The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_A06_T7.seq Fgr-S3_1_A06_T7 LENGTH:654bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A06 ; CLONELIB: n/a
(654 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22288.1| (D85597) polyprotein [Oryza australiensis] 153 3e-42
ref|NP_192290.1| (NM_116619) putative retrotransposon prote... 154 5e-37
dbj|BAB89089.1| (AP003372) putative gag-pol polyprotein [Or... 72 1e-15
gb|AAD12998.1| (AF082134) pol polyprotein [Zea mays] 69 1e-14
gb|AAD12994.1| (AF082130) gag-pol polyprotein [Zea mays] 68 2e-14
pir||T17429 gag-pol polyprotein - maize copia-like retrotra... 67 3e-14
gb|AAM18738.1|AC092548_16 (AC092548) putative gag-pol polyp... 71 7e-14
ref|NP_179340.1| (NM_127303) putative retroelement pol poly... 69 5e-11
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein fro... 66 3e-10
dbj|BAB10837.1| (AB016892) retroelement pol polyprotein-lik... 65 7e-10
gb|AAK70633.1|AC091238_11 (AC091238) Putative gag-pol polyp... 65 7e-10
ref|NP_175303.1| (NM_103766) copia-type polyprotein, putati... 64 1e-09
ref|NP_191692.1| (NM_115997) copia-type polyprotein [Arabid... 64 2e-09
ref|NP_172593.1| (NM_100999) copia-type polyprotein [Arabid... 64 2e-09
ref|NP_176110.1| (NM_104595) copia-type polyprotein, putati... 64 2e-09
pir||T02206 hypothetical protein - common tobacco retrotran... 64 2e-09
gb|AAK70407.1|AF369930_2 (AF369930) pol polyprotein [Citrus... 63 3e-09
gb|AAM08562.1|AC092749_15 (AC092749) Putative retroelement ... 62 4e-09
gb|AAK12626.1| (AY009101) unknown protein [Aedes aegypti] 54 5e-09
ref|NP_192784.1| (NM_117114) putative retrotransposon [Arab... 62 6e-09
ref|NP_178761.1| (NM_126720) putative retroelement pol poly... 62 6e-09
ref|NP_191531.1| (NM_115834) copia-type reverse transcripta... 62 6e-09
ref|NP_189623.1| (NM_113903) Ty1/Copia-type retroelement po... 61 1e-08
gb|AAK29467.1| (AF279585) polyprotein-like [Lycopersicon ch... 61 1e-08
dbj|BAB01972.1| (AP002064) copia-like retrotransposable ele... 61 1e-08
ref|NP_190138.1| (NM_114421) copia-like polyprotein [Arabid... 60 2e-08
gb|AAL56548.1|AF387862_2 (AF387862) pol polyprotein [Anophe... 53 2e-08
ref|NP_189172.1| (NM_113441) hypothetical protein [Arabidop... 59 3e-08
gb|AAL75752.1|AC037197_10 (AC037197) Putative copia-type po... 59 4e-08
ref|NP_179741.1| (NM_127718) putative retroelement pol poly... 59 5e-08
ref|NP_179167.1| (NM_127126) putative retroelement pol poly... 58 6e-08
ref|NP_193867.1| (NM_118256) putative transposable element ... 58 8e-08
pir||S05465 retrovirus-related polyprotein - Arabidopsis th... 58 8e-08
ref|NP_179198.1| (NM_127158) putative retroelement pol poly... 57 1e-07
pir||T14517 hypothetical protein 1 - wild cabbage transposo... 57 1e-07
dbj|BAA97287.1| (AB018120) retroelement pol polyprotein-lik... 57 1e-07
gb|AAC12735.1| (AF053721) putative retrovirus-related polyp... 57 1e-07
ref|NP_178718.1| (NM_126677) putative retroelement pol poly... 57 1e-07
ref|NP_179187.1| (NM_127147) putative retroelement pol poly... 56 2e-07
gb|AAL55241.1|AF295693_1 (AF295693) polyprotein [Anopheles ... 49 2e-07
gb|AAF63110.1|AC006423_11 (AC006423) putative retroelement ... 56 3e-07
ref|NP_179010.1| (NM_126966) putative retroelement pol poly... 56 3e-07
dbj|BAB02990.1| (AP000736) retroelement pol polyprotein-lik... 55 4e-07
ref|NP_174900.1| (NM_103363) polyprotein, putative [Arabido... 55 5e-07
ref|NP_192347.1| (NM_116676) putative polyprotein [Arabidop... 55 5e-07
gb|AAF25964.2|AC017118_1 (AC017118) F6N18.1 [Arabidopsis th... 55 7e-07
ref|NP_174537.1| (NM_102994) copia-type polyprotein, putati... 55 7e-07
dbj|BAB11200.1| (AB022213) copia-type polyprotein [Arabidop... 55 7e-07
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana r... 55 7e-07
ref|NP_191576.1| (NM_115880) putative protein [Arabidopsis ... 55 7e-07
gb|AAK52561.1|AC079853_14 (AC079853) Putative retroelement ... 54 9e-07
dbj|BAB68043.1| (AP003453) putative copia-type polyprotein ... 54 9e-07
ref|NP_178653.1| (NM_126609) putative retroelement pol poly... 54 9e-07
gb|AAC64917.1| (AF053008) gag-pol polyprotein [Glycine max] 54 1e-06
gb|AAF79879.1|AC000348_32 (AC000348) T7N9.5 [Arabidopsis th... 54 2e-06
ref|NP_174020.1| (NM_102462) polyprotein, putative; This ge... 54 2e-06
pir||S00954 pol polyprotein - fruit fly (Drosophila melanog... 53 2e-06
gb|AAK50412.1|AC021891_13 (AC021891) Putative retroelement ... 53 2e-06
ref|NP_179011.1| (NM_126967) putative retroelement pol poly... 53 3e-06
gb|AAL31093.1|AC091749_22 (AC091749) putative retrotranspos... 52 4e-06
ref|NP_178851.1| (NM_126810) putative retroelement pol poly... 52 4e-06
gb|AAK09230.1|AC084320_17 (AC084320) putative copia-like re... 52 4e-06
dbj|BAA01703.1| (D10880) ORF [Drosophila simulans] 52 5e-06
sp|P04146|COPI_DROME Copia protein [Contains: Copia VLP pro... 52 5e-06
ref|NP_176060.1| (NM_104544) hypothetical protein [Arabidop... 52 5e-06
ref|NP_176077.1| (NM_104561) polyprotein, putative [Arabido... 52 5e-06
dbj|BAB10743.1| (AB010695) retroelement pol polyprotein-lik... 52 5e-06
prf||1107279B ORF g [Drosophila sp.] 52 5e-06
emb|CAA26447.1| (X02600) unidentified open reading frame I ... 52 5e-06
ref|NP_177159.1| (NM_105670) hypothetical protein [Arabidop... 52 6e-06
ref|NP_179636.1| (NM_127605) putative retroelement pol poly... 52 6e-06
pir||T49111 hypothetical retrovirus-related pol polyprotein... 52 6e-06
ref|NP_193935.1| (NM_118325) LTR retrotransposon like prote... 52 6e-06
gb|AAM23251.1|AC092553_17 (AC092553) Putative pol polyprote... 51 8e-06
gb|AAD20307.1| (AF090447) copia-type pol polyprotein [Zea m... 51 8e-06
dbj|BAA92406.1| (AP001366) Similar to Arabidopsis thaliana ... 51 8e-06
pir||T01160 hypothetical protein F7N22.6 - Arabidopsis thal... 51 1e-05
gb|AAL75759.1|AC069324_3 (AC069324) Putative pol polyprotei... 51 1e-05
gb|AAK51235.1|AF287471_1 (AF287471) polyprotein [Arabidopsi... 51 1e-05
gb|AAM22635.1|AF434192_2 (AF434192) Gag and Pol [Zea mays] 51 1e-05
dbj|BAA74713.1| (AB014676) copia-like retrotransposable ele... 48 1e-05
gb|AAK13113.1|AC080019_5 (AC080019) Putative retroelement p... 50 1e-05
ref|NP_178712.1| (NM_126671) putative retroelement pol poly... 50 1e-05
dbj|BAB21132.1| (AP002872) putative gag/pol polyprotein [Or... 50 1e-05
ref|NP_194619.1| (NM_119034) putative protein [Arabidopsis ... 50 2e-05
pir||S23313 hypothetical protein 1 - Arabidopsis thaliana r... 50 2e-05
ref|NP_085498.1| (NC_001284) orf145a [Arabidopsis thaliana]... 50 2e-05
gb|AAK38381.1|AC079028_5 (AC079028) polyprotein, putative [... 50 2e-05
emb|CAD27357.1| (X04456) hypothetical protein [Drosophila m... 50 2e-05
gb|AAL76004.1|AF466646_12 (AF466646) putative gag-pol polyp... 50 2e-05
ref|NP_180042.1| (NM_128027) putative retroelement pol poly... 50 2e-05
ref|NP_175784.1| (NM_104258) hypothetical protein [Arabidop... 49 3e-05
dbj|BAB90027.1| (AP003335) hypothetical protein~similar to ... 49 3e-05
dbj|BAA88170.1| (AP000836) Similar to Oryza australiensis r... 49 3e-05
ref|NP_179914.1| (NM_127897) putative retroelement pol poly... 49 4e-05
ref|NP_173613.1| (NM_102043) polyprotein, putative [Arabido... 49 4e-05
gb|AAF16534.1|AC013482_8 (AC013482) T26F17.17 [Arabidopsis ... 49 4e-05
ref|NP_179727.1| (NM_127703) putative retroelement pol poly... 49 5e-05
gb|AAK26118.1|AC084406_1 (AC084406) putative gag-pol polypr... 49 5e-05
pir||S32437 pol polyprotein - Volvox carteri f. nagariensis... 49 5e-05
ref|NP_174874.1| (NM_103337) Ty1/copia-element polyprotein ... 48 7e-05
pir||T02087 gag/pol polyprotein - maize retrotransposon Hop... 48 7e-05
dbj|BAB10503.1| (AB013391) retroelement pol polyprotein-lik... 48 7e-05
ref|NP_192526.1| (NM_116856) putative transposon protein [A... 37 7e-05
ref|NP_179258.1| (NM_127219) putative retroelement pol poly... 48 9e-05
dbj|BAB89929.1| (AP003309) putative gag/pol polyprotein [Or... 48 9e-05
gb|AAL31082.1|AC091749_11 (AC091749) putative polyprotein [... 48 9e-05
ref|NP_175169.1| (NM_103630) polyprotein, putative [Arabido... 47 1e-04
ref|NP_189711.1| (NM_113991) hypothetical protein [Arabidop... 47 1e-04
ref|NP_174406.1| (NM_102859) putative reverse transcriptase... 47 1e-04
gb|AAG10812.1|AC018460_6 (AC018460) Putative retroelement p... 47 1e-04
gb|AAM08523.1|AC068654_25 (AC068654) Putative retroelement ... 47 1e-04
gb|AAK52148.1|AC084831_2 (AC084831) putative gag-pol polypr... 47 1e-04
dbj|BAB90690.1| (AP004225) putative polyprotein [Oryza sati... 47 1e-04
gb|AAK84454.1|AC087192_15 (AC087192) putative polyprotein [... 47 1e-04
gb|AAK71544.1|AC087852_4 (AC087852) putative polyprotein [O... 47 1e-04
dbj|BAB44137.1| (AP003144) putative retrovirus-related pol ... 47 1e-04
dbj|BAB89240.1| (AP004231) putative polyprotein from transp... 47 1e-04
dbj|BAB40018.1| (AP003021) putative retrovirus-related pol ... 47 1e-04
gb|AAK50117.1|AC087797_2 (AC087797) putative gag-pol polypr... 47 1e-04
gb|AAD09018.1| (AF090446) polyprotein [Zea mays] 47 2e-04
emb|CAC37623.1| (AJ293575) copia-like polyprotein [Arabidop... 47 2e-04
gb|AAK53850.1|AC016781_4 (AC016781) Putative retroelement [... 47 2e-04
gb|AAK72274.1|AC084767_14 (AC084767) putative polyprotein [... 47 2e-04
dbj|BAB07955.1| (AP002524) putative retrovirous-related pol... 47 2e-04
gb|AAK00427.2|AC069324_13 (AC069324) Putative copia-type po... 47 2e-04
pir||T04112 pol protein homolog - maize retrotransposon Opi... 47 2e-04
ref|NP_179172.1| (NM_127132) copia-like retroelement pol po... 46 3e-04
gb|AAK70631.1|AC091238_9 (AC091238) Putative copia-type pol... 46 3e-04
dbj|BAB21127.1| (AP002872) putative retrotransposon RIRE1 p... 46 3e-04
pir||T04760 hypothetical protein T16H5.150 - Arabidopsis th... 46 3e-04
ref|NP_193714.1| (NM_118099) putative LTR retrotransposon [... 46 3e-04
ref|NP_176436.1| (NM_104926) hypothetical protein [Arabidop... 46 3e-04
gb|AAL79695.1|AC087599_14 (AC087599) putative gag-pol polyp... 46 3e-04
ref|NP_179099.1| (NM_127057) putative retroelement pol poly... 41 4e-04
gb|AAL35396.1| (AF391808) Opie2a pol [Zea mays] 45 4e-04
ref|NP_192369.1| (NM_116698) putative polyprotein [Arabidop... 45 6e-04
gb|AAM08642.1|AC108883_15 (AC108883) Putative copia-type po... 45 6e-04
gb|AAK73108.1|AF391808_10 (AF391808) Fourf gag/pol protein ... 45 6e-04
gb|AAM22705.1|AC098693_10 (AC098693) Putative gag-pol polyp... 45 6e-04
ref|NP_176154.1| (NM_104638) polyprotein, putative [Arabido... 45 7e-04
ref|NP_176146.1| (NM_104630) polyprotein, putative [Arabido... 45 7e-04
dbj|BAA78423.1| (AB021263) polyprotein [Arabidopsis thaliana] 45 7e-04
dbj|BAA87949.1| (AB028223) retrotransposon homolog [Arabido... 45 7e-04
gb|AAL58228.1|AC084762_2 (AC084762) putative gag-pol polypr... 45 7e-04
dbj|BAB03384.1| (AP002538) Similar to Zea mays retrotranspo... 45 7e-04
dbj|BAA81872.1| (AB026295) EST D24315(R1718) corresponds to... 44 0.001
dbj|BAA88542.1| (AP000969) ESTs D22114(C10364), AU076106(E2... 44 0.001
ref|NP_178752.1| (NM_126711) putative retroelement pol poly... 44 0.001
gb|AAM19019.1|AC084748_9 (AC084748) putative polyprotein [O... 44 0.001
gb|AAL25185.1|AC079852_18 (AC079852) Putative polyprotein [... 44 0.001
gb|AAL68851.1|AF466199_10 (AF466199) putative copia polypro... 44 0.001
gb|AAF79683.1|AC022314_24 (AC022314) F9C16.17 [Arabidopsis ... 44 0.001
gb|AAL68641.1|AF458765_1 (AF458765) polyprotein [Oryza sati... 44 0.001
gb|AAM08852.1|AC113337_16 (AC113337) Putative retroelement ... 44 0.001
dbj|BAB02146.1| (AP000411) copia retroelement pol polyprote... 44 0.001
gb|AAG52949.1| (AY016208) gag/pol polyprotein [Arabidopsis ... 44 0.001
gb|AAK13102.1|AC078839_18 (AC078839) Similar to Zea mays ch... 44 0.001
gb|AAL75486.1|AF466202_12 (AF466202) putative Fourf gag/pol... 44 0.002
gb|AAK13130.1|AC083945_5 (AC083945) Putative gag-pol polypr... 44 0.002
gb|AAG13538.1|AC023240_11 (AC023240) putative gag-pol polyp... 44 0.002
ref|NP_198431.1| (NM_122973) copia-like retrotransposable e... 44 0.002
dbj|BAB63714.1| (AP003289) putative gag/pol polyprotein [Or... 44 0.002
ref|NP_192807.1| (NM_117137) retrotransposon like protein [... 43 0.002
gb|AAL31653.1|AC079179_8 (AC079179) Putative polyprotein fr... 43 0.002
pir||T01908 hypothetical protein T12H20.12 - Arabidopsis th... 43 0.002
ref|NP_178785.1| (NM_126744) hypothetical protein [Arabidop... 43 0.003
emb|CAA69272.1| (Y08010) lectin receptor kinase [Arabidopsi... 43 0.003
gb|AAF79427.1|AC025808_9 (AC025808) F18O14.19 [Arabidopsis ... 43 0.003
gb|AAG60200.1|AC084763_20 (AC084763) putative gag-pol polyp... 43 0.003
ref|NP_178607.1| (NM_126562) putative retroelement pol poly... 43 0.003
dbj|BAB90546.1| (AP003791) putative rice retrotransposon re... 42 0.004
dbj|BAB90615.1| (AP003902) putative gag-pol polyprotein [Or... 42 0.004
pir||T10728 probable gag/pol polyprotein - long-staminate r... 42 0.004
ref|NP_178887.1| (NM_126846) putative retroelement pol poly... 42 0.005
ref|NP_175090.1| (NM_103550) polyprotein, putative [Arabido... 42 0.006
gb|AAL79738.1|AC096687_2 (AC096687) putative polyprotein [O... 42 0.006
gb|AAF67366.1| (AF262041) Hypothetical protein T32B20.i [Ar... 42 0.006
gb|AAF79665.1|AC022314_6 (AC022314) F9C16.13 [Arabidopsis t... 42 0.006
dbj|BAA88175.1| (AP000836) Similar to putative polyprotein ... 42 0.006
ref|NP_175055.1| (NM_103515) polyprotein, putative [Arabido... 42 0.006
gb|AAD43604.1|AC005698_3 (AC005698) T3P18.3 [Arabidopsis th... 40 0.014
gb|AAL83348.1|AC074282_15 (AC074282) Putative gag-pol polyp... 40 0.014
gb|AAM08718.1|AC116601_11 (AC116601) Putative gag-pol polyp... 40 0.014
gb|AAL31045.1|AC078893_8 (AC078893) putative polyprotein [O... 40 0.014
gb|AAK50413.1|AC021891_14 (AC021891) Putative retroelement ... 40 0.014
gb|AAF20282.1| (AF116598) gag-pol polyprotein [Vitis vinifera] 40 0.014
dbj|BAA95819.1| (AP002069) Similar to Zea mays chromosome 4... 40 0.018
gb|AAF67380.1| (AF262042) Hypothetical protein T15F17.l [Ar... 40 0.018
ref|NP_192205.1| (NM_116530) putative polyprotein of LTR tr... 40 0.024
gb|AAM01150.1|AC113336_2 (AC113336) Putative retroelement [... 40 0.024
dbj|BAA78427.1| (AB021267) polyprotein [Arabidopsis thaliana] 40 0.024
dbj|BAA78425.1| (AB021265) polyprotein [Arabidopsis thaliana] 40 0.024
dbj|BAA78424.1| (AB021264) polyprotein [Arabidopsis thaliana] 40 0.024
gb|AAK91878.1|AC091665_4 (AC091665) Putative copia-type pol... 40 0.024
dbj|BAA78426.1| (AB021266) polyprotein [Arabidopsis thaliana] 40 0.024
gb|AAK82436.1|AC091247_3 (AC091247) putative polyprotein [O... 40 0.024
ref|NP_189592.1| (NM_113872) hypothetical protein [Arabidop... 39 0.031
gb|AAM08751.1|AC025098_18 (AC025098) Putative copia-type po... 39 0.031
gb|AAG13591.2|AC051633_7 (AC051633) putative gag/pol polypr... 39 0.031
dbj|BAA97087.1| (AP002459) copia-type pol polyprotein-like ... 39 0.031
gb|AAF69161.1|AC007915_13 (AC007915) F27F5.19 [Arabidopsis ... 39 0.031
ref|NP_189595.1| (NM_113875) transposon related protein [Ar... 39 0.031
gb|AAF97299.1|AC007843_2 (AC007843) Similar to copia-type r... 39 0.053
gb|AAC24836.2| (AF065434) polyprotein [Candida albicans] 39 0.053
gb|AAF79483.1|AC022492_27 (AC022492) F1L3.20 [Arabidopsis t... 39 0.053
gb|AAL31661.1|AC079179_16 (AC079179) Putative copia-type po... 39 0.053
dbj|BAB89058.1| (AP003290) putative retrotransposon polypro... 38 0.090
dbj|BAA96887.1| (AB018112) copia-like retroelement pol poly... 38 0.090
gb|AAM10746.1|AF492702_2 (AF492702) pol protein [Saccharomy... 37 0.12
gb|AAK52163.1|AC084831_17 (AC084831) putative polyprotein [... 37 0.15
ref|NP_193419.1| (NM_117789) retrotransposon like protein [... 37 0.20
emb|CAD29538.1| (AJ439552) polyprotein [Debaryomyces hansen... 37 0.20
ref|NP_193182.1| (NM_117525) retrovirus-related like polypr... 37 0.20
gb|AAK92587.1|AC074354_21 (AC074354) Putative retroelement ... 37 0.20
gb|AAD17359.1| (AF128395) contains similarity to retrovirus... 37 0.20
pir||T31353 polyprotein - Arabidopsis arenosa Evelknievel r... 36 0.26
gb|AAC02666.1| (AF039372) polyprotein [Arabidopsis thaliana] 36 0.26
gb|AAC02664.1| (AF039371) polyprotein [Arabidopsis thaliana] 36 0.26
gb|AAC02669.1| (AF039373) polyprotein [Arabidopsis thaliana] 36 0.26
pir||E71436 hypothetical protein - Arabidopsis thaliana 36 0.34
dbj|BAB11371.1| (AB017068) contains similarity to retroelem... 36 0.34
emb|CAD29539.1| (AJ439553) polyprotein [Pichia angusta] 36 0.34
gb|AAL67593.1|AC018929_15 (AC018929) putative copia polypro... 36 0.34
gb|AAL66760.1|AF464738_11 (AF464738) putative gag protein [... 36 0.34
gb|AAL58143.1|AC093093_16 (AC093093) putative polyprotein [... 35 0.44
gb|AAK02025.2|AC074283_6 (AC074283) Putative copia-type pol... 35 0.44
emb|CAD29543.1| (AJ439560) polyprotein [Saccharomyces exiguus] 35 0.44
emb|CAD29540.1| (AJ439554) polyprotein [Saccharomyces exiguus] 35 0.58
gb|AAF79369.1|AC007887_28 (AC007887) F15O4.39 [Arabidopsis ... 35 0.76
pir||S25786 hypothetical protein 3 - potato transposon Tst1... 34 0.99
ref|NP_176210.1| (NM_104694) polyprotein, putative [Arabido... 33 1.7
ref|NP_175183.1| (NM_103645) polyprotein, putative [Arabido... 33 1.7
emb|CAA54706.1| (X77616) fusolin [unidentified entomopoxvirus] 33 2.2
gb|AAF69172.1|AC007915_24 (AC007915) F27F5.11 [Arabidopsis ... 33 2.2
gb|AAF99727.1|AC004557_6 (AC004557) F17L21.7 [Arabidopsis t... 33 2.9
ref|NP_174048.1| (NM_102490) putative polyprotein [Arabidop... 33 2.9
gb|AAL66753.1|AF464738_4 (AF464738) putative copia-type pol... 33 2.9
ref|NP_473022.1| (NC_000910) hypothetical protein [Plasmodi... 32 3.8
pir||I51693 XPolycomb - African clawed frog >gi|1086556|gb|... 32 3.8
dbj|BAB10876.1| (AB010693) polyprotein [Arabidopsis thaliana] 32 3.8
gb|AAD39270.1|AC007203_2 (AC007203) Similar to reverse tran... 32 3.8
gb|AAG10817.1|AC011808_5 (AC011808) Putative retroelement p... 32 3.8
dbj|BAA90383.1| (AP001081) Similar to putative copia polypr... 32 4.9
emb|CAA92372.1| (Z68196) unknown [Saccharomyces cerevisiae] 32 6.4
emb|CAA55998.1| (X79489) B-1346 protein; Ty B [Saccharomyce... 32 6.4
pir||S56253 TyB protein - yeast (Saccharomyces cerevisiae) ... 32 6.4
ref|NP_058138.1| (NC_001136) TyB Gag-Pol protein; Ydr034c-d... 32 6.4
ref|NP_009909.2| (NC_001135) TyB Gag-Pol protein; Ycl019wp ... 32 6.4
pir||S69966 TyB protein - yeast (Saccharomyces cerevisiae) ... 32 6.4
>dbj|BAA22288.1| (D85597) polyprotein [Oryza australiensis]
Length = 1317
Score = 153 bits (387), Expect(2) = 3e-42
Identities = 74/144 (51%), Positives = 98/144 (67%), Gaps = 1/144 (0%)
Frame = -1
Query: 474 NCCSVYMNKTLYGYTPNENGSLDLDHSDTHIHNIETKRCKVNNDSATYLWHCRLGHIGVK 295
N CS+Y+ Y + P NG L+ + I+NI T+R N+ + T++WHCRLGHI K
Sbjct: 391 NGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNINTERQLSNDINPTFIWHCRLGHINKK 450
Query: 294 RMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLLEIIHTDVCDPMSVD 115
RM+KLHKDG S +ESF+ CE CLLGKMTK PF+ E A+DLL ++HTDVC PMS
Sbjct: 451 RMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSST 510
Query: 114 ARGKYRYFLTFTR*FEQI-WVYLL 46
ARG Y+YF+TFT F + ++YL+
Sbjct: 511 ARGGYQYFITFTDDFSRYGYIYLM 534
Score = 40.0 bits (92), Expect(2) = 3e-42
Identities = 23/40 (57%), Positives = 26/40 (64%), Gaps = 1/40 (2%)
Frame = -3
Query: 601 LHTPYLSGLVLKLNKCYLVFALSMNMIS-SCLLQYGYSFK 485
LH P SGLVL+LN CY V L N+IS SCL GY F+
Sbjct: 350 LHLP--SGLVLELNNCYCVPTLCQNVISASCLQAEGYDFR 387
Score = 37.4 bits (85), Expect = 0.12
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSE 27
DD SRYGYIYLM+HKSE
Sbjct: 523 DDFSRYGYIYLMRHKSE 539
>ref|NP_192290.1| (NM_116619) putative retrotransposon protein [Arabidopsis thaliana]
pir||T01860 reverse transcriptase homolog T7M24.7 - Arabidopsis thaliana
gb|AAC26250.1| (AF077408) contains similarity to reverse transcriptase (Pfam:
rvt.hmm, score 19.29) [Arabidopsis thaliana]
emb|CAB80804.1| (AL161498) putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 154 bits (390), Expect = 5e-37
Identities = 78/150 (52%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Frame = -1
Query: 492 HLSKRINCCSVYMNKTLYGYTPNENGSLDLDHSDTHIHNIETKRCKVNNDSATYLWHCRL 313
H S + CCS + YG P +NG L+ S I+NI TK+ K N+ + T+LWHCRL
Sbjct: 30 HFSIKNKCCSFDRDDMFYGSAPLDNGLHVLNQS-MPIYNIRTKKFKSNDLNPTFLWHCRL 88
Query: 312 GHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLLEIIHTDVC 133
GHI K ++KLH DG S YES++ CE CLLGKMTK PF+ E A+DLL +IHTDVC
Sbjct: 89 GHINEKHIQKLHSDGLLNSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGLIHTDVC 148
Query: 132 DPMSVDARGKYRYFLTFTR*FEQI-WVYLL 46
PMS ARG Y+YF+TFT F + +VYL+
Sbjct: 149 GPMSTSARGNYQYFITFTDDFSRYGYVYLM 178
Score = 36.6 bits (83), Expect = 0.20
Identities = 14/17 (82%), Positives = 16/17 (93%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSE 27
DD SRYGY+YLMKHKS+
Sbjct: 167 DDFSRYGYVYLMKHKSK 183
>dbj|BAB89089.1| (AP003372) putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1397
Score = 72.4 bits (176), Expect(2) = 1e-15
Identities = 37/98 (37%), Positives = 55/98 (55%)
Frame = -1
Query: 372 ETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTP 193
E K+ K D ++ LWHCRLGHI R+++L K+ L + + C C+ GK K+
Sbjct: 436 ENKKRKRTPDVSSKLWHCRLGHISRGRIERLVKNEILPPLEFSDLEQCIECIKGKFVKS- 494
Query: 192 FSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFT 79
+ + + +LEIIHTD+C P V + Y F+TFT
Sbjct: 495 IKKGAKRSAGILEIIHTDICGPFPVKSVDGYDSFITFT 532
Score = 32.0 bits (71), Expect(2) = 1e-15
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSEIVD 18
DD SRYGYIY +K +SE +D
Sbjct: 533 DDYSRYGYIYPIKERSEALD 552
>gb|AAD12998.1| (AF082134) pol polyprotein [Zea mays]
Length = 998
Score = 68.9 bits (167), Expect(2) = 1e-14
Identities = 37/109 (33%), Positives = 57/109 (51%)
Frame = -1
Query: 405 LDHSDTHIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACE 226
LD + N KR + + ++++ LWH RLGHI R++ L K+ L + + C
Sbjct: 14 LDIPENDPANSGRKRKRSDGETSSKLWHYRLGHISRGRIESLVKEQILHPLDFTDLEQCR 73
Query: 225 PCLLGKMTKTPFSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFT 79
C+ GK K + + +T +LEIIHTD+C P V + F+TFT
Sbjct: 74 DCIKGKFAK-QIKKDAKHSTRVLEIIHTDICGPFPVRTVDGFNSFITFT 121
Score = 32.0 bits (71), Expect(2) = 1e-14
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSEIVD 18
DD SRYGYIY +K +SE +D
Sbjct: 122 DDYSRYGYIYPIKERSEALD 141
>gb|AAD12994.1| (AF082130) gag-pol polyprotein [Zea mays]
Length = 595
Score = 67.8 bits (164), Expect(2) = 2e-14
Identities = 34/96 (35%), Positives = 53/96 (54%)
Frame = -1
Query: 366 KRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFS 187
KR + + ++++ LWH RLGHI R++ L K+ L + + C C+ GK K
Sbjct: 435 KRKRSDGETSSKLWHYRLGHISRGRIESLVKEQILHPLDFTDLEQCRDCIKGKFAK-QIK 493
Query: 186 RIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFT 79
+ + +T +LEIIHTD+C P V + F+TFT
Sbjct: 494 KDAKHSTRVLEIIHTDICGPFPVRTVDGFNSFITFT 529
Score = 32.0 bits (71), Expect(2) = 2e-14
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSEIVD 18
DD SRYGYIY +K +SE +D
Sbjct: 530 DDYSRYGYIYPIKERSEALD 549
>pir||T17429 gag-pol polyprotein - maize copia-like retrotransposon Sto-4
gb|AAD12997.1| (AF082133) gag-pol polyprotein [Zea mays]
Length = 1406
Score = 67.4 bits (163), Expect(2) = 3e-14
Identities = 34/96 (35%), Positives = 53/96 (54%)
Frame = -1
Query: 366 KRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFS 187
KR + + ++++ LWH RLGHI R++ L K+ L + + C C+ GK K
Sbjct: 435 KRKRSDGETSSKLWHYRLGHISRGRIESLVKEQILHPLDFTDLEQCRGCIKGKFAK-QIK 493
Query: 186 RIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFT 79
+ + +T +LEIIHTD+C P V + F+TFT
Sbjct: 494 KDAKHSTRVLEIIHTDICGPFPVRTVDGFNSFITFT 529
Score = 32.0 bits (71), Expect(2) = 3e-14
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSEIVD 18
DD SRYGYIY +K +SE +D
Sbjct: 530 DDYSRYGYIYPIKERSEALD 549
>gb|AAM18738.1|AC092548_16 (AC092548) putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1787
Score = 71.2 bits (173), Expect(2) = 7e-14
Identities = 37/98 (37%), Positives = 55/98 (55%)
Frame = -1
Query: 372 ETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTP 193
E K+ K D ++ LWHCRLGHI R+++L K+ L + + C C+ GK K+
Sbjct: 319 ENKKRKRTPDVSSKLWHCRLGHISRGRIERLVKNEILPPLEFSDLEQCIECIKGKFVKS- 377
Query: 192 FSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFT 79
+ + +T +LEIIHTD+C V + Y F+TFT
Sbjct: 378 IKKGAKRSTGILEIIHTDICGSFPVKSVDGYDSFITFT 415
Score = 26.9 bits (58), Expect(2) = 7e-14
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSEIVD 18
D RYGYIY +K +SE +D
Sbjct: 416 DHYFRYGYIYPIKERSEALD 435
>ref|NP_179340.1| (NM_127303) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD32906.1| (AC007584) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 822
Score = 68.6 bits (166), Expect = 5e-11
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Frame = -1
Query: 447 TLYGYTPNENGSLDLDHSDTHIHNIETKR-CKVNNDSATYLWHCRLGHIGVKRMKKLHKD 271
T++ + G +++ + H+ + + V D AT LWH RLGH G +K L
Sbjct: 119 TIHDSARKKIGEVEMVNKSFHLRWLSNEETAMVAKDEATELWHKRLGHTGHSNLKILQSK 178
Query: 270 GFSESLGYESFDA--CEPCLLGKMTKTPFSRIME*-ATDLLEIIHTDVCDPMSVDARGKY 100
L + + CE C+L K ++ PF + E A LE+IH+DVC PM +
Sbjct: 179 EMVTGLPKFNVEEGKCESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPMQNSSINGS 238
Query: 99 RYFLTF----TR*FEQIWVYLL 46
RY LTF TR +WVY L
Sbjct: 239 RYILTFIDDATR---MVWVYFL 257
>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Contains: Protease ; Reverse transcriptase ;
Endonuclease]
pir||S04273 retrovirus-related reverse transcriptase homolog - common tobacco
retrotransposon copia-like
emb|CAA32025.1| (X13777) ORF [Nicotiana tabacum]
Length = 1328
Score = 65.9 bits (159), Expect = 3e-10
Identities = 31/96 (32%), Positives = 53/96 (54%), Gaps = 1/96 (1%)
Frame = -1
Query: 330 LWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLLEI 151
LWH R+GH+ K ++ L K + C+ CL GK + F E ++L++
Sbjct: 424 LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDL 483
Query: 150 IHTDVCDPMSVDARGKYRYFLTF-TR*FEQIWVYLL 46
+++DVC PM +++ G +YF+TF ++WVY+L
Sbjct: 484 VYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYIL 519
>dbj|BAB10837.1| (AB016892) retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 64.7 bits (156), Expect = 7e-10
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = -1
Query: 372 ETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDA--CEPCLLGKMTK 199
ET DS++ LWHCRLGH K +K L FS+S G+ +FD+ CE C+ K T+
Sbjct: 456 ETVASMTRMDSSSQLWHCRLGHPSSKVLKLL---SFSDSTGH-AFDSKTCEICIKAKQTR 511
Query: 198 TPFSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLL 46
PF + E++H D+ P + YFLT + + +W+YLL
Sbjct: 512 DPFPLSNNKTSSPFEMVHCDLWGPYRTTSICGSNYFLTLVDNYTRAVWLYLL 563
>gb|AAK70633.1|AC091238_11 (AC091238) Putative gag-pol polyprotein [Oryza sativa]
Length = 1225
Score = 64.7 bits (156), Expect = 7e-10
Identities = 39/116 (33%), Positives = 62/116 (52%), Gaps = 3/116 (2%)
Frame = -1
Query: 378 NIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDA--CEPCLLGKM 205
NI TKR +N + + LWH RLGHI R+++L K+ L + D C C+ GK
Sbjct: 449 NISTKRKHNDNKTFSKLWHYRLGHISRGRIERLIKENILYPLDFSDADVVHCIDCIKGKY 508
Query: 204 TKTPFSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQI-WVYLLDE 40
+K + + +LEIIHTD+C P + + + F+TFT + + ++Y + E
Sbjct: 509 SK-QIKKGANRSMGVLEIIHTDICGPFNEKSVDGFDSFITFTNDYSRYGYIYPIKE 563
>ref|NP_175303.1| (NM_103766) copia-type polyprotein, putative [Arabidopsis thaliana]
gb|AAG60117.1|AC073555_1 (AC073555) copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 63.9 bits (154), Expect = 1e-09
Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Frame = -1
Query: 387 HIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESF--DACEPCLL 214
+I N + K+ ++LWH R GH+ ++ L + L + CE CLL
Sbjct: 448 NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLL 507
Query: 213 GKMTKTPFSR-IME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLLDE 40
GK K F + A LE+IHTDVC P+ + GK YFL F F + WVY L E
Sbjct: 508 GKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKE 567
>ref|NP_191692.1| (NM_115997) copia-type polyprotein [Arabidopsis thaliana]
pir||T47925 copia-type polyprotein - Arabidopsis thaliana
emb|CAB71063.1| (AL137898) copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 63.5 bits (153), Expect = 2e-09
Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Frame = -1
Query: 387 HIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESF--DACEPCLL 214
+I N + K+ ++LWH R GH+ ++ L + L + CE CLL
Sbjct: 448 NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLL 507
Query: 213 GKMTKTPFSR-IME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLLDE 40
GK K F + A LE+IHTDVC P+ + GK YFL F F + WVY L E
Sbjct: 508 GKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKE 567
>ref|NP_172593.1| (NM_100999) copia-type polyprotein [Arabidopsis thaliana]
gb|AAD50001.1|AC007259_14 (AC007259) Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 63.5 bits (153), Expect = 2e-09
Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Frame = -1
Query: 387 HIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESF--DACEPCLL 214
+I N + K+ ++LWH R GH+ ++ L + L + CE CLL
Sbjct: 448 NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLL 507
Query: 213 GKMTKTPFSR-IME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLLDE 40
GK K F + A LE+IHTDVC P+ + GK YFL F F + WVY L E
Sbjct: 508 GKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKE 567
>ref|NP_176110.1| (NM_104595) copia-type polyprotein, putative [Arabidopsis thaliana]
gb|AAG50698.1|AC079604_5 (AC079604) copia-type polyprotein, putative [Arabidopsis thaliana]
gb|AAG50765.1|AC079131_10 (AC079131) copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 63.5 bits (153), Expect = 2e-09
Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Frame = -1
Query: 387 HIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESF--DACEPCLL 214
+I N + K+ ++LWH R GH+ ++ L + L + CE CLL
Sbjct: 448 NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLL 507
Query: 213 GKMTKTPFSR-IME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLLDE 40
GK K F + A LE+IHTDVC P+ + GK YFL F F + WVY L E
Sbjct: 508 GKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKE 567
>pir||T02206 hypothetical protein - common tobacco retrotransposon Tto1
dbj|BAA11674.1| (D83003) ORF(AA 1-1338) [Nicotiana tabacum]
Length = 1338
Score = 63.5 bits (153), Expect = 2e-09
Identities = 38/103 (36%), Positives = 50/103 (47%), Gaps = 2/103 (1%)
Frame = -1
Query: 348 NDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRI-ME* 172
NDS LWH RLGH+ K M +L K L C CL GK + F R
Sbjct: 416 NDSNIKLWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNRVSFKRFPPSR 475
Query: 171 ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLL 46
++L+++H+DVC P + G RYF+TF + WVY L
Sbjct: 476 RQNVLDLVHSDVCGPFK-KSLGGARYFVTFIDDHSRKTWVYTL 517
>gb|AAK70407.1|AF369930_2 (AF369930) pol polyprotein [Citrus x paradisi]
Length = 701
Score = 62.8 bits (151), Expect = 3e-09
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 12/111 (10%)
Frame = -1
Query: 378 NIETKRCKVNND--SATYL------WHCRLGHIGVKRMKKL----HKDGFSESLGYESFD 235
N+ T + +NN S+ YL WH RLGH+ ++KL H F L ++
Sbjct: 437 NVMTLKPTINNKATSSAYLLESSNIWHGRLGHVNFNSLRKLINMKHIPNFQIDLKHK--- 493
Query: 234 ACEPCLLGKMTKTPFSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTF 82
C+ C+ K+T++ F +I++ ++ L++IH+D+CD S+ RG +YF+TF
Sbjct: 494 -CKTCVEAKLTRSSF-QIIQRNSEPLDLIHSDICDFKSIQTRGGNKYFITF 542
>gb|AAM08562.1|AC092749_15 (AC092749) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
gb|AAM10749.1|AC112514_2 (AC112514) Putative retroelement [Oryza sativa]
Length = 1225
Score = 62.0 bits (149), Expect = 4e-09
Identities = 32/116 (27%), Positives = 54/116 (45%), Gaps = 1/116 (0%)
Frame = -1
Query: 390 THIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLG 211
T + N+ ++N AT LWH RLGH+ + +L K G + + CE C+ G
Sbjct: 376 TILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFG 435
Query: 210 KMTKTPFSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLL 46
K + F+ +L+ +H+D+ P + G RY +T + ++W Y L
Sbjct: 436 KHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFL 491
>gb|AAK12626.1| (AY009101) unknown protein [Aedes aegypti]
Length = 1298
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 29/92 (31%), Positives = 49/92 (52%), Gaps = 4/92 (4%)
Frame = -1
Query: 351 NNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFD---ACEPCLLGKMTKTPFSRI 181
++++ +LWH RLGH ++++K+ + + CE CL GK + PF I
Sbjct: 404 HHENCQHLWHRRLGHRDWAAAERINKEELATGMKVGDCGLRLVCECCLDGKAARAPFPSI 463
Query: 180 ME*-ATDLLEIIHTDVCDPMSVDARGKYRYFL 88
+E +T +L+IIHTD+C PM R+ +
Sbjct: 464 VERKSTRILDIIHTDLCGPMKTTTPSGNRFVM 495
Score = 27.3 bits (59), Expect(2) = 5e-09
Identities = 11/17 (64%), Positives = 13/17 (75%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSE 27
DD SR+ YL+KHKSE
Sbjct: 499 DDYSRFTVTYLLKHKSE 515
>ref|NP_192784.1| (NM_117114) putative retrotransposon [Arabidopsis thaliana]
pir||T04181 hypothetical protein F7L13.40 - Arabidopsis thaliana
emb|CAB40039.1| (AL049524) putative retrotransposon [Arabidopsis thaliana]
emb|CAB78169.1| (AL161517) putative retrotransposon [Arabidopsis thaliana]
Length = 1230
Score = 61.6 bits (148), Expect = 6e-09
Identities = 39/114 (34%), Positives = 56/114 (48%), Gaps = 2/114 (1%)
Frame = -1
Query: 381 HNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMT 202
H++ +R ND T LWH RLGHI K M L K G+ + + CE C+ GK
Sbjct: 411 HSMTVER---RNDD-TVLWHRRLGHISQKNMDILVKKGYLDGKKVSKLELCEDCIYGKAR 466
Query: 201 KTPFSRIME*ATDLLEIIHTDVCDPMSVD-ARGKYRYFLTFTR*F-EQIWVYLL 46
+ F D L +H+D+ SV + GK +YF++F + + WVY L
Sbjct: 467 RLSFVVATHNTEDKLNYVHSDLWGAPSVPLSLGKCQYFISFIDVYSRKTWVYFL 520
>ref|NP_178761.1| (NM_126720) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD32759.1| (AC007662) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1356
Score = 61.6 bits (148), Expect = 6e-09
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = -1
Query: 336 TYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLL 157
T LWH RL H+ K M+ L + GF + S D CE C+ GK + FS + L
Sbjct: 438 TVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFSLAHHDTKEKL 497
Query: 156 EIIHTDVCD-PMSVDARGKYRYFLTFTR*F-EQIWVYLL 46
E IH+D+ P + GK +YF++ F ++WVY +
Sbjct: 498 EYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFM 536
>ref|NP_191531.1| (NM_115834) copia-type reverse transcriptase-like protein
[Arabidopsis thaliana]
pir||T49313 copia-type reverse transcriptase-like protein - Arabidopsis
thaliana
emb|CAB75469.1| (AL138659) copia-type reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1272
Score = 61.6 bits (148), Expect = 6e-09
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = -1
Query: 387 HIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESF--DACEPCLL 214
+I N + K+ ++LWH R GH+ ++ L + L + CE CLL
Sbjct: 448 NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLL 507
Query: 213 GKMTKTPFSR-IME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLLDE 40
G K F + A LE+IHTDVC P+ + GK YFL F F + WVY L E
Sbjct: 508 GNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKE 567
>ref|NP_189623.1| (NM_113903) Ty1/Copia-type retroelement polyprotein [Arabidopsis
thaliana]
Length = 1348
Score = 60.8 bits (146), Expect = 1e-08
Identities = 38/113 (33%), Positives = 57/113 (49%), Gaps = 4/113 (3%)
Frame = -1
Query: 372 ETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLG-YESFDA-CEPCLLGKMTK 199
ET + T LWH R GH+ +++ + E L +E C C +GK ++
Sbjct: 442 ETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGICAACEMGKQSR 501
Query: 198 TPFSRIME*ATD-LLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQI-WVYLL 46
F + + T+ LE+IH+DVC PM ++ RYFLTF F ++ WVY L
Sbjct: 502 RSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFL 554
>gb|AAK29467.1| (AF279585) polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 60.8 bits (146), Expect = 1e-08
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = -1
Query: 351 NNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME* 172
+ +++ LWH R+GH K ++ L K + C L GK + F E
Sbjct: 418 HEENSADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGKQHRVSFQTSSER 477
Query: 171 ATDLLEIIHTDVCDPMSVDARGKYRYFLTF-TR*FEQIWVYL 49
+++L+++++DVC PM +++ G +YF+TF ++WVY+
Sbjct: 478 KSNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYI 519
>dbj|BAB01972.1| (AP002064) copia-like retrotransposable element [Arabidopsis
thaliana]
Length = 1499
Score = 60.8 bits (146), Expect = 1e-08
Identities = 38/113 (33%), Positives = 57/113 (49%), Gaps = 4/113 (3%)
Frame = -1
Query: 372 ETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLG-YESFDA-CEPCLLGKMTK 199
ET + T LWH R GH+ +++ + E L +E C C +GK ++
Sbjct: 442 ETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGICAACEMGKQSR 501
Query: 198 TPFSRIME*ATD-LLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQI-WVYLL 46
F + + T+ LE+IH+DVC PM ++ RYFLTF F ++ WVY L
Sbjct: 502 RSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFL 554
>ref|NP_190138.1| (NM_114421) copia-like polyprotein [Arabidopsis thaliana]
pir||T47492 copia-like polyprotein - Arabidopsis thaliana
emb|CAB75481.1| (AL138657) copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 60.1 bits (144), Expect = 2e-08
Identities = 35/106 (33%), Positives = 53/106 (49%), Gaps = 2/106 (1%)
Frame = -1
Query: 357 KVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIM 178
+ N+D T LWH RL H+ K M L K GF + D CE C+ G+ K F+
Sbjct: 440 RANDD--TVLWHRRLCHMSQKNMSLLIKKGFLDKKKVSMLDTCEDCIYGRAKKIGFNLAQ 497
Query: 177 E*ATDLLEIIHTDVCDPMSVD-ARGKYRYFLTFTR*F-EQIWVYLL 46
LE +H+D+ +V + G +YF++F + ++WVY L
Sbjct: 498 HDTKKKLEYVHSDLWGAPTVPMSLGNCQYFISFIDDYTRKVWVYFL 543
>gb|AAL56548.1|AF387862_2 (AF387862) pol polyprotein [Anopheles gambiae]
Length = 942
Score = 53.1 bits (126), Expect(2) = 2e-08
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Frame = -1
Query: 309 HIGVKRMKKLHKDGFSESLGYES---FDACEPCLLGKMTKTPFSRIME*ATD-LLEIIHT 142
H ++++ ++G ++ + + F CE C+ GK+ + PF I E T +L+++HT
Sbjct: 20 HRDPNAIQRVAREGLAKGISIKKCDIFQTCECCVEGKIARKPFPPITERQTTRVLDLVHT 79
Query: 141 DVCDPMSVDARGKYRYFLT 85
D+C PM+ G RYFLT
Sbjct: 80 DICGPMNTVTSGGSRYFLT 98
Score = 26.6 bits (57), Expect(2) = 2e-08
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSEIVDL 15
DD SRY +Y +K KSE ++
Sbjct: 101 DDFSRYTTVYFLKRKSEAAEV 121
>ref|NP_189172.1| (NM_113441) hypothetical protein [Arabidopsis thaliana]
Length = 1343
Score = 59.3 bits (142), Expect = 3e-08
Identities = 38/119 (31%), Positives = 58/119 (47%), Gaps = 7/119 (5%)
Frame = -1
Query: 375 IETKRC-KVNNDSATYLWHCRLGHIGVKRMKKLHKD----GFSESLGYESFDACEPCLLG 211
+E +C ++ + + +WH RLGHI + +K + K G S S+ E + C CL G
Sbjct: 408 VENSKCLQLTTTNESTIWHARLGHISFETIKAMIKKELVIGISSSVPQEK-ETCGSCLFG 466
Query: 210 KMTKTPFSRIME*-ATDLLEIIHTDVCDPMSVDARGKYRY-FLTFTR*FEQIWVYLLDE 40
K + F + A +LE+IH D+C P+S K RY F+ +W LL E
Sbjct: 467 KQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLIDDHSRYMWSILLKE 525
>gb|AAL75752.1|AC037197_10 (AC037197) Putative copia-type polyprotein [Oryza sativa]
Length = 1350
Score = 58.9 bits (141), Expect = 4e-08
Identities = 34/101 (33%), Positives = 51/101 (49%), Gaps = 4/101 (3%)
Frame = -1
Query: 330 LWHCRLGHIGVKRMKKLHKDGFSESLGYESF--DACEPCLLGKMTKTPFSRI-ME*ATDL 160
LWH R+GH+ + +K L G + L + + D CE C+ GK + F A+
Sbjct: 380 LWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAP 439
Query: 159 LEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLLDE 40
LE++HTD+ + + G YF+TF + IWVY L E
Sbjct: 440 LELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKE 480
>ref|NP_179741.1| (NM_127718) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD23690.1| (AC006841) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1333
Score = 58.5 bits (140), Expect = 5e-08
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = -1
Query: 354 VNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME 175
V T LWH RLGH+ K M L K G + + CE C+ GK + F+
Sbjct: 410 VKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAKRIGFNLAQH 469
Query: 174 *ATDLLEIIHTDVCDPMSVD-ARGKYRYFLTF 82
+ LE +H+D+ SV + GK +YF++F
Sbjct: 470 DTREKLEYVHSDLWGAPSVPFSLGKCQYFISF 501
>ref|NP_179167.1| (NM_127126) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD17409.1| (AC006248) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1347
Score = 58.2 bits (139), Expect = 6e-08
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Frame = -1
Query: 327 WHCRLGHIGVKRMKKLHKDGFSESLGYESF--DACEPCLLGKMTKTPFSRIME*AT-DLL 157
WH RLGH+ KR++++ L + C+ C LGK ++ F + + T + L
Sbjct: 456 WHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGKQSRKSFPKESQTKTREKL 515
Query: 156 EIIHTDVCDPMSVDARGKYRYFLTFTR*FEQI-WVYLLDE 40
EI+HTDVC PM + RY++ F + + WVY L +
Sbjct: 516 EIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQ 555
>ref|NP_193867.1| (NM_118256) putative transposable element [Arabidopsis thaliana]
pir||T05178 hypothetical protein T6K22.90 - Arabidopsis thaliana
emb|CAA20201.1| (AL031187) putative transposable element [Arabidopsis thaliana]
emb|CAB79135.1| (AL161554) putative transposable element [Arabidopsis thaliana]
Length = 1308
Score = 57.8 bits (138), Expect = 8e-08
Identities = 28/83 (33%), Positives = 42/83 (49%), Gaps = 1/83 (1%)
Frame = -1
Query: 381 HNIETKRCKVN-NDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKM 205
H + + C V ++ T LWHCRLGH+ + MK L + G E + CE C++GK
Sbjct: 422 HTVVNENCNVEGSNEKTELWHCRLGHMSLNNMKILAEKGLLEKKDIKELSFCENCVMGKS 481
Query: 204 TKTPFSRIME*ATDLLEIIHTDV 136
K F+ ++L IH D+
Sbjct: 482 KKLSFNVGKHITDEVLGYIHADL 504
>pir||S05465 retrovirus-related polyprotein - Arabidopsis thaliana
retrotransposon Ta1-3
emb|CAA31653.1| (X13291) polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 57.8 bits (138), Expect = 8e-08
Identities = 38/108 (35%), Positives = 53/108 (48%), Gaps = 8/108 (7%)
Frame = -1
Query: 336 TYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLL 157
T LWH RLGHIG+ MK L G D CE C++GK K F+ + D+L
Sbjct: 447 TELWHSRLGHIGLNNMKVLAGKGLVSKEEIRVLDFCENCVMGKAKKVSFNVGKHNSEDVL 506
Query: 156 EIIHTDVCDPMSV-DARGKYRYFLTF----TR*FEQIWVYLL---DET 37
+H D+ +V + +YFL+ TR ++W+Y L DET
Sbjct: 507 RYVHADLWGSTNVTPSLSGNKYFLSIIDDKTR---KVWLYFLRSKDET 551
>ref|NP_179198.1| (NM_127158) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD26943.1| (AC007134) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1454
Score = 57.4 bits (137), Expect = 1e-07
Identities = 34/101 (33%), Positives = 50/101 (48%), Gaps = 6/101 (5%)
Frame = -1
Query: 330 LWHCRLGHIGVKRMKKLHKDGFSESLGY-----ESFDACEPCLLGKMTKTPFSRIME*AT 166
+WH RLGH ++R+ D S+SLG + D C C L K K F +
Sbjct: 557 MWHRRLGHASLQRL-----DAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCK 611
Query: 165 DLLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLL 46
++ +++H DV P SV+ Y+YFLT + W+YLL
Sbjct: 612 EIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLL 652
>pir||T14517 hypothetical protein 1 - wild cabbage transposon Melmoth
emb|CAA72989.1| (Y12321) open reading frame 1 [Brassica oleracea]
Length = 1131
Score = 57.4 bits (137), Expect = 1e-07
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Frame = -1
Query: 396 SDTHIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESF----DA- 232
++ ++ ++++ K+N LWH RLGH R+ K+ SE+LG DA
Sbjct: 495 ANLYVLDVKSSPMKINAVVDISLWHKRLGHPSYTRLDKI-----SEALGTTKHKNKGDAH 549
Query: 231 CEPCLLGKMTKTPFSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWV 55
C C L K K +S T +++H DV P SV+ Y+YFLT + W+
Sbjct: 550 CHVCHLAKQKKLSYSSQNHICTASFQLLHVDVWGPFSVETLEGYKYFLTIVDDHSRATWI 609
Query: 54 YLL 46
YLL
Sbjct: 610 YLL 612
>dbj|BAA97287.1| (AB018120) retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 57.4 bits (137), Expect = 1e-07
Identities = 50/164 (30%), Positives = 71/164 (42%), Gaps = 12/164 (7%)
Frame = -1
Query: 501 TVIHLSKRINCCSVY----------MNKTLYGYTPNENGSLDL-DHSDTHIHNIETKRCK 355
+V L K+I C +++ ++TL G +G L D + T +H ++
Sbjct: 451 SVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLTDAATTTVHKVD----- 505
Query: 354 VNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME 175
V D A LWH RLGH + L FS S S +C+ C K T+ F
Sbjct: 506 VTTDHA--LWHQRLGHPSFSVLSSLPL--FSGSSCSVSSRSCDVCFRAKQTREVFPDSSN 561
Query: 174 *ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLL 46
+TD +IH DV P V + YFLT F + +W YLL
Sbjct: 562 KSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLL 605
>gb|AAC12735.1| (AF053721) putative retrovirus-related polyprotein [Lithospermum
erythrorhizon]
Length = 244
Score = 57.0 bits (136), Expect = 1e-07
Identities = 29/98 (29%), Positives = 49/98 (49%), Gaps = 1/98 (1%)
Frame = -1
Query: 336 TYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLL 157
T +WH RLGH+ K + L G +++ + CE + GK + F + LL
Sbjct: 108 TMIWHMRLGHMSEKGLSLLSGQGLLKNMKKSCMEFCEHWVYGKTHRLKFFTSKHKSRGLL 167
Query: 156 EIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLL 46
+ +HTD+ P V+++ YF+TF + + W+Y L
Sbjct: 168 DYVHTDLWGPAKVNSKDGSWYFVTFVDDYSRYAWIYFL 205
Score = 33.9 bits (76), Expect = 1.3
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSEIVDL 15
DD SRY +IY +KHK+E+ D+
Sbjct: 194 DDYSRYAWIYFLKHKNEVFDI 214
>ref|NP_178718.1| (NM_126677) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAC67205.1| (AC005171) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1413
Score = 57.0 bits (136), Expect = 1e-07
Identities = 49/164 (29%), Positives = 71/164 (42%), Gaps = 12/164 (7%)
Frame = -1
Query: 501 TVIHLSKRINCCSVY----------MNKTLYGYTPNENGSLDL-DHSDTHIHNIETKRCK 355
+V L K+I C +++ ++TL G +G L D + T +H ++
Sbjct: 451 SVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLTDAATTTVHKVD----- 505
Query: 354 VNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME 175
+ D A LWH RLGH + L FS S S +C+ C K T+ F
Sbjct: 506 ITTDHA--LWHQRLGHPSFSVLSSLPL--FSGSSCSVSSRSCDVCFRAKQTREVFPDSSN 561
Query: 174 *ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLL 46
+TD +IH DV P V + YFLT F + +W YLL
Sbjct: 562 KSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLL 605
>ref|NP_179187.1| (NM_127147) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD41979.1| (AC006438) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1264
Score = 56.2 bits (134), Expect = 2e-07
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Frame = -1
Query: 396 SDTHIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGY-----ESFDA 232
++ ++ ++E VN WH RL H ++R+ D SESLG + D
Sbjct: 394 ANLYVMDVEDTNVSVNAVVDISTWHNRLRHASLQRL-----DVISESLGTTKHKNKGSDY 448
Query: 231 CEPCLLGKMTKTPFSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWV 55
C C L K K F ++ E++H D+ P SV+ Y+YFLT + W+
Sbjct: 449 CHVCHLAKHRKLSFPSQNNVCNEIFEMLHIDIWGPFSVETVDGYQYFLTIVDDHSRATWI 508
Query: 54 YLL 46
YLL
Sbjct: 509 YLL 511
>gb|AAL55241.1|AF295693_1 (AF295693) polyprotein [Anopheles gambiae]
Length = 786
Score = 48.5 bits (114), Expect(2) = 2e-07
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Frame = -1
Query: 357 KVNNDSATYLWHCRLGHIG---VKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFS 187
K + + + WH RL H + MK+ + + + CE C+ KM ++PF
Sbjct: 269 KEHTKNCQHTWHHRLEHRDPAVIGEMKRRDLVSWLKVVDCGIRWTCECCIECKMARSPFP 328
Query: 186 RIM-E*ATDLLEIIHTDVCDPMSVDARGKYRYFLT 85
+ + +T++L+IIH+DVC PM G RY++T
Sbjct: 329 PVAGKTSTEVLDIIHSDVCGPMEETTLGGCRYYMT 363
Score = 27.3 bits (59), Expect(2) = 2e-07
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 77 DDLSRYGYIYLMKHKSEIVD 18
DD SRY ++Y +K KSE D
Sbjct: 366 DDHSRYTFVYFLKKKSEAED 385
>gb|AAF63110.1|AC006423_11 (AC006423) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1150
Score = 55.8 bits (133), Expect = 3e-07
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Frame = -1
Query: 396 SDTHIHNIE-----TKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSE--SLGYESF 238
S H++ + R + S + WH RLGH+ +K + + + SLG
Sbjct: 281 SKNHLYKVRMGIKGATRLHLTTISESSRWHARLGHVNFDTIKSMMQKELVQGFSLGSIKK 340
Query: 237 DACEPCLLGKMTKTPFSR-IME*ATDLLEIIHTDVCDPMSVDARGKYRY-FLTFTR*FEQ 64
+ C CLLGK T+ F + + A +LE++H D+C P++ RY F+
Sbjct: 341 ELCSSCLLGKQTRLAFPKATLFRAAKILELVHGDLCGPITPSTAAGNRYVFVLIDDHSRY 400
Query: 63 IWVYLLDE 40
+W LL E
Sbjct: 401 MWTILLKE 408
>ref|NP_179010.1| (NM_126966) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD19773.1| (AC006528) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1335
Score = 55.8 bits (133), Expect = 3e-07
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = -1
Query: 336 TYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLL 157
T LWH RLGH+ K M+ L K G + + CE C+ GK + F+ + L
Sbjct: 414 TALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFAPAQHVTKEKL 473
Query: 156 EIIHTDVC-DPMSVDARGKYRYFLTFTR*F-EQIWVYLL 46
+H+D+ P + + G +YF++F + ++W+Y L
Sbjct: 474 AYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFL 512
>dbj|BAB02990.1| (AP000736) retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1250
Score = 55.5 bits (132), Expect = 4e-07
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Frame = -1
Query: 327 WHCRLGHIGVKRMKKLHKDGFSESLGYESFD--ACEPCLLGKMTKTPFSRIME-*ATDLL 157
WH RLGHIGV+ +K + K + D C CLLGK F + AT L
Sbjct: 371 WHSRLGHIGVETLKTMVKKDLVIGMPQMEVDKETCASCLLGKQVSKSFPQASSYRATQNL 430
Query: 156 EIIHTDVCDPMSVDARGKYRY-FLTFTR*FEQIWVYLLDE 40
E+IH D+C P++ + RY F+ +W LL E
Sbjct: 431 ELIHGDLCGPITPPTSARNRYIFVLIDDHSRYMWSILLKE 470
>ref|NP_174900.1| (NM_103363) polyprotein, putative [Arabidopsis thaliana]
gb|AAF19226.1|AC007505_2 (AC007505) Highly similar to Ta1-3 polyprotein [Arabidopsis
thaliana]
Length = 1356
Score = 55.1 bits (131), Expect = 5e-07
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Frame = -1
Query: 420 NGSLDLDHSD--THIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGY 247
NG LD S + + N ET + K T LWH RLGH+ + +K L G +
Sbjct: 413 NGLYVLDGSTVMSELCNAETDKVK------TALWHSRLGHMSMNNLKVLAGKGLIDRKEI 466
Query: 246 ESFDACEPCLLGKMTKTPFSRIME*ATDLLEIIHTDVCDPMSV--DARGKYRYFLTFTR* 73
+ CE C++GK K F+ + D L +H D+ +V GK +
Sbjct: 467 NELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDK 526
Query: 72 FEQIWVYLL---DET 37
++W+Y L DET
Sbjct: 527 TRKVWLYFLKSKDET 541
>ref|NP_192347.1| (NM_116676) putative polyprotein [Arabidopsis thaliana]
gb|AAD36943.1|AF069441_3 (AF069441) putative polyprotein [Arabidopsis thaliana]
emb|CAB77906.1| (AL161500) putative polyprotein [Arabidopsis thaliana]
Length = 778
Score = 55.1 bits (131), Expect = 5e-07
Identities = 33/93 (35%), Positives = 44/93 (46%), Gaps = 1/93 (1%)
Frame = -1
Query: 357 KVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIM 178
K N+D LWH RL H+ K M L K GF + D CE C+ GK K F+
Sbjct: 323 KANDDIV--LWHRRLCHMSQKNMSLLVKKGFLDKKKVSMLDTCEDCIYGKAKKIGFNFAQ 380
Query: 177 E*ATDLLEIIHTDVCD-PMSVDARGKYRYFLTF 82
+ LE +H D+ P A G +YF++F
Sbjct: 381 HDTKEKLEYVHYDLWGAPTMPMALGNCQYFISF 413
>gb|AAF25964.2|AC017118_1 (AC017118) F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 54.7 bits (130), Expect = 7e-07
Identities = 35/119 (29%), Positives = 55/119 (45%), Gaps = 8/119 (6%)
Frame = -1
Query: 372 ETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFD------ACEPCLLG 211
E RC A +WH R GH+ + ++ L + + G FD C+ CL G
Sbjct: 325 EETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVK--GLPKFDLGEEEAVCDICLKG 382
Query: 210 KMTKTPFSRIME*-ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLLDE 40
K + + +T +L+++HTD+C P++ + RY L F F + W YLL E
Sbjct: 383 KQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSE 441
>ref|NP_174537.1| (NM_102994) copia-type polyprotein, putative [Arabidopsis thaliana]
gb|AAG51247.1|AC055769_6 (AC055769) copia-type polyprotein, putative; 28768-32772
[Arabidopsis thaliana]
Length = 1334
Score = 54.7 bits (130), Expect = 7e-07
Identities = 35/119 (29%), Positives = 55/119 (45%), Gaps = 8/119 (6%)
Frame = -1
Query: 372 ETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFD------ACEPCLLG 211
E RC A +WH R GH+ + ++ L + + G FD C+ CL G
Sbjct: 420 EETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVK--GLPKFDLGEEEAVCDICLKG 477
Query: 210 KMTKTPFSRIME*-ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLLDE 40
K + + +T +L+++HTD+C P++ + RY L F F + W YLL E
Sbjct: 478 KQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSE 536
>dbj|BAB11200.1| (AB022213) copia-type polyprotein [Arabidopsis thaliana]
emb|CAC37622.1| (AJ292423) polyprotein [Arabidopsis thaliana]
Length = 1334
Score = 54.7 bits (130), Expect = 7e-07
Identities = 35/119 (29%), Positives = 55/119 (45%), Gaps = 8/119 (6%)
Frame = -1
Query: 372 ETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFD------ACEPCLLG 211
E RC A +WH R GH+ + ++ L + + G FD C+ CL G
Sbjct: 420 EETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVK--GLPKFDLGEEEAVCDICLKG 477
Query: 210 KMTKTPFSRIME*-ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLLDE 40
K + + +T +L+++HTD+C P++ + RY L F F + W YLL E
Sbjct: 478 KQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSE 536
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment)
emb|CAA37924.1| (X53976) orf 2 [Arabidopsis thaliana]
Length = 1084
Score = 54.7 bits (130), Expect = 7e-07
Identities = 36/108 (33%), Positives = 52/108 (47%), Gaps = 8/108 (7%)
Frame = -1
Query: 336 TYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLL 157
T LWH RLGH+G+ MK L G D CE C++GK K F+ + +L
Sbjct: 347 TELWHSRLGHMGLNNMKVLAGKGLVSKEEIRELDFCENCVMGKAKKVSFNMGKHNSEYVL 406
Query: 156 EIIHTDVCDPMSV-DARGKYRYFLTF----TR*FEQIWVYLL---DET 37
+H D+ +V + +YFL+ TR ++W+Y L DET
Sbjct: 407 SYVHADLWGSTNVTPSLSGNKYFLSIIDDKTR---KVWLYFLRSKDET 451
>ref|NP_191576.1| (NM_115880) putative protein [Arabidopsis thaliana]
pir||T47841 hypothetical protein T2O9.150 - Arabidopsis thaliana
emb|CAB75932.1| (AL138658) putative protein [Arabidopsis thaliana]
Length = 1339
Score = 54.7 bits (130), Expect = 7e-07
Identities = 32/106 (30%), Positives = 53/106 (49%), Gaps = 4/106 (3%)
Frame = -1
Query: 345 DSATYLWHCRLGHIGVKRMKKL--HKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME- 175
D +LWHCR GH+ + +K L K + + + C CL GK + S+
Sbjct: 430 DKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATKEICAICLTGKQHRESMSKKTSW 489
Query: 174 *ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLLDE 40
++ L+++H+D+C P++ + RY L+F F + WVY L E
Sbjct: 490 KSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHE 535
>gb|AAK52561.1|AC079853_14 (AC079853) Putative retroelement pol polyprotein [Oryza sativa]
Length = 1326
Score = 54.3 bits (129), Expect = 9e-07
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -1
Query: 336 TYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLL 157
T LWH RLGH+ M +L K + CE C+ GK + F+ + +L
Sbjct: 426 TNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRVKFNTSVHRTKGIL 485
Query: 156 EIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLL 46
+ +HTD+ P G RY LT + ++W Y L
Sbjct: 486 DYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFL 523
>dbj|BAB68043.1| (AP003453) putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
dbj|BAB89833.1| (AP003288) putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1433
Score = 54.3 bits (129), Expect = 9e-07
Identities = 30/104 (28%), Positives = 49/104 (46%), Gaps = 4/104 (3%)
Frame = -1
Query: 345 DSATYLWHCRLGHIGVKRMKKLHKDGFSESLG--YESFDACEPCLLGKMTKTPFSRIME- 175
D +LWH RLGH+ + MK L + + C+ CL+ K + PF
Sbjct: 491 DDPAWLWHARLGHVNFQAMKLLVDKEMAGGVPAIVHPNQLCQSCLVAKQARAPFPAAAHF 550
Query: 174 *ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLL 46
A + LE++H D+C P++ RYF + + +WV++L
Sbjct: 551 RAEEPLELLHIDLCGPITPSTMSGNRYFFLIVDDYSRWMWVFVL 594
>ref|NP_178653.1| (NM_126609) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAC95173.1| (AC005970) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1200
Score = 54.3 bits (129), Expect = 9e-07
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Frame = -1
Query: 327 WHCRLGHIGVKRMKKLHKDGFSESL--GYESFDACEPCLLGKMTKTPFSRIME*-ATDLL 157
WH RLGHI ++ +K + F + + + C C+LGK + F + A+ +L
Sbjct: 390 WHARLGHINLETIKAMVTKEFVIGIPSAPKEKEICASCMLGKQARQVFPKATTYRASQIL 449
Query: 156 EIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLLDE 40
E+IH D+C P+S K RY L + +W +LL E
Sbjct: 450 ELIHGDLCGPISPPTAAKRRYILVLIDDHSRFMWSFLLKE 489
>gb|AAC64917.1| (AF053008) gag-pol polyprotein [Glycine max]
Length = 1550
Score = 53.9 bits (128), Expect = 1e-06
Identities = 32/112 (28%), Positives = 52/112 (45%), Gaps = 5/112 (4%)
Frame = -1
Query: 360 CKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSE---SLGYESFDACEPCLLGKMTKTPF 190
C + + +WH R GH+ ++ MKK+ G +L E C C +GK K
Sbjct: 655 CLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSN 714
Query: 189 SRIME*ATD-LLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQI-WVYLLDE 40
++ T +LE++H D+ PM V++ G+ RY F + WV + E
Sbjct: 715 QKLQHQTTSRVLELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFTWVNFIRE 766
>gb|AAF79879.1|AC000348_32 (AC000348) T7N9.5 [Arabidopsis thaliana]
Length = 1436
Score = 53.5 bits (127), Expect = 2e-06
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Frame = -1
Query: 411 LDLDHSDTHIHNIETKRCKVNNDSATYLWHCRLGHIGVKRM-----------KKLHKDGF 265
L+LD S + + K + + + +WH RLGH ++ +K++KD
Sbjct: 530 LNLDKSLVDVSSFPGKSVCSSVKNESEMWHKRLGHPSFAKIDTLSDVLMLPKQKINKDS- 588
Query: 264 SESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLT 85
C C L K PF + E++H D P SV YRYFLT
Sbjct: 589 ---------SHCHVCHLSKQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDSYRYFLT 639
Query: 84 FTR*FEQ-IWVYLLDE 40
F + W+YLL +
Sbjct: 640 IVDDFSRATWIYLLKQ 655
>ref|NP_174020.1| (NM_102462) polyprotein, putative; This gene structure is
inaccurate, likely due to discrepancies within
overlapping bac sequences. This will be resolved asap.
In the meantime, an either full or partial translation
is provided. [Arabidopsis thaliana]
Length = 1425
Score = 53.5 bits (127), Expect = 2e-06
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Frame = -1
Query: 411 LDLDHSDTHIHNIETKRCKVNNDSATYLWHCRLGHIGVKRM-----------KKLHKDGF 265
L+LD S + + K + + + +WH RLGH ++ +K++KD
Sbjct: 519 LNLDKSLVDVSSFPGKSVCSSVKNESEMWHKRLGHPSFAKIDTLSDVLMLPKQKINKDS- 577
Query: 264 SESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLLEIIHTDVCDPMSVDARGKYRYFLT 85
C C L K PF + E++H D P SV YRYFLT
Sbjct: 578 ---------SHCHVCHLSKQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDSYRYFLT 628
Query: 84 FTR*FEQ-IWVYLLDE 40
F + W+YLL +
Sbjct: 629 IVDDFSRATWIYLLKQ 644
>pir||S00954 pol polyprotein - fruit fly (Drosophila melanogaster) transposon
1731
emb|CAA30503.1| (X07656) pol polypeptide (AA 1-982) [Drosophila melanogaster]
Length = 982
Score = 53.1 bits (126), Expect = 2e-06
Identities = 29/97 (29%), Positives = 50/97 (50%), Gaps = 4/97 (4%)
Frame = -1
Query: 360 CKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFS---ESLGYESFDACEPCLLGKMTKTPF 190
C D+ LWH R GH+ ++++ + E + ++ C+ C+L K+ PF
Sbjct: 128 CFAAVDADGSLWHKRNGHLNTSSLQEMVRKKMVYGVEKVVFKPDAVCKTCMLAKIHVQPF 187
Query: 189 SRIME*-ATDLLEIIHTDVCDPMSVDARGKYRYFLTF 82
+ A +LL++IH+D+C P S + +YFLTF
Sbjct: 188 PKTTRSRAEELLDMIHSDLCGPFSTPSLAGSKYFLTF 224
>gb|AAK50412.1|AC021891_13 (AC021891) Putative retroelement [Oryza sativa]
Length = 1217
Score = 53.1 bits (126), Expect = 2e-06
Identities = 27/104 (25%), Positives = 50/104 (47%), Gaps = 4/104 (3%)
Frame = -1
Query: 345 DSATYLWHCRLGHIGVKRMKKLHKDGFSESLG--YESFDACEPCLLGKMTKTPFSRIME* 172
D+ +LWH R+GH+ +K L + + + C+ CL+ K + PF +
Sbjct: 480 DNPAWLWHARIGHVNFHALKLLVDKEMASGVPTVHHPNQLCQACLVAKQVRQPFPGMANY 539
Query: 171 ATDL-LEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLL 46
+ LE++H D+C P++ RYF+ F +WV+++
Sbjct: 540 RAEAPLELLHMDLCGPITPSTFAGNRYFMLIVDDFSNWMWVFVI 583
>ref|NP_179011.1| (NM_126967) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD19784.1| (AC006528) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1501
Score = 52.8 bits (125), Expect = 3e-06
Identities = 43/140 (30%), Positives = 58/140 (40%), Gaps = 2/140 (1%)
Frame = -1
Query: 453 NKTLYGYTPNENGSLDL-DHSDTHIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLH 277
+KTL G G L D + IH N DS LWH RLGH + L
Sbjct: 494 SKTLIGSGEERGGVYYLTDVTPAKIHT-------ANVDSDQALWHQRLGHPSFSVLSSLP 546
Query: 276 KDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLLEIIHTDVCDPMSVDARGKYR 97
FS++ + +C+ C K T+ F + + +IH DV P V A
Sbjct: 547 L--FSKTSSTVTSHSCDVCFRAKQTREVFPESINKTEECFSLIHCDVWGPYRVPASCGAV 604
Query: 96 YFLTFTR*FEQ-IWVYLLDE 40
YFLT + + +W YLL E
Sbjct: 605 YFLTIVDDYSRAVWTYLLLE 624
>gb|AAL31093.1|AC091749_22 (AC091749) putative retrotransposon-related protein [Oryza sativa]
Length = 1229
Score = 52.4 bits (124), Expect = 4e-06
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = -1
Query: 342 SATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATD 163
S T LWH RLGH+ M +L K + + CE C+ GK + F+ +
Sbjct: 421 SKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKG 480
Query: 162 LLEIIHTDVCDPMSVDARGKYRYFLTFTR*F-EQIWVYLL 46
+L+ +H D+ P + G Y LT + ++W Y L
Sbjct: 481 ILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPYFL 520
>ref|NP_178851.1| (NM_126810) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAM15219.1| (AC006250) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 767
Score = 52.4 bits (124), Expect = 4e-06
Identities = 35/110 (31%), Positives = 55/110 (49%), Gaps = 5/110 (4%)
Frame = -1
Query: 354 VNNDSATYLWHCRLGHIGVKRMKKLHKDGF---SESLGYESFDACEPCLLGKMTKTPFSR 184
+ + S + LWH R+GH+ + +K + + SL ES + C CLLGK T+ F +
Sbjct: 193 LTSTSMSSLWHARMGHVSLITLKSMIDKELIQGAPSLVIES-EVCGSCLLGKQTRQSFPQ 251
Query: 183 -IME*ATDLLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLLDE 40
+ AT LE+IH D+C P++ RY + + +W LL E
Sbjct: 252 ATVFRATKKLELIHGDLCGPITPKTSVGNRYIFVLIDDYSRYMWTVLLKE 301
>gb|AAK09230.1|AC084320_17 (AC084320) putative copia-like retrotransposon Hopscotch
polyprotein [Oryza sativa (japonica cultivar-group)]
gb|AAK72882.1|AC091123_1 (AC091123) putative gag-pol protein [Oryza sativa]
Length = 1219
Score = 52.4 bits (124), Expect = 4e-06
Identities = 34/98 (34%), Positives = 52/98 (52%), Gaps = 4/98 (4%)
Frame = -1
Query: 327 WHCRLGHIG---VKRMKKLHKDGFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLL 157
WH RLGH V R+ +K S ES C+ C GK + PF + +++ L
Sbjct: 446 WHGRLGHASKPIVLRVINQNKLPCSNESPSES--VCDACQQGKSHQLPFPKFFSVSSNPL 503
Query: 156 EIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLL 46
E+IH+DV P S D+ G RY+++F + + +W+Y L
Sbjct: 504 ELIHSDVWGPAS-DSVGAKRYYVSFIDDYSKFVWIYFL 540
>dbj|BAA01703.1| (D10880) ORF [Drosophila simulans]
Length = 1409
Score = 52.0 bits (123), Expect = 5e-06
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Frame = -1
Query: 438 GYTPNENGSLDLDHS----DTHIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKL-HK 274
G T ++NG + + +S + + N + + + LWH R GHI ++ ++ K
Sbjct: 377 GVTISKNGLMVVKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRK 436
Query: 273 DGFSESLGYE----SFDACEPCLLGKMTKTPFSRIME*ATDL---LEIIHTDVCDPMSVD 115
+ FS+ S + CEPCL GK + PF ++ + T + L ++H+DVC P++
Sbjct: 437 NMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKD-KTHIKRPLFVVHSDVCGPITPV 495
Query: 114 ARGKYRYFLTFTR*FEQIWVYLL 46
YF+ F F V L
Sbjct: 496 TLDDKNYFVIFVDQFTHYCVTYL 518
>sp|P04146|COPI_DROME Copia protein [Contains: Copia VLP protein; Copia protease ]
pir||OFFFCP copia polyprotein - fruit fly (Drosophila melanogaster)
retrotransposon copia
emb|CAA26444.1| (X02599) 31 KD polyprotein [Drosophila melanogaster]
emb|CAA28054.2| (X04456) hypothetical protein [Drosophila melanogaster]
Length = 1409
Score = 52.0 bits (123), Expect = 5e-06
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Frame = -1
Query: 438 GYTPNENGSLDLDHS----DTHIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKL-HK 274
G T ++NG + + +S + + N + + + LWH R GHI ++ ++ K
Sbjct: 377 GVTISKNGLMVVKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRK 436
Query: 273 DGFSESLGYE----SFDACEPCLLGKMTKTPFSRIME*ATDL---LEIIHTDVCDPMSVD 115
+ FS+ S + CEPCL GK + PF ++ + T + L ++H+DVC P++
Sbjct: 437 NMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKD-KTHIKRPLFVVHSDVCGPITPV 495
Query: 114 ARGKYRYFLTFTR*FEQIWVYLL 46
YF+ F F V L
Sbjct: 496 TLDDKNYFVIFVDQFTHYCVTYL 518
>ref|NP_176060.1| (NM_104544) hypothetical protein [Arabidopsis thaliana]
gb|AAG09097.1|AC009323_8 (AC009323) Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 52.0 bits (123), Expect = 5e-06
Identities = 34/101 (33%), Positives = 50/101 (48%), Gaps = 3/101 (2%)
Frame = -1
Query: 339 ATYLWHCRLGHIGVKRMKKLHKDGFSESLGYESFDA--CEPCLLGKMTKTPFSRIME*AT 166
++ LWH RLGH K LH FS+ +FD+ CE C+ K T+ PF +
Sbjct: 503 SSQLWHQRLGH---PSSKALHLLPFSDVTS-STFDSKTCEICIQAKQTRDPFPLSSNKTS 558
Query: 165 DLLEIIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLL 46
E++H D+ P + RYFLT + + +W+YLL
Sbjct: 559 FAFELVHCDLWGPYRTTSICGSRYFLTLVDDYSRAVWLYLL 599
>ref|NP_176077.1| (NM_104561) polyprotein, putative [Arabidopsis thaliana]
gb|AAG50751.1|AC079733_19 (AC079733) polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 52.0 bits (123), Expect = 5e-06
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = -1
Query: 330 LWHCRLGHIGVKRMKKLHKDGFSESLGYESFD-ACEPCLLGKMTKTPFSRIME*ATDLLE 154
LWH RLGH K + L ++ S G E + C+ C+ K T+ F + D +
Sbjct: 515 LWHRRLGHASDKIVNLLPRELLSS--GKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQ 572
Query: 153 IIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLLDE 40
+IH DV P + RYFLT + + +WVYL+ +
Sbjct: 573 LIHCDVWGPYRAPSYSGARYFLTIVDDYSRGVWVYLMTD 611
>dbj|BAB10743.1| (AB010695) retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 52.0 bits (123), Expect = 5e-06
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = -1
Query: 330 LWHCRLGHIGVKRMKKLHKDGFSESLGYESFD-ACEPCLLGKMTKTPFSRIME*ATDLLE 154
LWH RLGH K + L ++ S G E + C+ C+ K T+ F + D +
Sbjct: 291 LWHRRLGHASDKIVNLLPRELLSS--GKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQ 348
Query: 153 IIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLLDE 40
+IH DV P + RYFLT + + +WVYL+ +
Sbjct: 349 LIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTD 387
>prf||1107279B ORF g [Drosophila sp.]
Length = 1410
Score = 52.0 bits (123), Expect = 5e-06
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Frame = -1
Query: 438 GYTPNENGSLDLDHS----DTHIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKL-HK 274
G T ++NG + + +S + + N + + + LWH R GHI ++ ++ K
Sbjct: 378 GVTISKNGLMVVKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRK 437
Query: 273 DGFSESLGYE----SFDACEPCLLGKMTKTPFSRIME*ATDL---LEIIHTDVCDPMSVD 115
+ FS+ S + CEPCL GK + PF ++ + T + L ++H+DVC P++
Sbjct: 438 NMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKD-KTHIKRPLFVVHSDVCGPITPV 496
Query: 114 ARGKYRYFLTFTR*FEQIWVYLL 46
YF+ F F V L
Sbjct: 497 TLDDKNYFVIFVDQFTHYCVTYL 519
>emb|CAA26447.1| (X02600) unidentified open reading frame I (1289 aa) [Drosophila
melanogaster]
Length = 1288
Score = 52.0 bits (123), Expect = 5e-06
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Frame = -1
Query: 438 GYTPNENGSLDLDHS----DTHIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKL-HK 274
G T ++NG + + +S + + N + + + LWH R GHI ++ ++ K
Sbjct: 377 GVTISKNGLMVVKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRK 436
Query: 273 DGFSESLGYE----SFDACEPCLLGKMTKTPFSRIME*ATDL---LEIIHTDVCDPMSVD 115
+ FS+ S + CEPCL GK + PF ++ + T + L ++H+DVC P++
Sbjct: 437 NMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKD-KTHIKRPLFVVHSDVCGPITPV 495
Query: 114 ARGKYRYFLTFTR*FEQIWVYLL 46
YF+ F F V L
Sbjct: 496 TLDDKNYFVIFVDQFTHYCVTYL 518
>ref|NP_177159.1| (NM_105670) hypothetical protein [Arabidopsis thaliana]
gb|AAB61111.1| (AC002062) Strong similarity to Zea mays retrotransposon Hopscotch
polyprotein (gb|U12626). [Arabidopsis thaliana]
Length = 1315
Score = 51.6 bits (122), Expect = 6e-06
Identities = 32/97 (32%), Positives = 45/97 (45%), Gaps = 2/97 (2%)
Frame = -1
Query: 330 LWHCRLGHIGVKRMKKLHKD-GFSESLGYESFDACEPCLLGKMTKTPFSRIME*ATDLLE 154
LWH RLGH V++++ + F + F C C + K PF ++ +
Sbjct: 406 LWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFH-CRVCHISKQKHLPFVSHNNKSSRPFD 464
Query: 153 IIHTDVCDPMSVDARGKYRYFLTFTR*FEQ-IWVYLL 46
+IH D P SV YRYFLT + + WVYLL
Sbjct: 465 LIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLL 501
>ref|NP_179636.1| (NM_127605) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD25646.1| (AC007109) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1461
Score = 51.6 bits (122), Expect = 6e-06
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Frame = -1
Query: 387 HIHNIETKRCKVNNDSATYLWHCRLGHIGVKRMKKLHKDGFSESLGY-----E