The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_A10_T7.seq Fgr-S3_1_A10_T7 LENGTH:544bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A10 ; CLONELIB: n/a
(544 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB98657.2| (AL390114) probable hypothetical 15.2 Kd pr... 34 0.67
gb|AAL12981.1|AF414409_3 (AF414409) minor structural protei... 33 1.1
gb|AAF58260.1| (AE003815) CG13942 gene product [Drosophila ... 33 1.1
pir||S28407 guanine nucleotide-exchange activator CDC25 hom... 32 2.5
gb|AAD04750.1| (U40394) unknown [Human herpesvirus 8] 32 2.5
gb|AAG27458.1|AF305694_1 (AF305694) latent nuclear antigen ... 32 2.5
ref|NP_572129.1| (NC_003409) ORF 73; extensive acidic domai... 32 2.5
gb|AAK50002.1| (AF360120) ORF73 [Human herpesvirus 8] 32 2.5
gb|AAF82408.1|AF220951_1 (AF220951) 8,8a-deoxyoleandolide s... 32 2.5
gb|AAB62657.1| (U93872) ORF 73, contains large complex repe... 32 2.5
ref|NP_035375.1| (NM_011245) RAS protein-specific guanine n... 32 2.5
gb|AAG01636.1| (AF192756) Orf73 [Human herpesvirus 8] 32 2.5
gb|AAD46501.1|AF148805_6 (AF148805) latent nuclear antigen ... 32 2.5
emb|CAD27470.1| (AL691402) putative glucoamylase; similar t... 32 3.3
ref|XP_110305.1| (XM_110305) similar to EG:25E8.4 gene prod... 32 3.3
ref|NP_281551.1| (NC_002163) lipoprotein signal peptidase [... 31 5.6
gb|AAA46509.1| (M64096) gag protein [Murine leukemia virus] 31 7.4
dbj|BAB14543.1| (AK023360) unnamed protein product [Homo sa... 31 7.4
sp|P28818|GNRP_RAT Guanine nucleotide releasing protein (GN... 31 7.4
prf||1814463A guanine nucleotide-releasing factor [Rattus n... 31 7.4
gb|AAL59029.1|AC087182_12 (AC087182) hypothetical protein [... 31 7.4
ref|NP_241331.1| (NC_002570) BH0465~unknown conserved prote... 31 7.4
ref|XP_039070.1| (XM_039070) KIAA1224 protein [Homo sapiens] 30 9.6
dbj|BAB03440.1| (AP002817) hypothetical protein [Oryza sati... 30 9.6
pir||S35047 mucin JUL7 - human >gi|407082|emb|CAA52408.1| (... 30 9.6
dbj|BAA86538.1| (AB033050) KIAA1224 protein [Homo sapiens] 30 9.6
emb|CAA52910.1| (X74955) mucin [Homo sapiens] 30 9.6
pir||T45025 mucin MUC5B, tracheobronchial [imported] - huma... 30 9.6
>emb|CAB98657.2| (AL390114) probable hypothetical 15.2 Kd protein [Leishmania major]
Length = 316
Score = 34.3 bits (77), Expect = 0.67
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -1
Query: 235 HCLSCPALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPP 101
HCLSC L SA P+ + GR+ PS SS G++T L + P
Sbjct: 104 HCLSCTLLTSAGAQEPDDVYGRSMPS--SSAVGAVTTELECAVVP 146
>gb|AAL12981.1|AF414409_3 (AF414409) minor structural protein [Norwalk-like virus
NLV/Gwynedd/273/1994/US]
Length = 257
Score = 33.5 bits (75), Expect = 1.1
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 5/70 (7%)
Frame = -1
Query: 220 PALASASY----NSPELLQGRNPPSQRSSTPGSI-TRCLRFSSPPPTAKSTGSSSLTNPI 56
P + SASY N L G +PPS S+ S+ T+ S S+ S+ T P
Sbjct: 124 PPMQSASYVNNQNRQPLKVGPSPPSSSGSSASSVKTQSTTLSGTSRVGSSSQSTLSTRPS 183
Query: 55 TLRSTWLRQR 26
T S W+R +
Sbjct: 184 TRTSDWVRSQ 193
>gb|AAF58260.1| (AE003815) CG13942 gene product [Drosophila melanogaster]
Length = 856
Score = 33.5 bits (75), Expect = 1.1
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = -1
Query: 190 PELLQGRNPPS--QRSSTPGSITRCLRFSSPPPTA 92
PE+LQ R PPS +R+ G+ TR + +PPPTA
Sbjct: 743 PEVLQPRPPPSPNRRNCFAGASTRRTTYEAPPPTA 777
>pir||S28407 guanine nucleotide-exchange activator CDC25 homolog - mouse
Length = 1260
Score = 32.3 bits (72), Expect = 2.5
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = -1
Query: 247 VNVVHCLSCPALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSL 68
++ + S L S+S+N+ +LL G P S R+S +FSSPPP A T S S
Sbjct: 688 MSAIPARSLELLFSSSHNA-KLLYGDAPKSPRASR--------KFSSPPPLAIGTSSPSR 738
Query: 67 TNPITL--------RSTWLRQRGCTS 14
++L ++ L GC+S
Sbjct: 739 RRKLSLNIPIITGGKALELASLGCSS 764
>gb|AAD04750.1| (U40394) unknown [Human herpesvirus 8]
Length = 416
Score = 32.3 bits (72), Expect = 2.5
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = -1
Query: 220 PALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRST 41
P L+S + R PPSQ+++ P S T +PPP S S P TLRS
Sbjct: 146 PPLSSPTGRPDSSTPMRPPPSQQTTPPHSPT------TPPPEPPSKSSPDSLAPSTLRS- 198
Query: 40 WLRQRGCTS 14
LR+R +S
Sbjct: 199 -LRKRRLSS 206
>gb|AAG27458.1|AF305694_1 (AF305694) latent nuclear antigen [Human herpesvirus 8]
Length = 1036
Score = 32.3 bits (72), Expect = 2.5
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = -1
Query: 220 PALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRST 41
P L+S + R PPSQ+++ P S T +PPP S S P TLRS
Sbjct: 146 PPLSSPTGRPDSSTPMRPPPSQQTTPPHSPT------TPPPEPPSKSSPDSLAPSTLRS- 198
Query: 40 WLRQRGCTS 14
LR+R +S
Sbjct: 199 -LRKRRLSS 206
>ref|NP_572129.1| (NC_003409) ORF 73; extensive acidic domains, potential leucine
zipper; immediate early protein homolog [Human
herpesvirus 8]
gb|AAC55944.1| (U52064) Herpesvirus saimiri ORF73 homolog [Human herpesvirus 8]
gb|AAC57158.1| (U75698) ORF 73; extensive acidic domains, potential leucine
zipper; immediate early protein homolog [Human
herpesvirus 8]
Length = 1162
Score = 32.3 bits (72), Expect = 2.5
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = -1
Query: 220 PALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRST 41
P L+S + R PPSQ+++ P S T +PPP S S P TLRS
Sbjct: 146 PPLSSPTGRPDSSTPMRPPPSQQTTPPHSPT------TPPPEPPSKSSPDSLAPSTLRS- 198
Query: 40 WLRQRGCTS 14
LR+R +S
Sbjct: 199 -LRKRRLSS 206
>gb|AAK50002.1| (AF360120) ORF73 [Human herpesvirus 8]
Length = 1003
Score = 32.3 bits (72), Expect = 2.5
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = -1
Query: 220 PALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRST 41
P L+S + R PPSQ+++ P S T +PPP S S P TLRS
Sbjct: 146 PPLSSPTGRPDSSTPMRPPPSQQTTPPHSPT------TPPPEPPSKSSPDSLAPSTLRS- 198
Query: 40 WLRQRGCTS 14
LR+R +S
Sbjct: 199 -LRKRRLSS 206
>gb|AAF82408.1|AF220951_1 (AF220951) 8,8a-deoxyoleandolide synthase 1 [Streptomyces
antibioticus]
Length = 4150
Score = 32.3 bits (72), Expect = 2.5
Identities = 25/76 (32%), Positives = 32/76 (41%), Gaps = 13/76 (17%)
Frame = +3
Query: 3 VVAAEVQPLWRSHVDL-------------SVIGLVSEDDPVDLAVGGGEENLRHLVMEPG 143
VVA E +W VDL V+G ++++D LAV R LV PG
Sbjct: 2092 VVALEQPQIWGGLVDLPQHLDEDAGRRLVDVVGGLADED--QLAVRASSVLARRLVRTPG 2149
Query: 144 VLLRCDGGFRPWSSSG 191
+ G R WS SG
Sbjct: 2150 HRMSSQAGGREWSPSG 2165
>gb|AAB62657.1| (U93872) ORF 73, contains large complex repeat CR 73 [Human
herpesvirus 8]
Length = 1089
Score = 32.3 bits (72), Expect = 2.5
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = -1
Query: 220 PALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRST 41
P L+S + R PPSQ+++ P S T +PPP S S P TLRS
Sbjct: 146 PPLSSPTGRPDSSTPMRPPPSQQTTPPHSPT------TPPPEPPSKSSPDSLAPSTLRS- 198
Query: 40 WLRQRGCTS 14
LR+R +S
Sbjct: 199 -LRKRRLSS 206
>ref|NP_035375.1| (NM_011245) RAS protein-specific guanine nucleotide-releasing
factor 1; GRF beta; Ras guanine release factor beta; RAS
guanyl releasing protein 3 [Mus musculus]
sp|P27671|GNRP_MOUSE Guanine nucleotide releasing protein (GNRP) (Ras-specific
nucleotide exchange factor CDC25) (CDC25Mm)
gb|AAA02741.1| (L20899) CDC25 homolog [Mus musculus]
Length = 1262
Score = 32.3 bits (72), Expect = 2.5
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = -1
Query: 247 VNVVHCLSCPALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSL 68
++ + S L S+S+N+ +LL G P S R+S +FSSPPP A T S S
Sbjct: 690 MSAIPARSLELLFSSSHNA-KLLYGDAPKSPRASR--------KFSSPPPLAIGTSSPSR 740
Query: 67 TNPITL--------RSTWLRQRGCTS 14
++L ++ L GC+S
Sbjct: 741 RRKLSLNIPIITGGKALELASLGCSS 766
>gb|AAG01636.1| (AF192756) Orf73 [Human herpesvirus 8]
Length = 976
Score = 32.3 bits (72), Expect = 2.5
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = -1
Query: 220 PALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRST 41
P L+S + R PPSQ+++ P S T +PPP S S P TLRS
Sbjct: 146 PPLSSPTGRPDSSTPMRPPPSQQTTPPHSPT------TPPPEPPSKSSPDSLAPSTLRS- 198
Query: 40 WLRQRGCTS 14
LR+R +S
Sbjct: 199 -LRKRRLSS 206
>gb|AAD46501.1|AF148805_6 (AF148805) latent nuclear antigen [Human herpesvirus 8]
Length = 1129
Score = 32.3 bits (72), Expect = 2.5
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = -1
Query: 220 PALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRST 41
P L+S + R PPSQ+++ P S T +PPP S S P TLRS
Sbjct: 146 PPLSSPTGRPDSSTPMRPPPSQQTTPPHSPT------TPPPEPPSKSSPDSLAPSTLRS- 198
Query: 40 WLRQRGCTS 14
LR+R +S
Sbjct: 199 -LRKRRLSS 206
>emb|CAD27470.1| (AL691402) putative glucoamylase; similar to S. cerevisiae STA1;
similar to S. pombe SPBPJ4664.02 [Schizosaccharomyces
pombe]
Length = 800
Score = 32.0 bits (71), Expect = 3.3
Identities = 25/79 (31%), Positives = 36/79 (44%), Gaps = 7/79 (8%)
Frame = -1
Query: 220 PALASASYNSPELLQGRNPPSQRSSTPGSI-------TRCLRFSSPPPTAKSTGSSSLTN 62
P +++S ++P PP+ SST S T C +S PPT ST + T
Sbjct: 360 PPTSTSSTSTPP------PPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTV 413
Query: 61 PITLRSTWLRQRGCTSAAT 5
P T ST L CT++ +
Sbjct: 414 PPTSSSTPLTTTNCTTSTS 432
Score = 31.2 bits (69), Expect = 5.6
Identities = 24/65 (36%), Positives = 32/65 (48%), Gaps = 7/65 (10%)
Frame = -1
Query: 226 SCPALASASYNSPELLQGRNPPSQRSST-------PGSITRCLRFSSPPPTAKSTGSSSL 68
SC SAS +P + + + S S+T P + T C +S PPT GSSSL
Sbjct: 76 SCTTDTSAS--TPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTG---GSSSL 130
Query: 67 TNPIT 53
+ PIT
Sbjct: 131 STPIT 135
Score = 30.8 bits (68), Expect = 7.4
Identities = 20/45 (44%), Positives = 24/45 (52%), Gaps = 7/45 (15%)
Frame = -1
Query: 166 PPSQRSST-------PGSITRCLRFSSPPPTAKSTGSSSLTNPIT 53
PP+ SST P + T C +S PPT GSSSL+ PIT
Sbjct: 151 PPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTG---GSSSLSTPIT 192
>ref|XP_110305.1| (XM_110305) similar to EG:25E8.4 gene product [Mus musculus]
Length = 377
Score = 32.0 bits (71), Expect = 3.3
Identities = 22/71 (30%), Positives = 32/71 (44%), Gaps = 7/71 (9%)
Frame = -1
Query: 235 HCLSCPALASASYNSPELL-------QGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGS 77
HCL+ P + S S +P + SS+P S SSP P+ S+ S
Sbjct: 198 HCLNLPLSVNTSVGSTSAAAVASAASSSSSPSTSSSSSPSSS------SSPSPSPSSSSS 251
Query: 76 SSLTNPITLRS 44
SS ++P+ L S
Sbjct: 252 SSSSSPLPLPS 262
>ref|NP_281551.1| (NC_002163) lipoprotein signal peptidase [Campylobacter jejuni]
pir||G81378 lipoprotein signal peptidase (EC 3.4.23.36) Cj0361 [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB74197.1| (AL139075) lipoprotein signal peptidase [Campylobacter jejuni]
Length = 156
Score = 31.2 bits (69), Expect = 5.6
Identities = 16/48 (33%), Positives = 26/48 (53%)
Frame = -1
Query: 412 FRQQNSVLTVKYSFDS*IQF*QLSSEMSG*CILHLALCGYVFYVMYWR 269
FR Q+ L + Y+ ++ + F LS LHLAL G +F ++W+
Sbjct: 33 FRWQSEYLDLTYALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQ 80
>gb|AAA46509.1| (M64096) gag protein [Murine leukemia virus]
Length = 532
Score = 30.8 bits (68), Expect = 7.4
Identities = 19/44 (43%), Positives = 22/44 (49%), Gaps = 4/44 (9%)
Frame = -1
Query: 196 NSPELLQG----RNPPSQRSSTPGSITRCLRFSSPPPTAKSTGS 77
N P L +G R PP R S PG + LR + PP A ST S
Sbjct: 163 NLPPLPKGPVKKRRPPPPRYSPPGPMVSRLRGNRDPPAADSTTS 206
>dbj|BAB14543.1| (AK023360) unnamed protein product [Homo sapiens]
Length = 696
Score = 30.8 bits (68), Expect = 7.4
Identities = 17/37 (45%), Positives = 20/37 (53%)
Frame = -1
Query: 163 PSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPIT 53
PS+ S TP S T FS P ++ GSSS N IT
Sbjct: 16 PSKPSETPPSSTSSSAFSVMNPVIQAVGSSSAVNVIT 52
>sp|P28818|GNRP_RAT Guanine nucleotide releasing protein (GNRP) (P140 Ras-GRF)
pir||S29083 guanine-nucleotide-releasing protein - rat
emb|CAA47666.1| (X67241) P140 RAS-GRF [Rattus rattus]
Length = 1244
Score = 30.8 bits (68), Expect = 7.4
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = -1
Query: 247 VNVVHCLSCPALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSS-- 74
+ + S L S+S+N+ +LL G P S R+S +FSSPPP A T S
Sbjct: 684 ITAIPARSLELLFSSSHNT-KLLYGDAPKSPRASR--------KFSSPPPLAIGTSSPVR 734
Query: 73 ----SLTNPITL--RSTWLRQRGCTSAATT 2
SL PI ++ L GC S T
Sbjct: 735 RRKLSLNIPIITGGKALELASLGCPSDGYT 764
>prf||1814463A guanine nucleotide-releasing factor [Rattus norvegicus]
Length = 1244
Score = 30.8 bits (68), Expect = 7.4
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = -1
Query: 247 VNVVHCLSCPALASASYNSPELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSS-- 74
+ + S L S+S+N+ +LL G P S R+S +FSSPPP A T S
Sbjct: 684 ITAIPARSLELLFSSSHNT-KLLYGDAPKSPRASR--------KFSSPPPLAIGTSSPVR 734
Query: 73 ----SLTNPITL--RSTWLRQRGCTSAATT 2
SL PI ++ L GC S T
Sbjct: 735 RRKLSLNIPIITGGKALELASLGCPSDGYT 764
>gb|AAL59029.1|AC087182_12 (AC087182) hypothetical protein [Oryza sativa]
Length = 1099
Score = 30.8 bits (68), Expect = 7.4
Identities = 18/52 (34%), Positives = 23/52 (43%)
Frame = -2
Query: 156 SGAVPRAPSQDA*DFLPLLRQPSQPDHPH*PTQSR*DRHGFAKEVVPRPRPR 1
SG+ P APS A P P +P P + F+ V+PRP PR
Sbjct: 62 SGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPR 113
>ref|NP_241331.1| (NC_002570) BH0465~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB04184.1| (AP001508) BH0465~unknown conserved protein in others [Bacillus
halodurans]
Length = 318
Score = 30.8 bits (68), Expect = 7.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 18 VQPLWRSHVDLSVIGLVSEDDPVDLAVGGGEENLRH 125
++P WR ++ LS++GL + +GGGE +RH
Sbjct: 168 IKPTWRKNIFLSILGLA-------MIIGGGELVIRH 196
>ref|XP_039070.1| (XM_039070) KIAA1224 protein [Homo sapiens]
Length = 618
Score = 30.4 bits (67), Expect = 9.6
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = -2
Query: 192 HRSCSKDETLHHSGAVPRAPSQDA*DFLPLLRQPSQ---PDHPH 70
H S LHHSGA P PSQ RQP Q HPH
Sbjct: 518 HPSSQSGPPLHHSGAPPPPPSQPP-------RQPPQAAPSSHPH 554
>dbj|BAB03440.1| (AP002817) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 180
Score = 30.4 bits (67), Expect = 9.6
Identities = 17/52 (32%), Positives = 26/52 (49%)
Frame = -1
Query: 190 PELLQGRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRSTWL 35
P L R+PP+ ++S P T+C S A+ SSS TN + + + L
Sbjct: 6 PPLTLRRHPPTPKTSLPMMPTKCSTASFNDGCARMAASSSHTNKVPIPTVTL 57
>pir||S35047 mucin JUL7 - human
emb|CAA52408.1| (X74370) mucin [Homo sapiens]
Length = 543
Score = 30.4 bits (67), Expect = 9.6
Identities = 19/58 (32%), Positives = 28/58 (47%)
Frame = -1
Query: 175 GRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRSTWLRQRGCTSAATT 2
G P + SSTPG+ ++ T STGS++ T T +TW+ T+A T
Sbjct: 186 GTGPTATPSSTPGTTWILTELTTTATTTASTGSTA-TLSSTPGTTWILTEPSTTATVT 242
>dbj|BAA86538.1| (AB033050) KIAA1224 protein [Homo sapiens]
Length = 635
Score = 30.4 bits (67), Expect = 9.6
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = -2
Query: 192 HRSCSKDETLHHSGAVPRAPSQDA*DFLPLLRQPSQ---PDHPH 70
H S LHHSGA P PSQ RQP Q HPH
Sbjct: 535 HPSSQSGPPLHHSGAPPPPPSQPP-------RQPPQAAPSSHPH 571
>emb|CAA52910.1| (X74955) mucin [Homo sapiens]
Length = 622
Score = 30.4 bits (67), Expect = 9.6
Identities = 19/58 (32%), Positives = 28/58 (47%)
Frame = -1
Query: 175 GRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRSTWLRQRGCTSAATT 2
G P + SSTPG+ ++ T STGS++ T T +TW+ T+A T
Sbjct: 235 GTGPTATPSSTPGTTWILTELTTTATTTASTGSTA-TLSSTPGTTWILTEPSTTATVT 291
>pir||T45025 mucin MUC5B, tracheobronchial [imported] - human (fragment)
emb|CAA96577.1| (Z72496) mucin MUC5B [Homo sapiens]
Length = 3570
Score = 30.4 bits (67), Expect = 9.6
Identities = 19/58 (32%), Positives = 28/58 (47%)
Frame = -1
Query: 175 GRNPPSQRSSTPGSITRCLRFSSPPPTAKSTGSSSLTNPITLRSTWLRQRGCTSAATT 2
G P + SSTPG+ ++ T STGS++ T T +TW+ T+A T
Sbjct: 3020 GTGPTATPSSTPGTTWILTELTTTATTTASTGSTA-TLSSTPGTTWILTEPSTTATVT 3076
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,859,702
Number of Sequences: 922381
Number of extensions: 5818970
Number of successful extensions: 17784
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 16687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17718
length of database: 289,601,141
effective HSP length: 113
effective length of database: 185,372,088
effective search space used: 12419929896
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)