The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_A06_T7.seq Fgr-S3_1_A06_T7 LENGTH:654bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A06 ; CLONELIB: n/a
(654 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF326781.1|AF326781 Triticum monococcum actin (ACT-1) ge... 789 0.0
gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115... 731 0.0
gb|AF474373.1| Hordeum vulgare subsp. vulgare chromosome 1 ... 184 8e-44
gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar More... 178 5e-42
gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, comp... 168 5e-39
gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 163 3e-37
gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete s... 155 7e-35
dbj|AB061328.1| Avena sativa LTR-retrotransposon OARE-1 gag... 143 3e-31
dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag... 143 3e-31
emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like re... 115 6e-23
gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex B... 109 4e-21
emb|AJ279072.1|HVU279072 Hordeum vulgare BARE-2 and partial... 109 4e-21
gb|AF339051.1|AF339051 Triticum monococcum WIS-2-1A Ty1-cop... 96 6e-17
emb|X63184.1|TAWIS21A T.aestivum DNA for Wis-2-1A retrotran... 88 1e-14
emb|AJ269530.1|AST269530 Avena strigosa Ty1-copia retrotran... 70 3e-09
gb|AF391808.2| Zea mays chromosome 9S bz genomic region str... 62 8e-07
gb|AF120181.1|AF120181 Triticum aestivum cultivar Chinese S... 62 8e-07
gb|AC110794.3| Homo sapiens chromosome 4 clone RP11-598O12,... 42 0.72
emb|AL354749.6|AL354749 Human DNA sequence from clone RP11-... 42 0.72
emb|AL157826.8|AL157826 Human DNA sequence from clone RP11-... 42 0.72
gb|AE012996.1| Thermoanaerobacter tengcongensis strain MB4T... 40 2.9
ref|NG_000004.1| Homo sapiens genomic cytochrome P450, subf... 40 2.9
gb|AC106854.5| Homo sapiens chromosome 18, clone CTD-2302G2... 40 2.9
gb|AC012467.9| Homo sapiens chr3 BAC RP11-884K10 (Roswell P... 40 2.9
ref|NM_121061.1| Arabidopsis thaliana chromosome 5 clone CH... 40 2.9
gb|AC020650.11| Homo sapiens 3 BAC RP11-165B13 (Roswell Par... 40 2.9
gb|AC008774.7| Homo sapiens chromosome 5 clone CTD-2018M7, ... 40 2.9
gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15,... 40 2.9
gb|AY014799.1| Arabidopsis thaliana chromosome 5 40 2.9
gb|AC009426.8|AC009426 Homo sapiens, clone RP11-45H19, comp... 40 2.9
gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome II... 40 2.9
gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Rosw... 40 2.9
gb|AC005020.5|AC005020 Homo sapiens BAC clone GS1-259H13 fr... 40 2.9
gb|AC012067.2|AC012067 Homo sapiens BAC clone RP11-192N14 f... 40 2.9
emb|AL157698.8|AL157698 Human DNA sequence from clone RP13-... 40 2.9
emb|AL159972.8|AL159972 Human DNA sequence from clone RP11-... 40 2.9
gb|AC004072.1|AC004072 Human Chromosome X clone bWXD342, co... 40 2.9
emb|AL121968.10|HSJ196B13 Human DNA sequence from clone RP1... 40 2.9
emb|AL360334.1|ATF18D22 Arabidopsis thaliana DNA chromosome... 40 2.9
emb|AL356332.1|ATT31P16 Arabidopsis thaliana DNA chromosome... 40 2.9
emb|AL133321.11|AL133321 Human DNA sequence from clone RP13... 40 2.9
>gb|AF326781.1|AF326781 Triticum monococcum actin (ACT-1) gene, partial cds; putative
chromosome condensation factor (CCF), putative resistance
protein (RGA-2), putative resistance protein (RGA2) and
putative nodulin-like-like protein (NLL) gene, complete
cds; and retrotransp>
Length = 211009
Score = 789 bits (398), Expect = 0.0
Identities = 573/626 (91%), Gaps = 4/626 (0%)
Strand = Plus / Plus
Query: 24 tatttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtga 83
|||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 47790 tatttcagacttgtgtctcattaagtagatatacccatatctgctcaaatcatct-gtga 47848
Query: 84 aggtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcgg 143
|||||| ||||||| ||||| ||||||||| | ||||||||| ||||| |||||||| |
Sbjct: 47849 aggtcagaaaataatgatacccgccacgagccttaacactcatcggatctcatacatcag 47908
Query: 144 tgtgtattatttccaataagtcagtagctcattccattattctggagaacggagttttag 203
| ||||||||||||||||||||||| |||| ||||| ||| ||||||| | |||||||
Sbjct: 47909 tatgtattatttccaataagtcagttgctcgctccatagttccggagaacagcgttttag 47968
Query: 204 tcatcttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccg 263
|||||||||| | ||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct: 47969 tcatcttgcccatgaggcatggttcgcaagcatcaactgattcataatcaagtgattcca 48028
Query: 264 aaaatccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagt 323
|||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 48029 aaaacccatcagcatggagtttcttcatgcgctttacaccaatatgacctaaacggcagt 48088
Query: 324 gccacaaataagttgcactatcattattaactttgcatcttttggtttcaatattatgaa 383
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 48089 gccacaaataagttgcactatcattattcactttgcatcttttggtttcaatattacgat 48148
Query: 384 tatgtgtatcactatgatcgagatccaatgaaccattttcattgggtgtgtaaccatata 443
|||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 48149 tatgtgtatcactacgatcgagatccaacgaactattttcattgggtgtgtaaccatata 48208
Query: 444 aggttttattcatgtaaacagaacaacaatttattctcttacttaaatgaataaccgtat 503
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct: 48209 aggttttattcatgtaaacagaacaaaaagttattctcttacttaaatgaataaccatat 48268
Query: 504 tgcaataaacatgatgaaatcatattcatgctcaacgc-aaacaccaaataacacttatt 562
| ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 48269 tacaataaacatgatcaaatcatattcatgctcaacgcaaaacaccaaa-aacacttatt 48327
Query: 563 tagtttcaacactaatcccgaaag-atagggagtgtgcaatgatgatcatatcaatcttg 621
|| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 48328 caggttcaacactaatcccgaaagtatagggagtgtgcgatgatgatcatatcaatcttg 48387
Query: 622 gaactacttccaacacacatcgtcac 647
|||| |||||||||||||||||||||
Sbjct: 48388 gaaccacttccaacacacatcgtcac 48413
Score = 789 bits (398), Expect = 0.0
Identities = 576/630 (91%), Gaps = 4/630 (0%)
Strand = Plus / Plus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaag 85
||||||||| |||||| |||||||||||||| ||||||||||||||| ||||| |||||
Sbjct: 36693 tttcagactcatgttttatcaagtagatatatccatatctgctcaaaacatcta-tgaag 36751
Query: 86 gtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtg 145
|||| ||||||| ||||||||| ||||| | ||||||||| ||| ||||||||| ||
Sbjct: 36752 gtcagaaaataatgatacttgctgcgagccttaacactcatcggactgcatacatcagta 36811
Query: 146 tgtattatttccaataagtcagtagctcattccattattctggagaacggagttttagtc 205
||||||||||||||||||| ||| |||| |||||| ||||||||||||| ||||||||
Sbjct: 36812 tgtattatttccaataagttagttgctcgctccattgttctggagaacggccttttagtc 36871
Query: 206 atcttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccgaa 265
|||||||| | ||||| |||||||||||||||| |||||||||| ||||||||||| ||
Sbjct: 36872 atcttgcccatgaggcatggttcgcaagcatcaagtgattcataatcaagtgattccaaa 36931
Query: 266 aatccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgc 325
| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 36932 agcccatcggcatggagtttcttcatgcgctttacaccaatatgacctaaacggcagtgc 36991
Query: 326 cacaaataagttgcactatcattattaactttgcatcttttggtttcaatattatgaata 385
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 36992 cacaaataagttgcactatcattattaacattgcatcttttggcttcaatattatgaata 37051
Query: 386 tgtgtatcactatgatcgagatccaatgaaccattttcattgggtgtgtaaccatataag 445
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 37052 tgtgtatcactacgatcgagatccaatgaaccattttcattgggtgtataaccatagaag 37111
Query: 446 g-ttttattcatgtaaacagaacaacaatttattctcttacttaaatgaataaccgtatt 504
| |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct: 37112 gtttttattcatgtaaacagaacaacaa-ttattttctaacttaaatgaataaccgtatt 37170
Query: 505 gcaataaacatgatgaaatcatattcatgctcaacgcaaacaccaaataacacttattta 564
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 37171 gcaataaacatgataaaatcatattcatgttcaacgcaaacaccaaataacacttattta 37230
Query: 565 gtttcaacactaatcccg-aaagatagggagtgtgcaatgatgatcatatcaatcttgga 623
| |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 37231 ggttcaacactaatcccgaaaatatagggagtgtgcgatgatgatcatatcaatcttgga 37290
Query: 624 actacttccaacacacatcgtcacctcgcc 653
||||||||||||||||||| ||||||||||
Sbjct: 37291 actacttccaacacacatcatcacctcgcc 37320
Score = 735 bits (371), Expect = 0.0
Identities = 562/623 (90%), Gaps = 2/623 (0%)
Strand = Plus / Plus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaag 85
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 136115 tttcagacttatgtttcatcaagtagatatactcatatctgctcaaatcatct-gtgaag 136173
Query: 86 gtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtg 145
||| ||||||| ||||| || | ||||| |||| | |||| ||| | |||||||| ||
Sbjct: 136174 atcagaaaataatgatacctgtcgcgagcctcaatattcatcggaccacatacatcagta 136233
Query: 146 tgtattatttccaataagtcagtagctcattccattattctggagaacggagttttagtc 205
||||| |||||||| || || || |||| |||||| ||| ||||| |||| ||||||
Sbjct: 136234 tgtatgatttccaacaaatctgttgctcgctccattgttccaaagaacagagtcttagtc 136293
Query: 206 atcttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccgaa 265
|||||||| | ||||| |||||||||||||||| |||||||||| ||||||||||| ||
Sbjct: 136294 atcttgcccatgaggcatggttcgcaagcatcaactgattcataatcaagtgattccaaa 136353
Query: 266 aatccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgc 325
| ||||| ||||||||||||||||| ||||||||| |||||||| |||||| |||||
Sbjct: 136354 agcccatcagcatggagtttcttcatgcactttacaccaatatgacctaaacggtagtgc 136413
Query: 326 cacaaataagttgcactatcattattaactttgcatcttttggtttcaatattatgaata 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 136414 tacaaataagttgcactatcattattaactttgcatcttttggtttcaatattatgatta 136473
Query: 386 tgtgtatcactatgatcgagatccaatgaaccattttcattgggtgtgtaaccatataag 445
|||||||||||| ||||||| ||||| |||| ||||||||||||| ||||||||||||||
Sbjct: 136474 tgtgtatcactacgatcgaggtccaacgaactattttcattgggtttgtaaccatataag 136533
Query: 446 gttttattcatgtaaacagaacaacaatttattctcttacttaaatgaataaccgtattg 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 136534 gttttattcatgtaaacagaacaacaatttattctcttacttaaatgaataaccgtttta 136593
Query: 506 caataaacatgatgaaatcatattcatgctcaacgcaaacaccaaataacacttatttag 565
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 136594 caataaacatgatcaaatcatattcatgctcaacgcaaacaccaaataacatttatttag 136653
Query: 566 tttcaacactaatcccgaaa-gatagggagtgtgcaatgatgatcatatcaatcttggaa 624
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 136654 gttcaacactaatcccgaaattatagggagtgtgcgatgatgatcatatcaatcttggaa 136713
Query: 625 ctacttccaacacacatcgtcac 647
| |||||||||||||||||||||
Sbjct: 136714 ccacttccaacacacatcgtcac 136736
Score = 377 bits (190), Expect = e-101
Identities = 335/382 (87%), Gaps = 1/382 (0%)
Strand = Plus / Minus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaag 85
||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 118797 tttcagacttatgtttcattaagtagatatacccatatctgcttaaatcatct-gtgaag 118739
Query: 86 gtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtg 145
|| | |||||||||||| ||||||||| |||| | |||| ||| | |||||||||||
Sbjct: 118738 gtgagaaaataacgatatccgccacgagcctcaatattcatcggaccacatacatcggta 118679
Query: 146 tgtattatttccaataagtcagtagctcattccattattctggagaacggagttttagtc 205
||||| ||||||||||| | || |||| ||||| | | ||||||||| |||||||||
Sbjct: 118678 tgtatgatttccaataaatttgttgctctctccatagtgccggagaacggtgttttagtc 118619
Query: 206 atcttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccgaa 265
|||||||||| ||||||||||||||| || ||| |||||||||| |||||| |||| ||
Sbjct: 118618 atcttgcctatgaggcacggttcgcaaacaccaagtgattcataatcaagtggttccaaa 118559
Query: 266 aatccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgc 325
| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 118558 agcccatcagtatggagtttcttcatgcgctttacaccgatatgacctaaacggcagtgc 118499
Query: 326 cacaaataagttgcactatcattattaactttgcatcttttggtttcaatattatgaata 385
||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||
Sbjct: 118498 cacaaataagttgcactatcattatcaactctgcatcttttggcttcaacattatgaata 118439
Query: 386 tgtgtatcactatgatcgagat 407
||||||| |||| ||||||||
Sbjct: 118438 tgtgtattactactatcgagat 118417
Score = 329 bits (166), Expect = 2e-87
Identities = 280/317 (88%), Gaps = 2/317 (0%)
Strand = Plus / Plus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaag 85
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 101989 tttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatctat--aag 102046
Query: 86 gtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtg 145
|||| ||||||||||||| ||| ||||| ||||||||||| ||| |||||||||| ||
Sbjct: 102047 gtcagaaaataacgatacccgccgcgagcctcaacactcatcggaccgcatacatcagta 102106
Query: 146 tgtattatttccaataagtcagtagctcattccattattctggagaacggagttttagtc 205
||||||||||||||||||||||| |||| |||||| || |||||| ||||| ||||||
Sbjct: 102107 tgtattatttccaataagtcagttgctcgctccattgtttcggagaatggagtcttagtc 102166
Query: 206 atcttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccgaa 265
|||||||| ||||| |||||||||||||||| |||||||||| ||||||||||| ||
Sbjct: 102167 atcttgcccttgaggcatggttcgcaagcatcaagtgattcataatcaagtgattccaaa 102226
Query: 266 aatccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgc 325
| ||||| ||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 102227 agcccatcagcatggagtttcttcatgcgctttacaccaatatgacctaaatggcagtgc 102286
Query: 326 cacaaataagttgcact 342
|||||||||||||||||
Sbjct: 102287 cacaaataagttgcact 102303
Score = 54.0 bits (27), Expect = 2e-04
Identities = 108/133 (81%), Gaps = 4/133 (3%)
Strand = Plus / Minus
Query: 436 accatataaggttttattcatgtaaacagaacaacaatttattctcttacttaaatgaat 495
|||||| ||| | ||| |||| |||| |||||||| ||| ||||||| | ||||||||||
Sbjct: 118382 accataaaagatattactcatataaatagaacaaccatt-attctctgatttaaatgaat 118324
Query: 496 aaccgtattgcaataaacatgat---gaaatcatattcatgctcaacgcaaacaccaaat 552
|||||| | ||| ||||| ||| || || || |||||||||||||| ||||||||
Sbjct: 118323 aaccgtctcgcatcaaacaagatccagatataatgttcatgctcaacgctggcaccaaat 118264
Query: 553 aacacttatttag 565
|||| ||||||||
Sbjct: 118263 aacaattatttag 118251
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence
Length = 215241
Score = 731 bits (369), Expect = 0.0
Identities = 563/625 (90%), Gaps = 2/625 (0%)
Strand = Plus / Plus
Query: 24 tatttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtga 83
||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 1335 tatttcaaacttgtgtttcatcaagtagatatactcatatctgctcaaatcatct-gtga 1393
Query: 84 aggtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcgg 143
|| ||| ||||||| ||||| || | |||| |||| | |||| ||| | |||||||| |
Sbjct: 1394 agatcagaaaataatgatacctgtcgcgagtctcaatattcatcggaccacatacatcag 1453
Query: 144 tgtgtattatttccaataagtcagtagctcattccattattctggagaacggagttttag 203
| ||||| |||||||| || || || |||| |||||| ||| | |||||||||| ||||
Sbjct: 1454 tatgtatgatttccaacaaatctgttgctcgctccattgttccgaagaacggagtcttag 1513
Query: 204 tcatcttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccg 263
||||||| || | ||||| |||| ||||||||||| |||||||||| |||||||||||
Sbjct: 1514 tcatcttacccatgaggcatggtttgcaagcatcaactgattcataatcaagtgattcca 1573
Query: 264 aaaatccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagt 323
||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 1574 aaagcccatcagcatggagtttcttcatgcgctttacaccaatatgacctaaacggcagt 1633
Query: 324 gccacaaataagttgcactatcattattaactttgcatcttttggtttcaatattatgaa 383
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 gccacaaataagctgcactatcattattaactttgcatcttttggtttcaatattatgat 1693
Query: 384 tatgtgtatcactatgatcgagatccaatgaaccattttcattgggtgtgtaaccatata 443
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1694 tatgtgtatcactatgatcgagatccaatgaactattttcattgggtgtgtaaccatata 1753
Query: 444 aggttttattcatgtaaacagaacaacaatttattctcttacttaaatgaataaccgtat 503
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 gggttttattcatgtaaatagaacaacaatttattctcttacttaaatgaataaccgtat 1813
Query: 504 tgcaataaacatgatgaaatcatattcatgctcaacgcaaacaccaaataacacttattt 563
| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1814 tacaataaacatgatcaaatcatattcatgctcaatgcaaacaccaaataacatttattt 1873
Query: 564 agtttcaacactaatcccgaaag-atagggagtgtgcaatgatgatcatatcaatcttgg 622
|| ||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||
Sbjct: 1874 aggttcaacactaatcccaaaagtatagtgagtgtgcgatgatgatcatatcaatcttgt 1933
Query: 623 aactacttccaacacacatcgtcac 647
||| |||||||||||||||||||||
Sbjct: 1934 aaccacttccaacacacatcgtcac 1958
Score = 593 bits (299), Expect = e-167
Identities = 373/395 (94%), Gaps = 2/395 (0%)
Strand = Plus / Minus
Query: 252 caagtgattccgaaaatccatctttatggagtttcttcatgcgctttacaccgatatgac 311
||||||||||| ||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 95292 caagtgattccaaaagcccatcagcatggagtttcttcatgcgctttacaccaatatgac 95233
Query: 312 ccaaacggcagtgccacaaataagttgcactatcattattaactttgcatcttttggttt 371
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95232 ctaaacggcagtgccacaaataagttgcactatcattattaactttgcatcttttggttt 95173
Query: 372 caatattatgaatatgtgtatcactatgatcgagatccaatgaaccattttcattgggtg 431
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 95172 caatattatgaatatgtgtatcactacgatcgagatccaatgaaccattttcattgggtg 95113
Query: 432 tgtaaccatataaggttttattcatgtaaacagaacaacaatttattctcttacttaaat 491
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 95112 tgtaaccatataaggttttattcatgtaaacagaacaacaatttattcttttacttaaat 95053
Query: 492 gaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaacaccaaa 551
||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 95052 gaataactgtattacaataaacatgatcaaatcatattcatgctcaatgcaaacaccaaa 94993
Query: 552 taacacttatttagtttcaacactaatcccgaaag-atagggagtgtgcaatgatgatca 610
|||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct: 94992 taacacttatttaggttcaacactaatcctgaaagtatagggagtgtgcgatgatgatca 94933
Query: 611 tatcaa-tcttggaactacttccaacacacatcgt 644
|||||| | ||||||| | ||||||||||||||||
Sbjct: 94932 tatcaatttttggaaccaattccaacacacatcgt 94898
Score = 321 bits (162), Expect = 5e-85
Identities = 328/382 (85%), Gaps = 1/382 (0%)
Strand = Plus / Minus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaag 85
||||||||||||||||||| || |||||||||||||||||||| || |||||| ||||||
Sbjct: 213326 tttcagacttatgtttcattaactagatatacccatatctgcttaagtcatct-gtgaag 213268
Query: 86 gtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtg 145
| | |||||||||||| ||||||||| |||| | |||| ||| | |||||||| ||
Sbjct: 213267 gcgagaaaataacgatatccgccacgagcctcaaaattcatcggaccacatacatctgta 213208
Query: 146 tgtattatttccaataagtcagtagctcattccattattctggagaacggagttttagtc 205
||||| |||||||| || || || |||| ||||| | | ||||||||| |||||||||
Sbjct: 213207 tgtatgatttccaacaaatctgttgctctctccatagtaccggagaacggtgttttagtc 213148
Query: 206 atcttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccgaa 265
|||||||| | ||| |||||||||||| | ||| |||||||||| ||||| |||| ||
Sbjct: 213147 atcttgcccatgaggtacggttcgcaagtaccaagtgattcataatgaagtggttccaaa 213088
Query: 266 aatccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgc 325
| |||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 213087 agtccatcagtatggagtttcttcatgcgctttacatcgatatgacctaaacggcagtgc 213028
Query: 326 cacaaataagttgcactatcattattaactttgcatcttttggtttcaatattatgaata 385
||||||||||||||||||||||||| |||| |||||||||||| ||| | ||||||||||
Sbjct: 213027 cacaaataagttgcactatcattatcaactctgcatcttttggcttctacattatgaata 212968
Query: 386 tgtgtatcactatgatcgagat 407
|||||||||||| ||||||||
Sbjct: 212967 tgtgtatcactactatcgagat 212946
Score = 248 bits (125), Expect = 6e-63
Identities = 198/221 (89%), Gaps = 1/221 (0%)
Strand = Plus / Minus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaag 85
|||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 95502 tttcagacttgtgtttcatcaaatagatatacccatatctgctcaaatcatct-gtgaag 95444
Query: 86 gtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtg 145
|||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 95443 gtcagaaaataatgatacttgccacgagcctcaacactcattggatcgcatacatcagta 95384
Query: 146 tgtattatttccaataagtcagtagctcattccattattctggagaacggagttttagtc 205
||||||||||||||||||| ||| ||| || ||| ||| |||||||||||| ||||||
Sbjct: 95383 tgtattatttccaataagttagttgcttgctctattgttccggagaacggagtcttagtc 95324
Query: 206 atcttgcctaaaaggcacggttcgcaagcatcaaatgattc 246
||| |||| | ||||| |||||||||||||||| ||||||
Sbjct: 95323 atcctgcccatgaggcatggttcgcaagcatcaagtgattc 95283
Score = 85.7 bits (43), Expect = 5e-14
Identities = 254/323 (78%), Gaps = 1/323 (0%)
Strand = Plus / Minus
Query: 28 tcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaaggt 87
|||||||| ||||||||||||||| |||||||||||| ||||| || | | |||| |||
Sbjct: 115647 tcagacttgagtttcatcaagtagacatacccatatctactcaagtcct-tagtgagggt 115589
Query: 88 caaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtgtg 147
| || ||||||||| || ||||| |||| ||||||||| |||| ||||| || ||
Sbjct: 115588 gagaacataacgatagccaccgcgagcctcaatgctcattggaccgcacacatcagtatg 115529
Query: 148 tattatttccaataagtcagtagctcattccattattctggagaacggagttttagtcat 207
||| ||||| ||||| | || |||| || ||| ||| |||||| ||||| || |||||
Sbjct: 115528 tatgatttctaataatttggtcgctcgctctattgttccggagaatggagtcttggtcat 115469
Query: 208 cttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccgaaaa 267
|| || | ||||| |||||||| | ||||| ||||||||| |||| || ||| |||
Sbjct: 115468 ttttcccatgaggcatggttcgcacgtgtcaaacgattcataatcaagagactccaaaag 115409
Query: 268 tccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgcca 327
||| ||| | |||||||||||||||| || ||||| || ||||| | ||| |||||||
Sbjct: 115408 tccgtctgcacggagtttcttcatgcgtttgacaccaatgtgaccaaggcggtagtgcca 115349
Query: 328 caaataagttgcactatcattat 350
||| || || | |||||||||||
Sbjct: 115348 caagtatgtgggactatcattat 115326
Score = 67.9 bits (34), Expect = 1e-08
Identities = 124/152 (81%), Gaps = 4/152 (2%)
Strand = Plus / Minus
Query: 436 accatataaggttttattcatgtaaacagaacaacaatttattctcttacttaaatgaat 495
|||||| ||| | ||| |||| |||| |||||||| ||| ||||||| | ||||||||||
Sbjct: 212911 accataaaagatattactcatataaatagaacaaccatt-attctctgatttaaatgaat 212853
Query: 496 aaccgtattgcaataaacatgat---gaaatcatattcatgctcaacgcaaacaccaaat 552
|||||| | ||| |||||| ||| || || || |||||||||||||| ||||||||
Sbjct: 212852 aaccgtctcgcattaaacaagatccagatataatgttcatgctcaacgctggcaccaaat 212793
Query: 553 aacacttatttagtttcaacactaatcccgaa 584
|||| |||||||| | || ||||||||||||
Sbjct: 212792 aacaattatttaggtctaatactaatcccgaa 212761
>gb|AF474373.1| Hordeum vulgare subsp. vulgare chromosome 1 clone BAC 259I16
Length = 124050
Score = 184 bits (93), Expect = 8e-44
Identities = 304/373 (81%), Gaps = 1/373 (0%)
Strand = Plus / Minus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaag 85
|||||||||| || ||||||||||||| ||| |||||||| || ||||| || ||||||
Sbjct: 33238 tttcagacttgtgcttcatcaagtagacataaccatatctacttaaatcgtca-gtgaag 33180
Query: 86 gtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtg 145
|| | |||||||||||| ||| || || || || ||||||||| | || ||||||||
Sbjct: 33179 gtgagaaaataacgatatccgccgcgtgcctctacgctcattggaccacacacatcggta 33120
Query: 146 tgtattatttccaataagtcagtagctcattccattattctggagaacggagttttagtc 205
||||| |||||||| |||||| | || | |||||| ||| |||||||||||| ||||||
Sbjct: 33119 tgtatgatttccaacaagtcacttgcacgctccattgttccggagaacggagtcttagtc 33060
Query: 206 atcttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccgaa 265
|||||||| | ||||| |||||||| | |||| ||| ||| | ||||||| ||| ||
Sbjct: 33059 atcttgcccatgaggcatggttcgcacgtgtcaagtgaatcaaagtcaagtgactccaaa 33000
Query: 266 aatccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgc 325
| |||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 32999 agtccatcagcatggagtttcttcatgcgctttacaccaatatgacccaagcggcagtgc 32940
Query: 326 cacaaataagttgcactatcattattaactttgcatcttttggtttcaatattatgaata 385
|||||| | | || |||||||| || ||| | ||||||||| ||||| ||||| |||
Sbjct: 32939 cacaaaaatatggcgctatcattgtttactctaactcttttggtctcaatgttatgtata 32880
Query: 386 tgtgtatcactat 398
|| ||||| ||||
Sbjct: 32879 tgcgtatcgctat 32867
Score = 137 bits (69), Expect = 2e-29
Identities = 298/373 (79%), Gaps = 1/373 (0%)
Strand = Plus / Plus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaag 85
|||||||||| || ||||| ||||||| ||| |||||||| |||||||| || ||||||
Sbjct: 41444 tttcagacttgtgcttcattaagtagacataaccatatctactcaaatcgtca-gtgaag 41502
Query: 86 gtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtg 145
|| | |||||||||||| | | || || || || ||||| ||| | || ||||||||
Sbjct: 41503 gtgagaaaataacgatatccgtcgcgtgcctctacgctcatcggaccacacacatcggta 41562
Query: 146 tgtattatttccaataagtcagtagctcattccattattctggagaacggagttttagtc 205
||||| |||||||| ||| || | || | |||||| ||| |||||| ||||||||||||
Sbjct: 41563 tgtatgatttccaacaagccacttgcacgctccattgttccggagaatggagttttagtc 41622
Query: 206 atcttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccgaa 265
|||||||| | ||| | |||||||| | |||| ||| ||| | ||||||| ||| ||
Sbjct: 41623 atcttgcccatgagggatggttcgcacgtgtcaagtgaatcaaagtcaagtgactccaaa 41682
Query: 266 aatccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgc 325
| |||||| ||| |||||||||||||||||||||| |||||||| || || ||||||
Sbjct: 41683 agtccatcggcatgttgtttcttcatgcgctttacaccaatatgacctaagcgacagtgc 41742
Query: 326 cacaaataagttgcactatcattattaactttgcatcttttggtttcaatattatgaata 385
|||||| | | || |||||||| |||||| | ||||||||| ||||| ||||| ||
Sbjct: 41743 cacaaaaatatggcgctatcattgttaactctaactcttttggtctcaatgttatgtatg 41802
Query: 386 tgtgtatcactat 398
|||||||||||||
Sbjct: 41803 tgtgtatcactat 41815
Score = 48.1 bits (24), Expect = 0.012
Identities = 71/86 (82%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 474 ttattctcttacttaaatgaataaccgtattgcaataaacatgat---gaaatcatattc 530
||||||||| ||||||| || ||||||| | |||||||||| ||| || || || |||
Sbjct: 41893 ttattctctgacttaaaagagtaaccgtctcgcaataaacaagatccagatataatgttc 41952
Query: 531 atgctcaacgcaaacaccaaataaca 556
|||||||||||| ||| ||||||||
Sbjct: 41953 atgctcaacgcaggcactaaataaca 41978
Score = 40.1 bits (20), Expect = 2.9
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 528 ttcatgctcaacgcaaacaccaaataacacttatttagtttcaacactaatcccga 583
||||||||||||||| ||| |||||||| ||||| |||| ||||||||||||
Sbjct: 32732 ttcatgctcaacgcaggcactaaataacaacgatttaagttcatcactaatcccga 32677
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
complete sequence
Length = 102842
Score = 178 bits (90), Expect = 5e-42
Identities = 271/330 (82%), Gaps = 1/330 (0%)
Strand = Plus / Minus
Query: 40 ttcatcaagtagatatacccatatctgctcaaatcatcttgtgaaggtcaaaaaataacg 99
||||||||||||||||||||||| || ||||||||||| |||| || | || ||||||
Sbjct: 24169 ttcatcaagtagatatacccatacctactcaaatcatcg-gtgagagtgagaacataacg 24111
Query: 100 atacttgccacgagcatcaacactcattggatcgcatacatcggtgtgtattatttccaa 159
||| | || ||||| ||||| |||||||| | || ||||| || ||||||||||||||
Sbjct: 24110 atagtcaccgcgagcttcaacgttcattggaccacacacatcagtatgtattatttccaa 24051
Query: 160 taagtcagtagctcattccattattctggagaacggagttttagtcatcttgcctaaaag 219
|||||| || |||| |||||||||| ||||| ||||| ||||||||||| || | ||
Sbjct: 24050 taagtcggttgctctctccattattcctgagaatggagtcttagtcatcttacccatgag 23991
Query: 220 gcacggttcgcaagcatcaaatgattcataaccaagtgattccgaaaatccatctttatg 279
|||||||||||| | |||||||||||| || |||| || || | | |||||| ||||
Sbjct: 23990 gcacggttcgcatgtgtcaaatgattcaaaatcaagagactctaatagtccatcagtatg 23931
Query: 280 gagtttcttcatgcgctttacaccgatatgacccaaacggcagtgccacaaataagttgc 339
||| |||||||||||||| || ||||||||||| | ||| |||||||||| || || |
Sbjct: 23930 gagcttcttcatgcgcttaacgccgatatgaccaaggcggtagtgccacaagtatgtggg 23871
Query: 340 actatcattattaactttgcatcttttggt 369
||||||||||| |||||| |||||||||||
Sbjct: 23870 actatcattatcaactttacatcttttggt 23841
Score = 95.6 bits (48), Expect = 6e-17
Identities = 121/144 (84%), Gaps = 1/144 (0%)
Strand = Plus / Plus
Query: 277 atggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgccacaaataagt 336
|||||| |||||||||| |||||||| | ||||| ||| ||||||||||||| |||||
Sbjct: 60987 atggagcttcttcatgcattttacaccaacatgactcaagtggcagtgccacaactaagt 61046
Query: 337 tgcactatcattattaactttgcatcttttggtttcaatattatgaatatgtgtatcact 396
| |||||||||| || |||| ||||||||| ||||||||||| ||||||| ||||
Sbjct: 61047 ggtactatcattagta-ctttttatcttttggcactaatattatgaacatgtgtaacact 61105
Query: 397 atgatcgagatccaatgaaccatt 420
||||||||||| |||| |||||||
Sbjct: 61106 atgatcgagattcaataaaccatt 61129
Score = 95.6 bits (48), Expect = 6e-17
Identities = 144/172 (83%), Gaps = 3/172 (1%)
Strand = Plus / Plus
Query: 486 ttaaatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaac 545
|||||||||||| |||||||||| ||||| ||| |||||| ||||||||| ||||||||
Sbjct: 61170 ttaaatgaataatcgtattgcaacaaacacgatacaatcatgttcatgctccacgcaaac 61229
Query: 546 accaaataacacttattt-agtttcaacactaatcccga-aagatagggagtgtgc-aat 602
|||||||| || |||||| |||||| ||| |||||||| | | |||||| |||| |
Sbjct: 61230 accaaatagcaattatttgggtttcaccaccaatcccgatgatagagggagcgtgcgacc 61289
Query: 603 gatgatcatatcaatcttggaactacttccaacacacatcgtcacctcgcct 654
|||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 61290 tttgatcatatcaaccttggaaacacttccaacacgtatcgtcacctcgcct 61341
Score = 91.7 bits (46), Expect = 9e-16
Identities = 154/186 (82%), Gaps = 3/186 (1%)
Strand = Plus / Minus
Query: 236 tcaaatgattcataaccaagtgattccgaaa-atccatctttatggagtttcttcatgcg 294
|||| ||||||| || ||||||||||| || |||||||| ||||||| ||||||||||
Sbjct: 94592 tcaagtgattcaaaatcaagtgattccaaacgatccatctctatggagcttcttcatgca 94533
Query: 295 ctttacaccgatatgacccaaacggcagtgccacaaataagttgcactatcattattaac 354
|||| ||| | ||||| ||| |||| |||||||| ||||| | |||||||||||| ||
Sbjct: 94532 -tttataccaacatgactcaagtggcaatgccacaagtaagtggtactatcattatt-ac 94475
Query: 355 tttgcatcttttggtttcaatattatgaatatgtgtatcactatgatcgagatccaatga 414
|||| ||||||||| ||| ||||||| ||||||| ||||| ||||||||| |||| |
Sbjct: 94474 tttgtatcttttggcactaatgttatgaacatgtgtagcactacgatcgagattcaataa 94415
Query: 415 accatt 420
||||||
Sbjct: 94414 accatt 94409
Score = 89.7 bits (45), Expect = 3e-15
Identities = 142/169 (84%), Gaps = 4/169 (2%)
Strand = Plus / Minus
Query: 489 aatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaacacc 548
||||||||| |||||||||| ||||| ||| || |||| || |||||||| |||||||||
Sbjct: 94363 aatgaataatcgtattgcaacaaacacgatcaa-tcatgtttatgctcaatgcaaacacc 94305
Query: 549 aaataacacttattta-gtttcaacactaatcccga-aagatagggagtgtgcaatg-at 605
|||||||| ||||||| |||| | ||| |||||||| | | |||||| |||| ||| |
Sbjct: 94304 aaataacagttatttaggttttaccaccaatcccgatgatagagggagcgtgcgatgttt 94245
Query: 606 gatcatatcaatcttggaactacttccaacacacatcgtcacctcgcct 654
||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 94244 gatcacatcaaccttggaaacacttccaacacttatcgtcacctcgcct 94196
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence
Length = 102433
Score = 168 bits (85), Expect = 5e-39
Identities = 296/365 (81%), Gaps = 1/365 (0%)
Strand = Plus / Minus
Query: 28 tcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaaggt 87
|||||||| || ||||| ||||||| ||| |||||||| |||||||| || |||||||
Sbjct: 47878 tcagacttgtgcttcattaagtagacataaccatatctactcaaatcgtcaa-tgaaggt 47820
Query: 88 caaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtgtg 147
| |||||||||||| ||| || || || ||||||| ||| | || |||||||| ||
Sbjct: 47819 gagaaaataacgatatccgccgcgcgcctccgcactcatcggaccacacacatcggtatg 47760
Query: 148 tattatttccaataagtcagtagctcattccattattctggagaacggagttttagtcat 207
||| |||||||| |||||| | || | |||||| ||| |||||||||||| ||||||||
Sbjct: 47759 tatgatttccaacaagtcacttgcacgctccattgttccggagaacggagtcttagtcat 47700
Query: 208 cttgcctaaaaggcacggttcgcaagcatcaaatgattcataaccaagtgattccgaaaa 267
||| || | ||||| |||||||| | |||| ||| ||| || ||||||| ||| |||
Sbjct: 47699 ctttcccatgaggcatggttcgcacgtgtcaagtgaatcaaaatcaagtgactccaaaag 47640
Query: 268 tccatctttatggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgcca 327
|||||| |||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct: 47639 tccatcggtatggagtttcttcatgcgctttacaccaatatgacctaagcggcagtgcca 47580
Query: 328 caaataagttgcactatcattattaactttgcatcttttggtttcaatattatgaatatg 387
||| | | || |||||||| |||||| | ||||||||| ||||| ||||| |||||
Sbjct: 47579 taaaaacatggcgctatcattgttaactctaactcttttggtctcaatgttatgtatatg 47520
Query: 388 tgtat 392
|||||
Sbjct: 47519 tgtat 47515
Score = 109 bits (55), Expect = 4e-21
Identities = 144/171 (84%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 486 ttaaatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaac 545
|||||||||||| |||||||||||||||| ||| |||||| |||||||| |||||||
Sbjct: 55625 ttaaatgaataatcgtattgcaataaacacgatccaatcatgttcatgcttaacgcaagt 55684
Query: 546 accaaataacacttatttagtttcaacactaatcccgaaag-atagggagtgtgcaatg- 603
||||||||||| |||||||| || ||||| |||||||| | | | ||||||||| | |
Sbjct: 55685 accaaataacaattatttaggtttaacaccaatcccgatggtagatggagtgtgcgacgt 55744
Query: 604 atgatcatatcaatcttggaactacttccaacacacatcgtcacctcgcct 654
|||||||||||| ||||||| ||||| ||||| |||||||||||||||
Sbjct: 55745 ttgatcatatcaaccttggaaacacttctaacacgtatcgtcacctcgcct 55795
Score = 87.7 bits (44), Expect = 1e-14
Identities = 114/136 (83%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 285 tcttcatgcgctttacaccgatatgacccaaacggcagtgccacaaataagttgcactat 344
||||||||| |||| ||| | ||||| ||| |||||||||||||| ||||| | |||||
Sbjct: 55448 tcttcatgcaatttataccaacatgactcaagcggcagtgccacaagtaagtggtactat 55507
Query: 345 cattattaactttgcatcttttggtttcaatattatgaatatgtgtatcactatgatcga 404
||| |||| ||| | ||||||||| |||||||||||| ||||||| ||||| ||||||
Sbjct: 55508 catcatta-cttcgtatcttttggcaccaatattatgaacatgtgtaacactacgatcga 55566
Query: 405 gatccaatgaaccatt 420
||| |||| |||||||
Sbjct: 55567 gattcaataaaccatt 55582
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
Length = 261265
Score = 163 bits (82), Expect = 3e-37
Identities = 269/330 (81%), Gaps = 1/330 (0%)
Strand = Plus / Plus
Query: 40 ttcatcaagtagatatacccatatctgctcaaatcatcttgtgaaggtcaaaaaataacg 99
||||||||||||||||||||||| || |||||||||| | |||| || | || ||||||
Sbjct: 162426 ttcatcaagtagatatacccatacctactcaaatcat-tggtgagagtgagaacataacg 162484
Query: 100 atacttgccacgagcatcaacactcattggatcgcatacatcggtgtgtattatttccaa 159
||| || ||||| ||||| |||||||| | || ||||| || ||||||||||||||
Sbjct: 162485 ataaccaccgcgagcttcaacgttcattggaccacacacatcagtatgtattatttccaa 162544
Query: 160 taagtcagtagctcattccattattctggagaacggagttttagtcatcttgcctaaaag 219
|||||| || |||| |||||||||| ||||| ||||| |||||||||||||| | ||
Sbjct: 162545 taagtcggttgctctctccattattcctgagaatggagtcttagtcatcttgcccatgag 162604
Query: 220 gcacggttcgcaagcatcaaatgattcataaccaagtgattccgaaaatccatctttatg 279
||||||||| || | |||||||||||| | |||| || || | | |||||| |||
Sbjct: 162605 gcacggttcacatgtgtcaaatgattcaaagtcaagagactctaatagtccatcaaaatg 162664
Query: 280 gagtttcttcatgcgctttacaccgatatgacccaaacggcagtgccacaaataagttgc 339
||| |||||||||||||| | ||||||||||| | |||||||||||||| || || |
Sbjct: 162665 gagcttcttcatgcgcttaatgccgatatgaccaaggcggcagtgccacaagtatgtggg 162724
Query: 340 actatcattattaactttgcatcttttggt 369
||||||||||| ||||||||||||||||||
Sbjct: 162725 actatcattatcaactttgcatcttttggt 162754
Score = 141 bits (71), Expect = 1e-30
Identities = 148/171 (86%), Gaps = 2/171 (1%)
Strand = Plus / Minus
Query: 486 ttaaatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaac 545
|||||||||||| |||||||||||||||| ||| |||||| |||||||| ||||||| |
Sbjct: 148958 ttaaatgaataatcgtattgcaataaacacgatccaatcatgttcatgcttaacgcaagc 148899
Query: 546 accaaataacacttatttagtttcaacactaatcccgaaag-atagggagtgtgcaatg- 603
||||||||||| |||||||| || |||||||||||||| | | |||||| |||||| |
Sbjct: 148898 accaaataacaattatttaggtttaacactaatcccgatggtagagggagcgtgcaacgt 148839
Query: 604 atgatcatatcaatcttggaactacttccaacacacatcgtcacctcgcct 654
|||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 148838 ttgatcatatcaaccttggaaacacttccaacacgtatcgtcacctcgcct 148788
Score = 125 bits (63), Expect = 6e-26
Identities = 146/171 (85%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 486 ttaaatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaac 545
|||||||||||| |||||||||||||||| ||| |||||| |||||||| ||||||| |
Sbjct: 233818 ttaaatgaataatcgtattgcaataaacacgatccaatcatgttcatgcttaacgcaagc 233877
Query: 546 accaaataacacttatttagtttcaacactaatcccgaaag-atagggagtgtgcaatg- 603
||||||||||| |||||||| || ||||| |||||||| | | |||||| |||| | |
Sbjct: 233878 accaaataacaattatttaggtttaacaccaatcccgatggtagagggagcgtgcgacgt 233937
Query: 604 atgatcatatcaatcttggaactacttccaacacacatcgtcacctcgcct 654
|||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 233938 ttgatcatatcaaccttggaaacacttccaacacgtatcgtcacctcgcct 233988
Score = 117 bits (59), Expect = 2e-23
Identities = 145/171 (84%), Gaps = 2/171 (1%)
Strand = Plus / Minus
Query: 486 ttaaatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaac 545
|||||||||||| |||||||||||||||| ||| |||||| |||||||| ||| || |
Sbjct: 246770 ttaaatgaataatcgtattgcaataaacacgatccaatcatgttcatgcttaactaaagc 246711
Query: 546 accaaataacacttatttagtttcaacactaatcccgaaag-atagggagtgtgcaatg- 603
||||||||||| |||||||| || ||||| |||||||| | | |||||| |||| | |
Sbjct: 246710 accaaataacaattatttaggtttaacaccaatcccgatggtagagggagcgtgcgacgt 246651
Query: 604 atgatcatatcaatcttggaactacttccaacacacatcgtcacctcgcct 654
|||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 246650 ttgatcatatcaatcttggaaacacttccaacacgtatcgtcacctcgcct 246600
Score = 99.6 bits (50), Expect = 4e-18
Identities = 134/158 (84%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 499 cgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaacaccaaataacact 558
|||||||||||||||| ||| |||||| |||||||| ||| ||| |||||| ||||| |
Sbjct: 170315 cgtattgcaataaacacgatccaatcatgttcatgcttaacacaagcaccaa-taacaat 170373
Query: 559 tatttagtttcaacactaatcccgaaag-atagggagtgtgcaatgat-gatcatatcaa 616
||||||| || ||||| |||||||| | | ||||||||||| ||| | |||||||||||
Sbjct: 170374 tatttaggtttaacaccaatcccgatggtagagggagtgtgcgatgtttgatcatatcaa 170433
Query: 617 tcttggaactacttccaacacacatcgtcacctcgcct 654
||||||| ||||||||||| |||||||||||||||
Sbjct: 170434 ccttggaaacacttccaacacgtatcgtcacctcgcct 170471
Score = 83.8 bits (42), Expect = 2e-13
Identities = 97/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 307 atgacccaaacggcagtgccacaaataagttgcactatcattattaactttgcatctttt 366
||||| ||| |||||||||||||| ||||| | |||||||| ||||| || | |||||||
Sbjct: 233664 atgactcaagcggcagtgccacaagtaagtggtactatcatcattaa-ttcgtatctttt 233722
Query: 367 ggtttcaatattatgaatatgtgtatcactatgatcgagatccaatgaaccatt 420
|| |||||||||||| ||||||| ||||| ||||||||| |||| |||||||
Sbjct: 233723 ggcaccaatattatgaacatgtgtaacactacgatcgagattcaataaaccatt 233776
Score = 77.8 bits (39), Expect = 1e-11
Identities = 112/135 (82%), Gaps = 1/135 (0%)
Strand = Plus / Minus
Query: 286 cttcatgcgctttacaccgatatgacccaaacggcagtgccacaaataagttgcactatc 345
|||||||| |||| ||| | ||||| ||| |||||||||||||| ||||| | ||||||
Sbjct: 149133 cttcatgcaatttataccaacatgactcaagcggcagtgccacaagtaagtggtactatc 149074
Query: 346 attattaactttgcatcttttggtttcaatattatgaatatgtgtatcactatgatcgag 405
|| |||||| | | ||||||||| |||||| ||||| ||||||| ||||| |||||||
Sbjct: 149073 atcattaac-tcgtatcttttggcaccaatatcatgaacatgtgtaacactacgatcgag 149015
Query: 406 atccaatgaaccatt 420
|| |||| |||||||
Sbjct: 149014 attcaataaaccatt 149000
Score = 60.0 bits (30), Expect = 3e-06
Identities = 94/114 (82%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 307 atgacccaaacggcagtgccacaaataagttgcactatcattattaactttgcatctttt 366
||||| ||| |||||||||||||| ||||| | ||| |||| || ||| | | |||||||
Sbjct: 246924 atgactcaagcggcagtgccacaagtaagtggtactgtcatcatcaac-tcgtatctttt 246866
Query: 367 ggtttcaatattatgaatatgtgtatcactatgatcgagatccaatgaaccatt 420
|| |||||| ||||| ||||||| ||||| ||||||||| |||| |||||||
Sbjct: 246865 ggcaccaatatcatgaacatgtgtaacactacgatcgagattcaataaaccatt 246812
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
Length = 77136
Score = 155 bits (78), Expect = 7e-35
Identities = 268/330 (81%), Gaps = 1/330 (0%)
Strand = Plus / Minus
Query: 40 ttcatcaagtagatatacccatatctgctcaaatcatcttgtgaaggtcaaaaaataacg 99
||||||||||||||||||||||| || ||||||||||| |||| || | || ||||||
Sbjct: 34880 ttcatcaagtagatatacccatacctactcaaatcatcg-gtgagagtgagaacataacg 34822
Query: 100 atacttgccacgagcatcaacactcattggatcgcatacatcggtgtgtattatttccaa 159
||| || ||||| |||| |||||||| | || ||||| || ||||||||||||||
Sbjct: 34821 ataaccaccgcgagcttcaatgttcattggaccacacacatcagtatgtattatttccaa 34762
Query: 160 taagtcagtagctcattccattattctggagaacggagttttagtcatcttgcctaaaag 219
|||||| || |||| |||||||||| ||||| ||||| |||||||||||||| | ||
Sbjct: 34761 taagtcggttgctctctccattattcctgagaatggagtcttagtcatcttgcccatgag 34702
Query: 220 gcacggttcgcaagcatcaaatgattcataaccaagtgattccgaaaatccatctttatg 279
|||||||||||| | |||||||||||| | |||| || || | | |||||| ||||
Sbjct: 34701 gcacggttcgcatgtgtcaaatgattcaaagtcaagagactctaatagtccatcagtatg 34642
Query: 280 gagtttcttcatgcgctttacaccgatatgacccaaacggcagtgccacaaataagttgc 339
||| ||||||||| |||| || ||||||||||| | ||| |||||||||| || || |
Sbjct: 34641 gagcttcttcatgtgcttaacgccgatatgaccaaggcggtagtgccacaagtatgtgga 34582
Query: 340 actatcattattaactttgcatcttttggt 369
||||||||||| |||||| |||||||||||
Sbjct: 34581 actatcattatcaactttacatcttttggt 34552
Score = 141 bits (71), Expect = 1e-30
Identities = 148/171 (86%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 486 ttaaatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaac 545
|||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct: 70049 ttaaatgaataatcgtattgcaataaacacgatccaatcatgttcatgctcaacgcaaac 70108
Query: 546 accaaataacacttatttagtttcaacactaatcccgaaag-atagggagtgtgcaatg- 603
||||||||||| |||||||| || ||||| |||||||| | | |||||| |||| |||
Sbjct: 70109 accaaataacaattatttaggtttaacaccaatcccgatggtagagggagcgtgcgatgt 70168
Query: 604 atgatcatatcaatcttggaactacttccaacacacatcgtcacctcgcct 654
|||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 70169 ttgatcacatcaaccttggaaacacttccaacacttatcgtcacctcgcct 70219
Score = 91.7 bits (46), Expect = 9e-16
Identities = 98/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 307 atgacccaaacggcagtgccacaaataagttgcactatcattattaactttgcatctttt 366
||||| ||| |||||||||||||| ||||| | ||||||||||||| ||||| |||||||
Sbjct: 69895 atgactcaagcggcagtgccacaagtaagtggtactatcattatta-ctttgtatctttt 69953
Query: 367 ggtttcaatattatgaatatgtgtatcactatgatcgagatccaatgaaccatt 420
|| |||||||||||| ||||||| ||||| || |||||| |||| |||||||
Sbjct: 69954 ggcaccaatattatgaacatgtgtaacactacgaacgagattcaataaaccatt 70007
Score = 89.7 bits (45), Expect = 3e-15
Identities = 118/141 (83%), Gaps = 1/141 (0%)
Strand = Plus / Plus
Query: 252 caagtgattccgaaaatccatctttatggagtttcttcatgcgctttacaccgatatgac 311
||||||| ||| ||| |||||| |||||||||||||||||||||||||||| || ||||
Sbjct: 20327 caagtgactccaaaagtccatcggtatggagtttcttcatgcgctttacaccaatttgac 20386
Query: 312 ccaaacggcagtgccacaaataagttgcactatcattattaactttgcatcttttggttt 371
| || ||||||||||| ||| | | || |||||||| |||||| | ||||||||| |
Sbjct: 20387 ctaagcggcagtgccataaa-acatggcgctatcattgttaactctaactcttttggtct 20445
Query: 372 caatattatgaatatgtgtat 392
|||| ||||| ||||||||||
Sbjct: 20446 caatgttatgtatatgtgtat 20466
>dbj|AB061328.1| Avena sativa LTR-retrotransposon OARE-1 gag-pol pseudogene mRNA for
polyprotein
Length = 3528
Score = 143 bits (72), Expect = 3e-31
Identities = 192/232 (82%)
Strand = Plus / Minus
Query: 132 cgcatacatcggtgtgtattatttccaataagtcagtagctcattccattattctggaga 191
||||||||||||| ||||| |||||||| ||||| || |||| ||||| || | |||||
Sbjct: 1649 cgcatacatcggtatgtatgatttccaacaagtccgttgctcgctccatcataccggaga 1590
Query: 192 acggagttttagtcatcttgcctaaaaggcacggttcgcaagcatcaaatgattcataac 251
|||| ||||| |||||||||| | ||||| |||||||| | |||||||||||| ||
Sbjct: 1589 acggtgttttgatcatcttgcccatgaggcatggttcgcatgtgtcaaatgattcaaaat 1530
Query: 252 caagtgattccgaaaatccatctttatggagtttcttcatgcgctttacaccgatatgac 311
|||| || ||| ||| |||||| |||||||||||||||||||||||| || |||||||
Sbjct: 1529 caagagactccaaaagtccatcagaatggagtttcttcatgcgctttactccaatatgac 1470
Query: 312 ccaaacggcagtgccacaaataagttgcactatcattattaactttgcatct 363
| | ||| ||||||||||||||||| | | ||||| ||| |||||||||||
Sbjct: 1469 ctagacgacagtgccacaaataagtagtattatcactatctactttgcatct 1418
Score = 83.8 bits (42), Expect = 2e-13
Identities = 126/152 (82%), Gaps = 4/152 (2%)
Strand = Plus / Minus
Query: 436 accatataaggttttattcatgtaaacagaacaacaatttattctcttacttaaatgaat 495
|||||| ||| | ||| |||| |||| |||||||| ||| |||||| | ||||||||||
Sbjct: 1339 accataaaagatgttactcatataaatagaacaaccatt-attctccgatttaaatgaat 1281
Query: 496 aaccgtattgcaataaacatgat---gaaatcatattcatgctcaacgcaaacaccaaat 552
|||||| |||||||||||| ||| ||||| || ||||||||||||||| |||| ||
Sbjct: 1280 aaccgtcttgcaataaacacgatccagaaataatgttcatgctcaacgcagacacattat 1221
Query: 553 aacacttatttagtttcaacactaatcccgaa 584
|||||||||| || || || ||||||||||||
Sbjct: 1220 aacacttattaaggtttaaaactaatcccgaa 1189
Score = 56.0 bits (28), Expect = 5e-05
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatct 65
||||||| ||||||||||| || |||||||||||||||||
Sbjct: 1754 tttcagatttatgtttcattaaatagatatacccatatct 1715
>dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag-pol pseudogene for
polyprotein
Length = 8665
Score = 143 bits (72), Expect = 3e-31
Identities = 192/232 (82%)
Strand = Plus / Minus
Query: 132 cgcatacatcggtgtgtattatttccaataagtcagtagctcattccattattctggaga 191
||||||||||||| ||||| |||||||| ||||| || |||| ||||| || | |||||
Sbjct: 4440 cgcatacatcggtatgtatgatttccaacaagtccgttgctcgctccatcataccggaga 4381
Query: 192 acggagttttagtcatcttgcctaaaaggcacggttcgcaagcatcaaatgattcataac 251
|||| ||||| |||||||||| | ||||| |||||||| | |||||||||||| ||
Sbjct: 4380 acggtgttttgatcatcttgcccatgaggcatggttcgcatgtgtcaaatgattcaaaat 4321
Query: 252 caagtgattccgaaaatccatctttatggagtttcttcatgcgctttacaccgatatgac 311
|||| || ||| ||| |||||| |||||||||||||||||||||||| || |||||||
Sbjct: 4320 caagagactccaaaagtccatcagaatggagtttcttcatgcgctttactccaatatgac 4261
Query: 312 ccaaacggcagtgccacaaataagttgcactatcattattaactttgcatct 363
| | ||| ||||||||||||||||| | | ||||| ||| |||||||||||
Sbjct: 4260 ctagacgacagtgccacaaataagtagtattatcactatctactttgcatct 4209
Score = 83.8 bits (42), Expect = 2e-13
Identities = 126/152 (82%), Gaps = 4/152 (2%)
Strand = Plus / Minus
Query: 436 accatataaggttttattcatgtaaacagaacaacaatttattctcttacttaaatgaat 495
|||||| ||| | ||| |||| |||| |||||||| ||| |||||| | ||||||||||
Sbjct: 4130 accataaaagatgttactcatataaatagaacaaccatt-attctccgatttaaatgaat 4072
Query: 496 aaccgtattgcaataaacatgat---gaaatcatattcatgctcaacgcaaacaccaaat 552
|||||| |||||||||||| ||| ||||| || ||||||||||||||| |||| ||
Sbjct: 4071 aaccgtcttgcaataaacacgatccagaaataatgttcatgctcaacgcagacacattat 4012
Query: 553 aacacttatttagtttcaacactaatcccgaa 584
|||||||||| || || || ||||||||||||
Sbjct: 4011 aacacttattaaggtttaaaactaatcccgaa 3980
Score = 56.0 bits (28), Expect = 5e-05
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatct 65
||||||| ||||||||||| || |||||||||||||||||
Sbjct: 4545 tttcagatttatgtttcattaaatagatatacccatatct 4506
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement
Length = 13271
Score = 115 bits (58), Expect = 6e-23
Identities = 170/206 (82%), Gaps = 1/206 (0%)
Strand = Plus / Minus
Query: 26 tttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaag 85
|||||||||| || ||||||||||||| ||| |||||||| |||||||| || ||||||
Sbjct: 4992 tttcagacttgtgcttcatcaagtagacataaccatatctactcaaatcgtca-gtgaag 4934
Query: 86 gtcaaaaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtg 145
|| | ||||||| |||| || || || || |||||||| ||||| || ||||||||
Sbjct: 4933 gtgagaaaataatgatatccgctgcgtgcctccacactcatcggatcacacacatcggta 4874
Query: 146 tgtattatttccaataagtcagtagctcattccattattctggagaacggagttttagtc 205
||||| |||||||| |||||| | || | |||||| ||| |||||||||||||||||||
Sbjct: 4873 tgtatgatttccaacaagtcacttgcacgctccattgttccggagaacggagttttagtc 4814
Query: 206 atcttgcctaaaaggcacggttcgca 231
|||||||| | ||||| ||||||||
Sbjct: 4813 atcttgcccatgaggcatggttcgca 4788
Score = 105 bits (53), Expect = 6e-20
Identities = 119/141 (84%)
Strand = Plus / Minus
Query: 252 caagtgattccgaaaatccatctttatggagtttcttcatgcgctttacaccgatatgac 311
||||||| ||| ||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 4782 caagtgactccaaaagtccatcggtatggagtttcttcatgcgctttacaccaatatgac 4723
Query: 312 ccaaacggcagtgccacaaataagttgcactatcattattaactttgcatcttttggttt 371
| || ||||||||||| ||| | | || |||||||| |||||| | ||||||||| |
Sbjct: 4722 ctaagcggcagtgccataaaaacatggcgctatcattgttaactctaactcttttggtct 4663
Query: 372 caatattatgaatatgtgtat 392
|||| ||||| ||||||||||
Sbjct: 4662 caatgttatgtatatgtgtat 4642
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
sequence
Length = 113510
Score = 109 bits (55), Expect = 4e-21
Identities = 144/171 (84%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 486 ttaaatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaac 545
|||||||||||| |||||||||||||||| ||| |||||| |||||||| ||||||| |
Sbjct: 70175 ttaaatgaataatcgtattgcaataaacacgatccaatcatgttcatgcttaacgcaagc 70234
Query: 546 accaaataacacttatttagtttcaacactaatcccgaaag-atagggagtgtgcaatg- 603
|||||||||| |||||||| || ||||| |||||||| | | |||||| |||| | |
Sbjct: 70235 accaaataacgattatttaggtttaacaccaatcccgatggtagagggagcgtgcgacgt 70294
Query: 604 atgatcatatcaatcttggaactacttccaacacacatcgtcacctcgcct 654
|||||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 70295 ttgatcatatcaacgttggaaacacttccaacacgtatcgtcacctcgcct 70345
Score = 109 bits (55), Expect = 4e-21
Identities = 145/171 (84%), Gaps = 3/171 (1%)
Strand = Plus / Plus
Query: 486 ttaaatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaac 545
|||||||||||| ||||||||| ||||| ||| |||||| |||||||||||||||| |
Sbjct: 112105 ttaaatgaataat-gtattgcaacaaacacgatccaatcatgttcatgctcaacgcaacc 112163
Query: 546 accaaataacacttatttagtttcaacactaatcccgaaag-atagggagtgtgcaatg- 603
||||||||||| |||||||| || ||||| |||||||| | | |||||| |||| | |
Sbjct: 112164 accaaataacaattatttaggtttaacaccaatcccgatggtagagggagcgtgcgacgt 112223
Query: 604 atgatcatatcaatcttggaactacttccaacacacatcgtcacctcgcct 654
|||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 112224 ttgatcatatcaaccttggaaacacttccaacacgtatcgtcacctcgcct 112274
Score = 95.6 bits (48), Expect = 6e-17
Identities = 121/144 (84%), Gaps = 1/144 (0%)
Strand = Plus / Plus
Query: 277 atggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgccacaaataagt 336
|||||| |||||||||| |||||||| | ||||| ||| ||||||||||||| |||||
Sbjct: 111922 atggagcttcttcatgcattttacaccaacatgactcaaggggcagtgccacaactaagt 111981
Query: 337 tgcactatcattattaactttgcatcttttggtttcaatattatgaatatgtgtatcact 396
| |||||||||||| ||||| ||||||||| ||||||||||| ||||||| ||||
Sbjct: 111982 ggtactatcattatt-actttttatcttttggcactaatattatgaacatgtgtaacact 112040
Query: 397 atgatcgagatccaatgaaccatt 420
| ||||||||| |||| |||||||
Sbjct: 112041 acgatcgagattcaataaaccatt 112064
Score = 75.8 bits (38), Expect = 5e-11
Identities = 96/114 (84%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 307 atgacccaaacggcagtgccacaaataagttgcactatcattattaactttgcatctttt 366
||||| ||| |||||||||||||| ||||| | |||||||| |||||| | | |||||||
Sbjct: 70021 atgactcaagcggcagtgccacaagtaagtggtactatcatcattaac-tcgtatctttt 70079
Query: 367 ggtttcaatattatgaatatgtgtatcactatgatcgagatccaatgaaccatt 420
|| |||||| ||||| ||||||| ||||| ||||||||| |||| |||||||
Sbjct: 70080 ggcaccaatatcatgaacatgtgtaacactacgatcgagattcaataaaccatt 70133
>emb|AJ279072.1|HVU279072 Hordeum vulgare BARE-2 and partial BAGY-2 retrotransposons
Length = 19906
Score = 109 bits (55), Expect = 4e-21
Identities = 144/171 (84%), Gaps = 2/171 (1%)
Strand = Plus / Minus
Query: 486 ttaaatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaac 545
|||||||||||| |||||||||||||||| || |||||| |||||| | ||||||| |
Sbjct: 7775 ttaaatgaataatcgtattgcaataaacacgacccaatcatgttcatgtttaacgcaagc 7716
Query: 546 accaaataacacttatttagtttcaacactaatcccga-aagatagggagtgtgcaatg- 603
|| |||||||| |||||||| || ||||| |||||||| | | |||||| |||| | |
Sbjct: 7715 acgaaataacaattatttaggtttaacaccaatcccgatgatagagggagcgtgcgacgt 7656
Query: 604 atgatcatatcaatcttggaactacttccaacacacatcgtcacctcgcct 654
|||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 7655 ttgatcatatcaatcttggaaacacttccaacacgtatcgtcacctcgcct 7605
Score = 63.9 bits (32), Expect = 2e-07
Identities = 87/104 (83%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 317 cggcagtgccacaaataagttgcactatcattattaactttgcatcttttggtttcaata 376
|||||||||||||| ||||| | |||||||| || ||| | | ||||||||| |||||
Sbjct: 7919 cggcagtgccacaagtaagtggtactatcatcatcaac-tcgtatcttttggcaccaata 7861
Query: 377 ttatgaatatgtgtatcactatgatcgagatccaatgaaccatt 420
| ||||| ||||||| ||||| ||||||||| |||| |||||||
Sbjct: 7860 tcatgaacatgtgtaacactacgatcgagattcaataaaccatt 7817
>gb|AF339051.1|AF339051 Triticum monococcum WIS-2-1A Ty1-copia-like retrotransposon, complete
sequence
Length = 9682
Score = 95.6 bits (48), Expect = 6e-17
Identities = 137/164 (83%), Gaps = 2/164 (1%)
Strand = Plus / Minus
Query: 485 cttaaatgaataaccgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaa 544
|||||||||||||||||||||||||| |||| || |||||| | ||| ||||||||||
Sbjct: 4868 cttaaatgaataaccgtattgcaatagacataatccaatcatgtctatgttcaacgcaaa 4809
Query: 545 caccaaataacacttatttagtttcaacactaatcccgaaag-atagggagtgtgcaatg 603
|||||||||||| ||||||| || ||||| |||| ||| | | |||||| |||| |||
Sbjct: 4808 caccaaataacaattatttaagtttaacacaaatctcgatggtagagggagcgtgcgatg 4749
Query: 604 -atgatcatatcaatcttggaactacttccaacacacatcgtca 646
|||||||||||| |||||| |||||||||||| |||||||
Sbjct: 4748 cttgatcatatcaacattggaaacacttccaacacatatcgtca 4705
Score = 52.0 bits (26), Expect = 8e-04
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 379 atgaatatgtgtatcactatgatcgagatccaatgaaccatt 420
||||| ||||||||||||| ||||||||| |||| |||||||
Sbjct: 4970 atgaacatgtgtatcactacgatcgagattcaataaaccatt 4929
>emb|X63184.1|TAWIS21A T.aestivum DNA for Wis-2-1A retrotransposon-like element
Length = 5114
Score = 87.7 bits (44), Expect = 1e-14
Identities = 217/270 (80%), Gaps = 6/270 (2%)
Strand = Plus / Minus
Query: 379 atgaatatgtgtatcactatgatcgagatccaatgaaccattttcattgggtgtgtaacc 438
||||| ||||||||||||| ||||||||| ||| ||||||| || ||||| |||
Sbjct: 2485 atgaacatgtgtatcactacgatcgagatttaataaaccattcattttaggtgtaagacc 2426
Query: 439 atataaggttttattcatgtaaacagaacaacaatttattctcttacttaaatgaataac 498
|| ||||| ||||||| |||||||| ||| | |||||||| ||||||||||||||
Sbjct: 2425 attgaaggtattattcaaataaacagagtaacca-ttattctc---cttaaatgaataac 2370
Query: 499 cgtattgcaataaacatgatgaaatcatattcatgctcaacgcaaacaccaaataacact 558
|||||||| ||| || | || |||||| | |||||||||||||||||||||||||| |
Sbjct: 2369 cgtattgcgatagacgtaatccaatcatgtctatgctcaacgcaaacaccaaataacaat 2310
Query: 559 tatttagtttcaacactaatcccgaaag-atagggagtgtgcaatg-atgatcatatcaa 616
||||||| || ||||| |||| | | | |||||| |||| ||| ||||||||||||
Sbjct: 2309 tatttaggtttaacaccaatctctttggtagagggagcgtgcgatgcttgatcatatcaa 2250
Query: 617 tcttggaactacttccaacacacatcgtca 646
||||||| |||||||||||| |||||||
Sbjct: 2249 gcttggaaaaacttccaacacatatcgtca 2220
Score = 56.0 bits (28), Expect = 5e-05
Identities = 79/96 (82%)
Strand = Plus / Minus
Query: 254 agtgattccgaaaatccatctttatggagtttcttcatgcgctttacaccgatatgaccc 313
||||| ||| || ||||||| ||||||| ||||||||||| |||| |||||||||||
Sbjct: 2593 agtgagtccaaagatccatcaatatggagcttcttcatgcgttttataccgatatgactt 2534
Query: 314 aaacggcagtgccacaaataagttgcactatcatta 349
| ||||||||||||| || || | ||||||||||
Sbjct: 2533 acgtggcagtgccacaagtaggtggtactatcatta 2498
>emb|AJ269530.1|AST269530 Avena strigosa Ty1-copia retrotransposon TAS1:GAG, AP and IN regions
Length = 2264
Score = 69.9 bits (35), Expect = 3e-09
Identities = 111/135 (82%), Gaps = 1/135 (0%)
Strand = Plus / Minus
Query: 31 gacttatgtttcatcaagtagatatacccatatctgctcaaatcatcttgtgaaggtcaa 90
|||||||||||||| || ||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 1995 gacttatgtttcatgaaatagatatacccatatctactcaagtcatc-cgtgaaggtaag 1937
Query: 91 aaaataacgatacttgccacgagcatcaacactcattggatcgcatacatcggtgtgtat 150
|| ||||||||| || || | | |||||||||||| | || |||||||| |||||
Sbjct: 1936 aacataacgataaccaccgcgcgatgctacactcattggaccacacacatcggtatgtat 1877
Query: 151 tatttccaataagtc 165
||||||||||||||
Sbjct: 1876 gatttccaataagtc 1862
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 277 atggagtttcttcatgcgctttacaccgatatgacccaaacggcagtgccaca 329
||||||||||||||||||||| || || || ||||| | ||| ||||||||||
Sbjct: 1750 atggagtttcttcatgcgcttcactccaatgtgaccaagacgacagtgccaca 1698
>gb|AF391808.2| Zea mays chromosome 9S bz genomic region strain McC
Length = 226001
Score = 61.9 bits (31), Expect = 8e-07
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 27 ttcagacttatgtttcatcaagtagatatacccatatctgctcaaatcatc 77
||||||||| |||||||| ||||||| |||||||||||| || ||||||||
Sbjct: 48918 ttcagacttgtgtttcattaagtagacatacccatatctactaaaatcatc 48968
Score = 44.1 bits (22), Expect = 0.18
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 284 ttcttcatgcgctttacaccgatatgacccaaacggcagtgccaca 329
||||||||||| || ||| |||||||||||||| ||||||||||
Sbjct: 49174 ttcttcatgcgattctcacttatatgacccaaacgacagtgccaca 49219
>gb|AF120181.1|AF120181 Triticum aestivum cultivar Chinese Spring RAPD-generated marker
sequence amplified with OPI06
Length = 763
Score = 61.9 bits (31), Expect = 8e-07
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 317 cggcagtgccacaaataagttgcactatcattattaactttgcatcttttggtttcaata 376
|||||||||||||| || || | |||||| |||| |||||| ||||||||||| | | |
Sbjct: 759 cggcagtgccacaagtatgtgggactatcgttatcaactttacatcttttggtattcaca 700
Query: 377 ttatgaatatgtgtatcactatgatcgagat 407
|||||||||||||| || |||| |||||||
Sbjct: 699 ctatgaatatgtgtaacattatgttcgagat 669
>gb|AC110794.3| Homo sapiens chromosome 4 clone RP11-598O12, complete sequence
Length = 148841
Score = 42.1 bits (21), Expect = 0.72
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 ttgtgaaggtcaaaaaataac 98
|||||||||||||||||||||
Sbjct: 143082 ttgtgaaggtcaaaaaataac 143102
>emb|AL354749.6|AL354749 Human DNA sequence from clone RP11-156D10 on chromosome 10, complete
sequence [Homo sapiens]
Length = 196000
Score = 42.1 bits (21), Expect = 0.72
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 359 catcttttggtttcaatatta 379
|||||||||||||||||||||
Sbjct: 129763 catcttttggtttcaatatta 129783
>emb|AL157826.8|AL157826 Human DNA sequence from clone RP11-176P17 on chromosome 9p22.3-24.1.
Contains STSs and GSSs, complete sequence [Homo sapiens]
Length = 149087
Score = 42.1 bits (21), Expect = 0.72
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 352 aactttgcatcttttggtttc 372
|||||||||||||||||||||
Sbjct: 93104 aactttgcatcttttggtttc 93084
>gb|AE012996.1| Thermoanaerobacter tengcongensis strain MB4T, section 23 of 244 of
the complete genome
Length = 12699
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 460 aacagaacaacaatttattc 479
||||||||||||||||||||
Sbjct: 1017 aacagaacaacaatttattc 1036
>ref|NG_000004.1| Homo sapiens genomic cytochrome P450, subfamily IIIA (niphedipine
oxidase) (CYP3A) on chromosome 7
Length = 414805
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 201 tagtcatcttgcctaaaagg 220
||||||||||||||||||||
Sbjct: 304786 tagtcatcttgcctaaaagg 304767
>gb|AC106854.5| Homo sapiens chromosome 18, clone CTD-2302G2, complete sequence
Length = 116879
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 504 tgcaataaacatgatgaaat 523
||||||||||||||||||||
Sbjct: 12246 tgcaataaacatgatgaaat 12265
>gb|AC012467.9| Homo sapiens chr3 BAC RP11-884K10 (Roswell Park Cancer Institute Human
BAC Library) complete sequence
Length = 177072
Score = 40.1 bits (20), Expect = 2.9
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 354 ctttgcatcttttggtttcaatattatg 381
|||||||||||||| ||| |||||||||
Sbjct: 19567 ctttgcatcttttgattttaatattatg 19594
>ref|NM_121061.1| Arabidopsis thaliana chromosome 5 clone CHR5v12152001
Length = 1005
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 603 gatgatcatatcaatcttgg 622
||||||||||||||||||||
Sbjct: 123 gatgatcatatcaatcttgg 142
>gb|AC020650.11| Homo sapiens 3 BAC RP11-165B13 (Roswell Park Cancer Institute Human BAC
Library) complete sequence
Length = 74000
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 472 atttattctcttacttaaat 491
||||||||||||||||||||
Sbjct: 50543 atttattctcttacttaaat 50524
>gb|AC008774.7| Homo sapiens chromosome 5 clone CTD-2018M7, complete sequence
Length = 128781
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 465 aacaacaatttattctctta 484
||||||||||||||||||||
Sbjct: 99917 aacaacaatttattctctta 99898
>gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15, complete sequence
Length = 158094
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 465 aacaacaatttattctctta 484
||||||||||||||||||||
Sbjct: 101996 aacaacaatttattctctta 102015
>gb|AY014799.1| Arabidopsis thaliana chromosome 5
Length = 1005
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 603 gatgatcatatcaatcttgg 622
||||||||||||||||||||
Sbjct: 123 gatgatcatatcaatcttgg 142
>gb|AC009426.8|AC009426 Homo sapiens, clone RP11-45H19, complete sequence
Length = 154313
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 559 tatttagtttcaacactaat 578
||||||||||||||||||||
Sbjct: 150620 tatttagtttcaacactaat 150639
>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III clone F17A9 map mi357, complete
sequence
Length = 90142
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 359 catcttttggtttcaatatt 378
||||||||||||||||||||
Sbjct: 62762 catcttttggtttcaatatt 62743
>gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell Park Cancer Institute Mouse BAC
Library) complete sequence
Length = 204394
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 443 aaggttttattcatgtaaac 462
||||||||||||||||||||
Sbjct: 49429 aaggttttattcatgtaaac 49448
>gb|AC005020.5|AC005020 Homo sapiens BAC clone GS1-259H13 from 7, complete sequence
Length = 177531
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 201 tagtcatcttgcctaaaagg 220
||||||||||||||||||||
Sbjct: 67512 tagtcatcttgcctaaaagg 67493
>gb|AC012067.2|AC012067 Homo sapiens BAC clone RP11-192N14 from Y, complete sequence
Length = 164507
Score = 40.1 bits (20), Expect = 2.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 500 gtattgcaataaacatgatgaaat 523
|||||||| |||||||||||||||
Sbjct: 95073 gtattgcactaaacatgatgaaat 95050
>emb|AL157698.8|AL157698 Human DNA sequence from clone RP13-238N7 on chromosome Xq12-13.3,
complete sequence [Homo sapiens]
Length = 143638
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 452 ttcatgtaaacagaacaaca 471
||||||||||||||||||||
Sbjct: 607 ttcatgtaaacagaacaaca 626
>emb|AL159972.8|AL159972 Human DNA sequence from clone RP11-157H4 on chromosome 13, complete
sequence [Homo sapiens]
Length = 149512
Score = 40.1 bits (20), Expect = 2.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 469 acaatttattctcttacttaaatg 492
||||||||||||| ||||||||||
Sbjct: 21696 acaatttattctcctacttaaatg 21673
>gb|AC004072.1|AC004072 Human Chromosome X clone bWXD342, complete sequence [Homo sapiens]
Length = 170658
Score = 40.1 bits (20), Expect = 2.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 500 gtattgcaataaacatgatgaaat 523
|||||||| |||||||||||||||
Sbjct: 58822 gtattgcactaaacatgatgaaat 58845
>emb|AL121968.10|HSJ196B13 Human DNA sequence from clone RP1-196B13 on chromosome 6q22.2-22.33
Contains GSSs and STSs, complete sequence [Homo sapiens]
Length = 124219
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 559 tatttagtttcaacactaat 578
||||||||||||||||||||
Sbjct: 118285 tatttagtttcaacactaat 118266
>emb|AL360334.1|ATF18D22 Arabidopsis thaliana DNA chromosome 5, BAC clone F18D22 (ESSA project)
Length = 57180
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 603 gatgatcatatcaatcttgg 622
||||||||||||||||||||
Sbjct: 15697 gatgatcatatcaatcttgg 15678
>emb|AL356332.1|ATT31P16 Arabidopsis thaliana DNA chromosome 5, BAC clone T31P16 (ESSA project)
Length = 80088
Score = 40.1 bits (20), Expect = 2.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 603 gatgatcatatcaatcttgg 622
||||||||||||||||||||
Sbjct: 75599 gatgatcatatcaatcttgg 75580
>emb|AL133321.11|AL133321 Human DNA sequence from clone RP13-17E1 on chromosome X. Contains STSs
and GSSs, complete sequence [Homo sapiens]
Length = 170805
Score = 40.1 bits (20), Expect = 2.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 500 gtattgcaataaacatgatgaaat 523
|||||||| |||||||||||||||
Sbjct: 149178 gtattgcactaaacatgatgaaat 149155
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,122,365
Number of Sequences: 1217082
Number of extensions: 2122365
Number of successful extensions: 42729
Number of sequences better than 10.0: 41
length of query: 654
length of database: 5,500,847,177
effective HSP length: 21
effective length of query: 633
effective length of database: 5,475,288,455
effective search space: 3465857592015
effective search space used: 3465857592015
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)