The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_A07_T7.seq Fgr-S3_1_A07_T7 LENGTH:645bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A07 ; CLONELIB: n/a
(645 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||T48325 hypothetical protein F15A17.70 - Arabidopsis th... 35 0.57
gb|AAD30040.1|AF129528_1 (AF129528) receptor protein-tyrosi... 33 2.8
gb|AAM09353.1| (AC117075) hypothetical protein [Dictyosteli... 32 6.3
>pir||T48325 hypothetical protein F15A17.70 - Arabidopsis thaliana
emb|CAB86071.1| (AL163002) putative protein [Arabidopsis thaliana]
Length = 445
Score = 35.0 bits (79), Expect = 0.57
Identities = 19/63 (30%), Positives = 29/63 (45%)
Frame = +2
Query: 62 MKRMNRLTSAFRHRDNNAWENNREVGQ*SSRNPKIKYWVPNKGLNDSSRGNCKNSNTGAK 241
M+R L ++ H+ N W+NN + G +P WVP K + N N N +
Sbjct: 229 MRRERALAYSYSHQQN--WKNNSKSGNPMFMDPSNPTWVPRKN-----KSNSNNDNAASV 281
Query: 242 RGS 250
+GS
Sbjct: 282 KGS 284
>gb|AAD30040.1|AF129528_1 (AF129528) receptor protein-tyrosine kinase; HTK28 [Hydra
magnipapillata]
Length = 134
Score = 32.7 bits (73), Expect = 2.8
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +2
Query: 71 MNRLTSAFRHRDN-----NAWENNREVGQ*SSRNPKIKYWVPNKGLNDSSRGNCKNSNT 232
+N L + +DN N NNRE + P+ W+P K ND S NC +N+
Sbjct: 56 LNFLKDSSMQQDNYWIGLNDASNNREFRWSDDKIPQFFNWLPKKPNNDQSEQNCVETNS 114
>gb|AAM09353.1| (AC117075) hypothetical protein [Dictyostelium discoideum]
Length = 740
Score = 31.6 bits (70), Expect = 6.3
Identities = 14/54 (25%), Positives = 26/54 (47%)
Frame = +2
Query: 53 NVNMKRMNRLTSAFRHRDNNAWENNREVGQ*SSRNPKIKYWVPNKGLNDSSRGN 214
N+N +N+ + + + +NN NN ++ NP++ P G N S+ N
Sbjct: 254 NINNNNINKNNNNYNNNNNNKNNNNNNNNNNNNNNPQLFSMEPPNGFNHSTTDN 307
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,435,759
Number of Sequences: 922381
Number of extensions: 6867037
Number of successful extensions: 20928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20889
length of database: 289,601,141
effective HSP length: 115
effective length of database: 183,527,326
effective search space used: 18169205274
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)