The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_A07_T7.seq Fgr-S3_1_A07_T7 LENGTH:645bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A07 ; CLONELIB: n/a
(645 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 48 0.012
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 44 0.18
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 44 0.18
dbj|AB060587.1|AB060588S2 Mus musculus BRINP gene for BMP/r... 44 0.18
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 42 0.71
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 42 0.71
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 42 0.71
emb|AL365207.17|AL365207 Human DNA sequence from clone RP11... 42 0.71
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 42 0.71
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 42 0.71
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 42 0.71
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 42 0.71
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 42 0.71
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 42 0.71
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 42 0.71
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 42 0.71
gb|AC067743.10| Homo sapiens chromosome 10 clone RP11-441P1... 40 2.8
gb|AC069549.5| Homo sapiens chromosome 10 clone RP11-575A19... 40 2.8
gb|AC040936.9| Homo sapiens chromosome 11, clone CTD-2140G1... 40 2.8
gb|AC017089.3|AC017089 Homo sapiens BAC clone RP11-500H5 fr... 40 2.8
emb|AL672292.8| Human DNA sequence from clone XXyac-39EC11 ... 40 2.8
gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hR... 40 2.8
emb|AL031653.5|HS1121J18 Human DNA sequence from clone RP5-... 40 2.8
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 40 2.8
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtactcgcaag 28
|||||||||||||||||||||| |||||
Sbjct: 32 gcgtggtcgcggccgaggtactggcaag 59
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtact 22
||||||||||||||||||||||
Sbjct: 57 gcgtggtcgcggccgaggtact 78
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtact 22
||||||||||||||||||||||
Sbjct: 20 gcgtggtcgcggccgaggtact 41
>dbj|AB060587.1|AB060588S2 Mus musculus BRINP gene for BMP/retinoic acid-inducible neural-specific
protein (BRINP), partial cds
Length = 16430
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 45 atataacaaatgtaaacatgaa 66
||||||||||||||||||||||
Sbjct: 10468 atataacaaatgtaaacatgaa 10447
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 864 gcgtggtcgcggccgaggtac 844
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 547 gcgtggtcgcggccgaggtac 527
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 529 gcgtggtcgcggccgaggtac 509
>emb|AL365207.17|AL365207 Human DNA sequence from clone RP11-420O24 on chromosome 1, complete
sequence [Homo sapiens]
Length = 182679
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 100 tagagataataatgcttggga 120
|||||||||||||||||||||
Sbjct: 3054 tagagataataatgcttggga 3034
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 421 gcgtggtcgcggccgaggtac 401
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 702 gcgtggtcgcggccgaggtac 682
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 447 gcgtggtcgcggccgaggtac 427
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 302 gcgtggtcgcggccgaggtac 282
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 3 gcgtggtcgcggccgaggtac 23
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 425 gcgtggtcgcggccgaggtac 405
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggtac 22
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 42.1 bits (21), Expect = 0.71
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 332 gcgtggtcgcggccgaggtac 312
>gb|AC067743.10| Homo sapiens chromosome 10 clone RP11-441P16, complete sequence
Length = 177795
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 390 aaaagaaataaaagacaaac 409
||||||||||||||||||||
Sbjct: 151743 aaaagaaataaaagacaaac 151762
>gb|AC069549.5| Homo sapiens chromosome 10 clone RP11-575A19, complete sequence
Length = 170554
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 390 aaaagaaataaaagacaaac 409
||||||||||||||||||||
Sbjct: 12428 aaaagaaataaaagacaaac 12447
>gb|AC040936.9| Homo sapiens chromosome 11, clone CTD-2140G10, complete sequence
Length = 143063
Score = 40.1 bits (20), Expect = 2.8
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 377 ataaagggcttataaaagaaataaaaga 404
|||||| | |||||||||||||||||||
Sbjct: 100193 ataaagcgtttataaaagaaataaaaga 100220
>gb|AC017089.3|AC017089 Homo sapiens BAC clone RP11-500H5 from 4, complete sequence
Length = 178320
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 388 ataaaagaaataaaagacaa 407
||||||||||||||||||||
Sbjct: 80953 ataaaagaaataaaagacaa 80934
>emb|AL672292.8| Human DNA sequence from clone XXyac-39EC11 on chromosome 6, complete
sequence [Homo sapiens]
Length = 128993
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 52 aaatgtaaacatgaagcgta 71
||||||||||||||||||||
Sbjct: 100551 aaatgtaaacatgaagcgta 100532
>gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.419_J_16, complete sequence
Length = 203591
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 389 taaaagaaataaaagacaaa 408
||||||||||||||||||||
Sbjct: 101152 taaaagaaataaaagacaaa 101133
>emb|AL031653.5|HS1121J18 Human DNA sequence from clone RP5-1121J18 on chromosome 20. Contains
ESTs, STS, GSSs, a ca repeat polymorphism and genomic
marker D20S115, complete sequence [Homo sapiens]
Length = 138145
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 534 aggaataacaattaaactgg 553
||||||||||||||||||||
Sbjct: 115234 aggaataacaattaaactgg 115253
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggta 21
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,939,832
Number of Sequences: 1217082
Number of extensions: 1939832
Number of successful extensions: 42306
Number of sequences better than 10.0: 24
length of query: 645
length of database: 5,500,847,177
effective HSP length: 21
effective length of query: 624
effective length of database: 5,475,288,455
effective search space: 3416579995920
effective search space used: 3416579995920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)