The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S2_1_B11_T7.seq Fgr-S2_1_B11_T7 0 0 0 1 470
(470 letters)
Database: nr
750,817 sequences; 238,836,854 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||T10800 cellulose synthase (EC 2.4.1.-) catalytic chain... 30 7.5
>pir||T10800 cellulose synthase (EC 2.4.1.-) catalytic chain celA2 - upland
cotton (fragment)
gb|AAB37767.1| (U58284) cellulose synthase [Gossypium hirsutum]
Length = 685
Score = 30.0 bits (66), Expect = 7.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 330 CSCGGGRHDSKEGKDEKGLHGGFV 401
C CGG R SK+ ++KGL GG +
Sbjct: 254 CCCGGSRKKSKKKGEKKGLLGGLL 277
Database: nr
Posted date: Sep 1, 2001 3:31 AM
Number of letters in database: 238,836,854
Number of sequences in database: 750,817
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,710,800
Number of Sequences: 750817
Number of extensions: 1177343
Number of successful extensions: 3619
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3613
length of database: 238,836,854
effective HSP length: 109
effective length of database: 156,997,801
effective search space used: 7378896647
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)