Score E
Sequences producing significant alignments: (bits) Value
sp|P55857|SMT3_ORYSA UBIQUITIN-LIKE PROTEIN SMT3 >gi|744681... 104 1e-22
emb|CAB60728.1| (AJ012717) SUMO protein [Lycopersicon escul... 99 1e-20
ref|NP_200327.1| ubiquitin-like protein SMT3-like [Arabidop... 97 4e-20
ref|NP_194414.1| ubiquitin-like protein [Arabidopsis thalia... 96 5e-20
sp|P55852|SMT3_ARATH UBIQUITIN-LIKE PROTEIN SMT3 >gi|170737... 96 5e-20
pir||T09529 ubiquitin-like protein - chickpea >gi|2558518|e... 92 7e-19
sp|O13351|SMT3_SCHPO UBIQUITIN-LIKE PROTEIN SMT3/PMT3 >gi|7... 66 5e-11
pir||T43537 ubiquitin-like protein smt3 - fission yeast (S... 66 5e-11
ref|NP_200328.1| ubiquitin-like protein [Arabidopsis thalia... 59 8e-09
pdb|1A5R| Structure Determination Of The Small Ubiquitin... 56 7e-08
ref|NP_003343.1| ubiquitin-like 1 (sentrin); Ubiquitin-like... 56 7e-08
gb|AAF97049.1|AF242526_1 (AF242526) sentrin [Cervus nippon] 55 9e-08
ref|NP_199682.1| putative protein [Arabidopsis thaliana] >g... 55 9e-08
sp|P55853|SMT3_CAEEL UBIQUITIN-LIKE PROTEIN SMT3 >gi|744681... 53 5e-07
emb|CAB09807.1| (Z97073) SUMO-1 protein [Xenopus laevis] 53 5e-07
gb|AAH08450.1|AAH08450 (BC008450) Unknown (protein for MGC:... 53 5e-07
ref|NP_008868.1| SMT3 (suppressor of mif two 3, yeast) homo... 53 5e-07
ref|NP_064313.1| SMT3 (supressor of mif two, 3) homolog 1 (... 53 6e-07
gb|AAD19219.1| (AF053083) ubiquitin-like protein SMT3 [Dros... 53 6e-07
ref|XP_049691.1| similar to UBIQUITIN-LIKE PROTEIN SMT3C (U... 53 6e-07
ref|XP_036094.1| SMT3 (suppressor of mif two 3, yeast) homo... 52 8e-07
gb|AAB92355.1| (U89438) nonstructural protein P125-2 [pesti... 52 8e-07
pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 ... 51 2e-06
ref|NP_010798.1| ubiquitin-like protein; Smt3p [Saccharomyc... 51 2e-06
ref|NP_008867.1| SMT3 (suppressor of mif two 3, yeast) homo... 50 3e-06
ref|NP_180835.1| hypothetical protein [Arabidopsis thaliana... 50 4e-06
dbj|BAA89293.1| (AB036430) small ubiquitin-related protein ... 48 2e-05
ref|NP_081946.1| RIKEN cDNA 4933411G06 gene [Mus musculus] ... 45 2e-04
emb|CAA20019.1| (AL031133) dJ281H8.4 (Ubiquitin-Like protei... 44 3e-04
ref|NP_199681.1| putative protein [Arabidopsis thaliana] >g... 42 8e-04
dbj|BAB17279.1| (AB050511) hypothetical protein [Macaca fas... 33 0.64
ref|NP_116204.1| hypothetical protein FLJ14639 [Homo sapien... 33 0.64
gb|AAC52963.1| (U76759) nuclear protein NIP45 [Mus musculus] 32 0.84
dbj|BAB07590.1| (AP001520) Rieske [2Fe-2S] iron-sulfur prot... 32 1.4
pir||G69130 conserved hypothetical protein MTH246 - Methano... 31 2.4
dbj|BAB15721.1| (AK024431) FLJ00020 protein [Homo sapiens] 30 3.2
gb|AAK83024.1|AF286341_1 (AF286341) AT-hook protein AKNA [H... 30 3.2
ref|XP_027013.1| AT-hook transcription factor AKNA [Homo sa... 30 3.2
gb|AAC33294.2| (AF083440) collagen XVIII [Gallus gallus] 30 5.4
ref|NP_057288.1| growth differentiation factor 2; bone morp... 30 5.4
gb|AAK77711.1|AF369029_42 (AF369029) ORF42 [white spot synd... 30 5.4
gb|AAF48904.1| (AE003510) CG7358 gene product [Drosophila m... 30 5.4
dbj|BAB24331.1| (AK005947) putative [Mus musculus] 29 7.1
pir||T20269 hypothetical protein C56A3.8 - Caenorhabditis e... 29 9.3
ref|XP_041583.1| similar to UBIQUITIN-LIKE PROTEIN SMT3B (S... 29 9.3
ref|NP_014157.1| Apg2p [Saccharomyces cerevisiae] >gi|17308... 29 9.3
>sp|P55857|SMT3_ORYSA UBIQUITIN-LIKE PROTEIN SMT3
pir||T04102 smt3 protein - rice
emb|CAA67922.1| (X99608) ubiquitin-like protein [Oryza sativa]
Length = 100
Score = 104 bits (260), Expect = 1e-22
Identities = 47/51 (92%), Positives = 50/51 (97%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGCFP 173
AYCDRQSVD+N+IAFLFDGRRLRGEQTPDELEME+GDEIDAMLHQTGGC P
Sbjct: 49 AYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCLP 99
>emb|CAB60728.1| (AJ012717) SUMO protein [Lycopersicon esculentum]
Length = 105
Score = 98.6 bits (244), Expect = 1e-20
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
AYCDRQSVD+NSIAFLFDGRRLR EQTPDELEMEEGDEIDAMLHQTGG
Sbjct: 49 AYCDRQSVDMNSIAFLFDGRRLRAEQTPDELEMEEGDEIDAMLHQTGG 96
>ref|NP_200327.1| ubiquitin-like protein SMT3-like [Arabidopsis thaliana]
dbj|BAB08585.1| (AB010071) ubiquitin-like protein SMT3-like [Arabidopsis thaliana]
Length = 103
Score = 96.7 bits (239), Expect = 4e-20
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
AYCDRQSVD NSIAFLFDGRRLR EQTPDELEME+GDEIDAMLHQTGG
Sbjct: 45 AYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 92
>ref|NP_194414.1| ubiquitin-like protein [Arabidopsis thaliana]
pir||T04807 SMT3 protein homolog F10M23.180 - Arabidopsis thaliana
emb|CAB36530.1| (AL035440) ubiquitin-like protein [Arabidopsis thaliana]
emb|CAB79539.1| (AL161565) ubiquitin-like protein [Arabidopsis thaliana]
Length = 100
Score = 96.3 bits (238), Expect = 5e-20
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
AYCDRQSVD+NSIAFLFDGRRLR EQTPDEL+ME+GDEIDAMLHQTGG
Sbjct: 46 AYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93
>sp|P55852|SMT3_ARATH UBIQUITIN-LIKE PROTEIN SMT3
emb|CAA67923.1| (X99609) ubiquitin-like protein [Arabidopsis thaliana]
Length = 104
Score = 96.3 bits (238), Expect = 5e-20
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
AYCDRQSVD+NSIAFLFDGRRLR EQTPDEL+ME+GDEIDAMLHQTGG
Sbjct: 46 AYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93
>pir||T09529 ubiquitin-like protein - chickpea
emb|CAA05079.1| (AJ001901) Ubiquitin-like protein [Cicer arietinum]
Length = 115
Score = 92.4 bits (228), Expect = 7e-19
Identities = 43/46 (93%), Positives = 45/46 (97%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQT 158
AYCDRQSVDLNSIAFLFDGRRLR EQTPDEL+ME+GDEIDAMLHQT
Sbjct: 52 AYCDRQSVDLNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQT 97
>sp|O13351|SMT3_SCHPO UBIQUITIN-LIKE PROTEIN SMT3/PMT3
pir||T40313 ubiquitin-like modifier protein - fission yeast
(Schizosaccharomyces pombe)
dbj|BAA32595.1| (AB017187) Pmt3p [Schizosaccharomyces pombe]
emb|CAB44758.1| (AL078627) ubiquitin-like modifier [Schizosaccharomyces pombe]
Length = 117
Score = 66.2 bits (160), Expect = 5e-11
Identities = 28/48 (58%), Positives = 37/48 (76%)
Frame = +3
Query: 24 YCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGC 167
YC RQ +NS+ FL DG R+R +QTP EL+ME+GD+I+A+L Q GGC
Sbjct: 65 YCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGGC 112
>pir||T43537 ubiquitin-like protein smt3 - fission yeast (Schizosaccharomyces
pombe)
gb|AAB71541.1| (AF019235) ubiquitin-like protein; SpSmt3p [Schizosaccharomyces
pombe]
Length = 90
Score = 66.2 bits (160), Expect = 5e-11
Identities = 28/48 (58%), Positives = 37/48 (76%)
Frame = +3
Query: 24 YCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGC 167
YC RQ +NS+ FL DG R+R +QTP EL+ME+GD+I+A+L Q GGC
Sbjct: 38 YCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGGC 85
>ref|NP_200328.1| ubiquitin-like protein [Arabidopsis thaliana]
dbj|BAB08586.1| (AB010071) ubiquitin-like protein [Arabidopsis thaliana]
Length = 111
Score = 58.9 bits (141), Expect = 8e-09
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +3
Query: 24 YCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
YCDR+ + L++ AF+F+G R+ G +TPDEL+ME+GD IDA +GG
Sbjct: 47 YCDRRGLKLDAFAFIFNGARIGGLETPDELDMEDGDVIDACRAMSGG 93
>pdb|1A5R| Structure Determination Of The Small Ubiquitin-Related Modifier
Sumo-1, Nmr, 10 Structures
Length = 103
Score = 55.8 bits (133), Expect = 7e-08
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
+YC RQ V +NS+ FLF+G+R+ TP EL MEE D I+ QTGG
Sbjct: 52 SYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 99
>ref|NP_003343.1| ubiquitin-like 1 (sentrin); Ubiquitin-like 1; sentrin;
ubiquitin-like 1, 12kD [Homo sapiens]
ref|NP_033486.1| ubiquitin-like 1 [Mus musculus]
ref|XP_028031.1| ubiquitin-like 1 (sentrin) [Homo sapiens]
ref|XP_028033.1| ubiquitin-like 1 (sentrin) [Homo sapiens]
ref|XP_028034.1| ubiquitin-like 1 (sentrin) [Homo sapiens]
ref|XP_028029.1| ubiquitin-like 1 (sentrin) [Homo sapiens]
sp|Q93068|SM33_HUMAN UBIQUITIN-LIKE PROTEIN SMT3C (UBIQUITIN-HOMOLOGY DOMAIN PROTEIN
PIC1) (UBIQUITIN-LIKE PROTEIN UBL1) (UBIQUITIN-RELATED
PROTEIN SUMO-1) (GAP MODIFYING PROTEIN 1) (GMP1)
(SENTRIN)
gb|AAB40388.1| (U61397) ubiquitin-homology domain protein PIC1 [Homo sapiens]
gb|AAC50733.1| (U38784) similar to ubiquitin and to yeast Smt3p (suppressor of
MIF2); Method: conceptual translation supplied by author
[Homo sapiens]
gb|AAB40390.1| (U72722) gap modifying protein 1 [Homo sapiens]
gb|AAC50996.1| (U67122) SUMO-1 [Homo sapiens]
gb|AAB39999.1| (U83117) sentrin [Homo sapiens]
emb|CAA67898.1| (X99586) SMT3C protein [Homo sapiens]
gb|AAC39959.1| (AF033353) ubiquitin-homology domain protein [Mus musculus]
dbj|BAB22172.1| (AK002536) putative [Mus musculus]
dbj|BAB27379.1| (AK011074) putative [Mus musculus]
gb|AAH06462.1|AAH06462 (BC006462) ubiquitin-like 1 (sentrin) [Homo sapiens]
Length = 101
Score = 55.8 bits (133), Expect = 7e-08
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
+YC RQ V +NS+ FLF+G+R+ TP EL MEE D I+ QTGG
Sbjct: 50 SYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>gb|AAF97049.1|AF242526_1 (AF242526) sentrin [Cervus nippon]
Length = 101
Score = 55.5 bits (132), Expect = 9e-08
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
+YC RQ V +NS+ FLF+G+R+ TP EL MEE D I+ QTGG
Sbjct: 50 SYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYHEQTGG 97
>ref|NP_199682.1| putative protein [Arabidopsis thaliana]
dbj|BAB09424.1| (AB012242) contains similarity to small ubiquitin-related
protein~gene_id:K24G6.4 [Arabidopsis thaliana]
Length = 114
Score = 55.5 bits (132), Expect = 9e-08
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +3
Query: 24 YCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGCFP 173
Y + ++ N+ FLFDG R+R TPDELE ++GDEIDAML Q G P
Sbjct: 58 YTKMRGIEWNTFRFLFDGSRIREYHTPDELERKDGDEIDAMLCQQSGFGP 107
>sp|P55853|SMT3_CAEEL UBIQUITIN-LIKE PROTEIN SMT3
pir||JC5582 SMT3 protein - Caenorhabditis elegans
emb|CAA67914.1| (X99600) ubiquitin-like protein [Caenorhabditis elegans]
gb|AAB67608.1| (U94830) ubiquitin-like protein [Caenorhabditis elegans]
gb|AAK18969.1| (AF043701) contains similarity to ubiquitin-like proteins
[Caenorhabditis elegans]
Length = 91
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
+Y DR V +NS+ FLFDGRR+ + TP LEME+ D I+ Q GG
Sbjct: 43 SYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90
>emb|CAB09807.1| (Z97073) SUMO-1 protein [Xenopus laevis]
Length = 102
Score = 53.1 bits (126), Expect = 5e-07
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
+Y RQ V +NS+ FLF+G+R+ QTP EL MEE D I+ QTGG
Sbjct: 51 SYRQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98
>gb|AAH08450.1|AAH08450 (BC008450) Unknown (protein for MGC:14687) [Homo sapiens]
Length = 95
Score = 53.1 bits (126), Expect = 5e-07
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGCF 170
AYC+RQ + + I F FDG+ + TP +LEME+ D ID QTGG +
Sbjct: 46 AYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 95
>ref|NP_008868.1| SMT3 (suppressor of mif two 3, yeast) homolog 2 [Homo sapiens]
ref|XP_039809.1| similar to GASTRIN/CHOLECYSTOKININ TYPE B RECEPTOR (CCK-B RECEPTOR)
(CCK-BR) (H. sapiens) [Homo sapiens]
sp|P55855|SM32_HUMAN UBIQUITIN-LIKE PROTEIN SMT3B (SENTRIN 2)
pir||JC4760 SMT3 protein - human
emb|CAA67897.1| (X99585) SMT3B protein [Homo sapiens]
gb|AAB49682.1| (U89439) ubiquitin-like protein [Bos taurus]
gb|AAD45399.1|L76416_1 (L76416) MIF2 suppressor [Homo sapiens]
dbj|BAB28360.1| (AK012619) putative [Mus musculus]
Length = 95
Score = 53.1 bits (126), Expect = 5e-07
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGCF 170
AYC+RQ + + I F FDG+ + TP +LEME+ D ID QTGG +
Sbjct: 46 AYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 95
>ref|NP_064313.1| SMT3 (supressor of mif two, 3) homolog 1 (S. cerevisiae) [Mus
musculus]
gb|AAC99333.1| (AF063847) Smt3A protein [Mus musculus]
dbj|BAB28442.1| (AK012742) putative [Mus musculus]
dbj|BAB28601.1| (AK013019) putative [Mus musculus]
Length = 110
Score = 52.8 bits (125), Expect = 6e-07
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGCFPR 176
AYC+RQ + + I F FDG+ + TP +LEME+ D ID QTGG R
Sbjct: 45 AYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSASR 96
>gb|AAD19219.1| (AF053083) ubiquitin-like protein SMT3 [Drosophila melanogaster]
gb|AAF31702.1|AF218862_1 (AF218862) Smt3 [Drosophila melanogaster]
gb|AAF52470.1| (AE003615) smt3 gene product [Drosophila melanogaster]
Length = 90
Score = 52.8 bits (125), Expect = 6e-07
Identities = 23/48 (47%), Positives = 29/48 (59%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
AYCDR + + + F FDG+ + TP LEMEEGD I+ QTGG
Sbjct: 41 AYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 88
>ref|XP_049691.1| similar to UBIQUITIN-LIKE PROTEIN SMT3C (UBIQUITIN-HOMOLOGY DOMAIN
PROTEIN PIC1) (UBIQUITIN-LIKE PROTEIN UBL1)
(UBIQUITIN-RELATED PROTEIN SUMO-1) (GAP MODIFYING
PROTEIN 1) (GMP1) (SENTRIN) (H. sapiens) [Homo sapiens]
Length = 101
Score = 52.8 bits (125), Expect = 6e-07
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
+YC RQ V +NS FLF+G+R+ TP EL MEE D I+ Q GG
Sbjct: 50 SYCQRQGVPMNSFRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQMGG 97
>ref|XP_036094.1| SMT3 (suppressor of mif two 3, yeast) homolog 1 [Homo sapiens]
ref|XP_009805.4| SMT3 (suppressor of mif two 3, yeast) homolog 1 [Homo sapiens]
gb|AAH00036.1|AAH00036 (BC000036) Similar to SMT3 (suppressor of mif two 3, yeast) homolog
1 [Homo sapiens]
gb|AAH08420.1|AAH08420 (BC008420) SMT3 (suppressor of mif two 3, yeast) homolog 1 [Homo
sapiens]
Length = 103
Score = 52.4 bits (124), Expect = 8e-07
Identities = 23/48 (47%), Positives = 30/48 (61%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
AYC+RQ + + I F FDG+ + TP +LEME+ D ID QTGG
Sbjct: 45 AYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92
>gb|AAB92355.1| (U89438) nonstructural protein P125-2 [pestivirus type 1]
Length = 239
Score = 52.4 bits (124), Expect = 8e-07
Identities = 23/48 (47%), Positives = 30/48 (61%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
AYC+RQ + + I F FDG+ + TP +LEME+ D ID QTGG
Sbjct: 102 AYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 149
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo.
Length = 86
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/48 (43%), Positives = 35/48 (72%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
A+ RQ +++S+ FL+DG R++ +QTP++L+ME+ D I+A Q GG
Sbjct: 39 AFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 86
>ref|NP_010798.1| ubiquitin-like protein; Smt3p [Saccharomyces cerevisiae]
sp|Q12306|SMT3_YEAST UBIQUITIN-LIKE PROTEIN SMT3
pir||S63999 SMT3 protein - yeast (Saccharomyces cerevisiae)
gb|AAB01675.1| (U27233) Smt3p [Saccharomyces cerevisiae]
gb|AAB64951.1| (U33057) suppressor of MIF2 mutations; CAI: 0.31 [Saccharomyces
cerevisiae]
Length = 101
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/48 (43%), Positives = 35/48 (72%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
A+ RQ +++S+ FL+DG R++ +QTP++L+ME+ D I+A Q GG
Sbjct: 51 AFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 98
>ref|NP_008867.1| SMT3 (suppressor of mif two 3, yeast) homolog 1; SMT3, yeast,
homolog 1; ubiquitin-like protein, a human homolog of
the S. cerevisiae SMT3 gene [Homo sapiens]
sp|P55854|SM31_HUMAN UBIQUITIN-LIKE PROTEIN SMT3A
emb|CAA67896.1| (X99584) SMT3A protein [Homo sapiens]
Length = 103
Score = 50.4 bits (119), Expect = 3e-06
Identities = 22/48 (45%), Positives = 29/48 (59%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
AYC+RQ + + I F FDG+ + TP +L ME+ D ID QTGG
Sbjct: 45 AYCERQGLSMRQIRFRFDGQPINETDTPAQLRMEDEDTIDVFQQQTGG 92
>ref|NP_180835.1| hypothetical protein [Arabidopsis thaliana]
pir||T00792 hypothetical protein F24L7.10 - Arabidopsis thaliana
gb|AAC04487.1| (AC003974) hypothetical protein [Arabidopsis thaliana]
Length = 380
Score = 50.1 bits (118), Expect = 4e-06
Identities = 20/48 (41%), Positives = 34/48 (70%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
AYC ++++D +S+ F+++GR ++ QTP +L MEE DEI ++ GG
Sbjct: 328 AYCTKRNLDYSSVRFVYNGREIKARQTPAQLHMEEEDEICMVMELGGG 375
>dbj|BAA89293.1| (AB036430) small ubiquitin-related protein 1 [Oncorhynchus mykiss]
Length = 101
Score = 47.8 bits (112), Expect = 2e-05
Identities = 21/48 (43%), Positives = 31/48 (63%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
+Y RQ V ++++ FLF+G+R+ TP EL ME+ D I+ QTGG
Sbjct: 50 SYSQRQGVHMSTLRFLFEGQRISDNHTPKELGMEDEDVIEVYQEQTGG 97
>ref|NP_081946.1| RIKEN cDNA 4933411G06 gene [Mus musculus]
dbj|BAB30417.1| (AK016770) putative [Mus musculus]
Length = 117
Score = 44.7 bits (104), Expect = 2e-04
Identities = 20/48 (41%), Positives = 31/48 (63%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
+Y R + +NS+ FLF+G+++ + T +EL MEE D I+ QTGG
Sbjct: 49 SYSRRLDLSVNSLRFLFEGQKIADDHTAEELGMEEEDVIEVHQEQTGG 96
>emb|CAA20019.1| (AL031133) dJ281H8.4 (Ubiquitin-Like protein SMT3 LIKE) [Homo
sapiens]
Length = 95
Score = 43.9 bits (102), Expect = 3e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGGCF 170
AYC+ + + + I F F G+ + G P +LEME+ D ID TGG +
Sbjct: 46 AYCEPRGLSVKQIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95
>ref|NP_199681.1| putative protein [Arabidopsis thaliana]
dbj|BAB09423.1| (AB012242) contains similarity to small ubiquitin-related
protein~gene_id:K24G6.3 [Arabidopsis thaliana]
Length = 117
Score = 42.4 bits (98), Expect = 8e-04
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 24 YCDRQSVDLNSIAFLFD-GRRLRGEQTPDELEMEEGDEIDAMLHQTGGCFP 173
Y + ++ N+ FL D G R+R T D++E+++GD+IDA+L Q G P
Sbjct: 61 YAKMRGIEWNTFRFLSDDGSRIREYHTADDMELKDGDQIDALLPQESGFGP 111
>dbj|BAB17279.1| (AB050511) hypothetical protein [Macaca fascicularis]
Length = 408
Score = 32.7 bits (73), Expect = 0.64
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = +3
Query: 24 YCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEID 140
Y + + ++F FDG +L G + P +L ME GD I+
Sbjct: 367 YEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIE 405
>ref|NP_116204.1| hypothetical protein FLJ14639 [Homo sapiens]
dbj|BAB55189.1| (AK027545) unnamed protein product [Homo sapiens]
Length = 138
Score = 32.7 bits (73), Expect = 0.64
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = +3
Query: 24 YCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEID 140
Y + + ++F FDG +L G + P +L ME GD I+
Sbjct: 97 YEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIE 135
>gb|AAC52963.1| (U76759) nuclear protein NIP45 [Mus musculus]
Length = 412
Score = 32.3 bits (72), Expect = 0.84
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 24 YCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEID 140
Y + + + ++F FDG +L G++ P +L +E GD I+
Sbjct: 371 YEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIE 409
>dbj|BAB07590.1| (AP001520) Rieske [2Fe-2S] iron-sulfur protein [Bacillus
halodurans]
Length = 508
Score = 31.6 bits (70), Expect = 1.4
Identities = 13/42 (30%), Positives = 25/42 (58%)
Frame = +3
Query: 39 SVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQTGG 164
S +++ L DG+ +G +TP+ L+ +EGD ++ + GG
Sbjct: 406 SYNVDVAKHLIDGKTEKGSRTPESLQKDEGDVVNVNGKRAGG 447
>pir||G69130 conserved hypothetical protein MTH246 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB84752.1| (AE000811) twitching mobility (PilT) related protein
[Methanothermobacter thermautotrophicus]
Length = 610
Score = 30.8 bits (68), Expect = 2.4
Identities = 16/36 (44%), Positives = 21/36 (57%)
Frame = +3
Query: 51 NSIAFLFDGRRLRGEQTPDELEMEEGDEIDAMLHQT 158
N I+ +F GRR T DE+ + G EIDAM+ T
Sbjct: 67 NIISMIFVGRR----PTVDEISLSRGGEIDAMIRST 98
>dbj|BAB15721.1| (AK024431) FLJ00020 protein [Homo sapiens]
Length = 1142
Score = 30.4 bits (67), Expect = 3.2
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -2
Query: 204 PGCKQAPSKGEESTLRSGEAWRRSRRLPPSPAHQGSAHHGAYDHRKGKQWS*DPQTD 34
PG K A S +S++ S E S RLP P H+G H + W P+TD
Sbjct: 578 PGTKSAAS--HQSSMTSLEGSGISERLPQKPLHRGGGPH------LEETWMASPETD 626
>gb|AAK83024.1|AF286341_1 (AF286341) AT-hook protein AKNA [Homo sapiens]
Length = 633
Score = 30.4 bits (67), Expect = 3.2
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -2
Query: 204 PGCKQAPSKGEESTLRSGEAWRRSRRLPPSPAHQGSAHHGAYDHRKGKQWS*DPQTD 34
PG K A S +S++ S E S RLP P H+G H + W P+TD
Sbjct: 114 PGTKSAAS--HQSSMTSLEGSGISERLPQKPLHRGGGPH------LEETWMASPETD 162
>ref|XP_027013.1| AT-hook transcription factor AKNA [Homo sapiens]
Length = 950
Score = 30.4 bits (67), Expect = 3.2
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -2
Query: 204 PGCKQAPSKGEESTLRSGEAWRRSRRLPPSPAHQGSAHHGAYDHRKGKQWS*DPQTD 34
PG K A S +S++ S E S RLP P H+G H + W P+TD
Sbjct: 386 PGTKSAAS--HQSSMTSLEGSGISERLPQKPLHRGGGPH------LEETWMASPETD 434
>gb|AAC33294.2| (AF083440) collagen XVIII [Gallus gallus]
Length = 1344
Score = 29.6 bits (65), Expect = 5.4
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 81 RLRGEQTPDELEMEEGDEIDAMLHQTGGCFP 173
R+R E++PDE+E+EEG + + Q GG P
Sbjct: 178 RVRFERSPDEMELEEGSGL--FVAQAGGADP 206
>ref|NP_057288.1| growth differentiation factor 2; bone morphogenetic protein 9 [Homo
sapiens]
ref|XP_005880.1| growth differentiation factor 2 [Homo sapiens]
sp|Q9UK05|GDF2_HUMAN GROWTH/DIFFERENTIATION FACTOR 2 PRECURSOR (GDF-2) (BONE
MORPHOGENETIC PROTEIN 9) (BMP-9)
gb|AAD56960.1|AF188285_1 (AF188285) bone morphogenetic protein 9 [Homo sapiens]
Length = 429
Score = 29.6 bits (65), Expect = 5.4
Identities = 12/26 (46%), Positives = 19/26 (72%)
Frame = +1
Query: 37 SLWISTPLLSFSMVVGSVVSRPLMSW 114
+LW++ PLLS ++ GS+ +PL SW
Sbjct: 5 ALWVALPLLS--LLAGSLQGKPLQSW 28
>gb|AAK77711.1|AF369029_42 (AF369029) ORF42 [white spot syndrome virus]
Length = 1279
Score = 29.6 bits (65), Expect = 5.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 78 RRLRGEQTPDELEMEEGDEIDAMLHQTG 161
RRLRGE+ +E E EEG+E++ + G
Sbjct: 573 RRLRGEEEEEEEEEEEGEEMEEEEEEAG 600
>gb|AAF48904.1| (AE003510) CG7358 gene product [Drosophila melanogaster]
Length = 1150
Score = 29.6 bits (65), Expect = 5.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 195 KQAPSKGEESTLRSGEAWRRSRRLPPSPAHQGSAHHGAYDHRKGKQWS 52
++ P ++ + SG WR + PP+P+H A + H +G++ S
Sbjct: 636 REKPRGWQQQSSNSGGDWRDNDDAPPAPSHPHPASPHHHVHPRGERGS 683
>dbj|BAB24331.1| (AK005947) putative [Mus musculus]
Length = 416
Score = 29.3 bits (64), Expect = 7.1
Identities = 12/39 (30%), Positives = 22/39 (55%)
Frame = +3
Query: 24 YCDRQSVDLNSIAFLFDGRRLRGEQTPDELEMEEGDEID 140
Y + + + ++F FDG G++ P +L +E GD I+
Sbjct: 375 YEEAMGLSGHKLSFFFDGTNSSGKELPADLGLESGDLIE 413
>pir||T20269 hypothetical protein C56A3.8 - Caenorhabditis elegans
emb|CAB01138.1| (Z77655) cDNA EST yk65f2.3 comes from this gene~cDNA EST yk578a1.3
comes from this gene~cDNA EST yk578a1.5 comes from this
gene [Caenorhabditis elegans]
Length = 380
Score = 28.9 bits (63), Expect = 9.3
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +2
Query: 41 CGSQLHCFPFRWS*APW 91
C S+ FPFRWS PW
Sbjct: 227 CTSRFRSFPFRWSNLPW 243
>ref|XP_041583.1| similar to UBIQUITIN-LIKE PROTEIN SMT3B (SENTRIN 2) (H. sapiens)
[Homo sapiens]
Length = 126
Score = 28.9 bits (63), Expect = 9.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 21 AYCDRQSVDLNSIAFLFDGRRLR 89
AYC+RQ + + I F FDG+ ++
Sbjct: 46 AYCERQGLSMRQIRFRFDGQPMK 68
>ref|NP_014157.1| Apg2p [Saccharomyces cerevisiae]
sp|P53855|YNY2_YEAST HYPOTHETICAL 178.4 KD PROTEIN IN SLA2-ZWF1 INTERGENIC REGION
pir||S63208 hypothetical protein YNL242w - yeast (Saccharomyces cerevisiae)
emb|CAA93356.1| (Z69381) N1106 [Saccharomyces cerevisiae]
emb|CAA96147.1| (Z71518) ORF YNL242w [Saccharomyces cerevisiae]
Length = 1592
Score = 28.9 bits (63), Expect = 9.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 84 LRGEQTPDELEMEEGDEIDAMLHQTG 161
L GEQTP + + GDE+D ++ G
Sbjct: 430 LTGEQTPQSIALNMGDELDIIISHDG 455
Database: nr
Posted date: Sep 1, 2001 3:31 AM
Number of letters in database: 238,836,854
Number of sequences in database: 750,817
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,867,819
Number of Sequences: 750817
Number of extensions: 2749488
Number of successful extensions: 8648
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 8430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8645
length of database: 238,836,854
effective HSP length: 90
effective length of database: 171,263,324
effective search space used: 4110319776
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)