004.1| (K02650) ribosomal protein L30A [Saccharomyces cerevisiae]
 emb|CAA96732.1| (Z72553) ORF YGL031c [Saccharomyces cerevisiae]
          Length = 155

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 31/94 (32%), Positives = 42/94 (43%), Gaps = 4/94 (4%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALX 195
           + ++RK HKK I  E A            R I GA+L++I+++R+ KPEVR A RE  L 
Sbjct: 52  TVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLK 110

Query: 196 XXXXXXXXXXXXXXXXXXXXXXSQKS----QGGKGAVQ 297
                                 +Q S    Q  KGA Q
Sbjct: 111 ANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQ 148



>gb|AAK95151.1|AF401579_1 (AF401579) ribosomal protein L24 [Ictalurus punctatus]
          Length = 157

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 23/59 (38%), Positives = 33/59 (54%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           + +YR++HKK   +E            + R+I GA+L  I  KR +KPEVR A RE A+
Sbjct: 52  TVLYRRKHKKG-QSEEVTKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAI 109



>ref|NP_000977.1| ribosomal protein L24 [Homo sapiens]
 ref|NP_071960.1| ribosomal protein L24 [Rattus norvegicus]
 ref|XP_015463.1| ribosomal protein L24 [Homo sapiens]
 ref|XP_040555.1| ribosomal protein L24 [Homo sapiens]
 sp|P38663|RL24_HUMAN 60S RIBOSOMAL PROTEIN L24 (L30)
 pir||JN0549 ribosomal protein L24 - human
 pir||JC2444 ribosomal protein L24, cytosolic [validated] - rat
 gb|AAC28251.1| (M94314) ribosomal protein L30 [Homo sapiens]
 emb|CAA55203.1| (X78443) ribosomal protein L24 [Rattus norvegicus]
 gb|AAC16388.1| (AF063243) ribosomal protein L30 [Bos taurus]
 gb|AAH00690.1|AAH00690 (BC000690) ribosomal protein L24 [Homo sapiens]
 gb|AAH02110.1|AAH02110 (BC002110) ribosomal protein L24 [Mus musculus]
 dbj|BAB31374.1| (AK018731) putative [Mus musculus]
          Length = 157

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 23/59 (38%), Positives = 33/59 (54%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           + +YR++HKK   +E            + R+I GA+L  I  KR +KPEVR A RE A+
Sbjct: 52  TVLYRRKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109



>ref|NP_011664.1| Ribosomal protein L24B (rp29) (YL21) (L30B); Rpl24bp [Saccharomyces
           cerevisiae]
 sp|P24000|R24B_YEAST 60S RIBOSOMAL PROTEIN L24-B (L30B) (RP29) (YL21)
 pir||R6BYY0 ribosomal protein L24.e.B, cytosolic - yeast (Saccharomyces
           cerevisiae)
 gb|AAA34736.1| (M34387) ribosomal protein L30 (RPL30B), (3' end of exon not
           determined) [Saccharomyces cerevisiae]
 emb|CAA59806.1| (X85807) ORF G6635 [Saccharomyces cerevisiae]
 emb|CAA97162.1| (Z72933) ORF YGR148c [Saccharomyces cerevisiae]
          Length = 155

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 24/59 (40%), Positives = 34/59 (56%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           + ++RK HKK I  E A            R I GA+L++I+++R+ KPEVR A RE  L
Sbjct: 52  TVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKL 109



>ref|XP_016822.2| similar to ribosomal protein L24 (H. sapiens) [Homo sapiens]
          Length = 157

 Score = 40.4 bits (93), Expect = 0.008
 Identities = 22/59 (37%), Positives = 33/59 (55%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           + ++R++HKK   +E            + R+I GA+L  I  KR +KPEVR A RE A+
Sbjct: 52  TVLHRRKHKKG-ESEEIQKKRTHPAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109



>gb|AAG13295.1|AF266175_1 (AF266175) 60S ribosomal protein L24 [Gillichthys mirabilis]
          Length = 156

 Score = 40.0 bits (92), Expect = 0.010
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAR 180
           + +YR++HKK   +E            + R+I GA+L  I  KR +KPEVR A R
Sbjct: 52  TVLYRRKHKKG-QSEEVTKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQR 105



>gb|AAK92161.1|AF400189_1 (AF400189) ribosomal protein L24 [Spodoptera frugiperda]
          Length = 155

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 23/59 (38%), Positives = 31/59 (51%)
 Frame = +1

Query: 16  SAMYRKQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 192
           + +YR++ KK    E            Y R+IVGA+L  I  KR  KPEVR A R+ A+
Sbjct: 52  TVLYRRKFKKG-QEEEQTKKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQRDQAI 109



>ref|XP_040171.1| unc93 (C.elegans) homolog B [Homo sapiens]
          Length = 447

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 3/38 (7%)
 Frame = -3

Query: 142 SSG*LPEWHQQSTVSTASWWCGASS---WQPQHGCPSCAAS 29
           +S  L  W  Q   S A W CG  +   W P+ GC  C+ S
Sbjct: 377 TSSWLTAWAPQPPHSWACWACGCHARCPWWPEQGCTCCSPS 417



  Database: nr
    Posted date:  Sep 1, 2001  3:31 AM
  Number of letters in database: 238,836,854
  Number of sequences in database:  750,817
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.267   0.0410 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,389,716
Number of Sequences: 750817
Number of extensions: 3456276
Number of successful extensions: 9615
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 9382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9607
length of database: 238,836,854
effective HSP length: 111
effective length of database: 155,496,167
effective search space used: 10418243189
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)