The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_A11_T7.seq Fgr-S3_1_A11_T7 LENGTH:359bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A11 ; CLONELIB: n/a
(359 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL25171.1|AC079852_4 (AC079852) Putative TNP-like trans... 111 1e-24
gb|AAM18727.1|AC092548_5 (AC092548) putative TNP2-like tran... 79 1e-14
gb|AAK91322.1|AC090441_4 (AC090441) Putative transposase pr... 77 3e-14
gb|AAD55677.1| (AF136221) putative transposase protein [Zea... 73 7e-13
dbj|BAB64937.1| (AB071202) TdcA1-ORF1-ORF2 [Daucus carota] 68 2e-11
dbj|BAB64529.1| (AB070979) TdcA1-ORF2 [Daucus carota] 68 2e-11
ref|NP_178924.1| (NM_126880) putative TNP2-like transposon ... 63 5e-10
ref|NP_565367.1| (NM_127061) En/Spm-like transposon protein... 61 3e-09
ref|NP_567332.1| (NM_116876) may be a pseudogene [Arabidops... 58 2e-08
dbj|BAB02147.1| (AP000411) TNP2-like transposon protein-lik... 57 3e-08
gb|AAG60150.1|AC074360_15 (AC074360) En/Spm-like transposon... 56 6e-08
dbj|BAB64573.1| (AP003205) putative retrotransposable eleme... 56 6e-08
dbj|BAB44089.1| (AP003073) putative retrotransposable eleme... 56 6e-08
dbj|BAB90616.1| (AP003902) putative TNP2 [Oryza sativa (jap... 56 6e-08
gb|AAM01087.1|AC092748_25 (AC092748) Putative transposase [... 55 1e-07
gb|AAK13155.1|AC078829_7 (AC078829) putative transposase [O... 55 2e-07
gb|AAM01138.1|AC108884_20 (AC108884) Putative transposase [... 54 3e-07
gb|AAK95676.1|AC087723_9 (AC087723) Putative retrotransposa... 53 5e-07
gb|AAK92551.1|AC051624_9 (AC051624) Putative transposable e... 52 1e-06
gb|AAA66266.1| (M25427) unknown protein [Zea mays] 52 1e-06
pir||S29329 hypothetical protein 1 - maize transposon En-1 ... 52 1e-06
gb|AAK50418.1|AC021891_19 (AC021891) Putative transposable ... 51 2e-06
gb|AAL58240.1|AC084762_14 (AC084762) putative transposon pr... 51 2e-06
ref|NP_174991.1| (NM_103451) TNP2-like transposon protein [... 50 6e-06
gb|AAK92557.1|AC051624_15 (AC051624) Putative transposable ... 49 8e-06
ref|NP_178934.1| (NM_126890) putative TNP1-like transposon ... 49 1e-05
gb|AAD24042.2| (AF121139) RIM2 protein [Oryza sativa] 49 1e-05
dbj|BAB86564.1| (AP003710) putative TNP-like transposable e... 48 2e-05
dbj|BAB90570.1| (AP003794) putative TNP2-like transposable ... 48 2e-05
gb|AAK92611.1|AC078944_22 (AC078944) Putative transposable ... 48 2e-05
gb|AAL75729.1|AC091724_2 (AC091724) Putative TNP2-like tran... 48 2e-05
gb|AAK53832.1|AC011806_9 (AC011806) Putative TNP-like trans... 47 3e-05
gb|AAL31022.1|AC078948_6 (AC078948) hyothetical protein [Or... 47 3e-05
dbj|BAB63505.1| (AP003141) hypothetical protein~similar to ... 47 3e-05
gb|AAM08512.1|AC068654_14 (AC068654) Putative transposase [... 47 3e-05
gb|AAG17043.1|AF187822_1 (AF187822) transposase [Zea mays] 47 4e-05
dbj|BAB03186.1| (AP002058) En/Spm transposon protein-like [... 47 4e-05
gb|AAM08818.1|AC090486_28 (AC090486) Putative tnp2 transpos... 47 5e-05
gb|AAM00999.1|AC090482_28 (AC090482) Putative transposase [... 47 5e-05
gb|AAK00419.2|AC069324_5 (AC069324) Putative Tam1 transposo... 47 5e-05
gb|AAL77145.1|AC097447_11 (AC097447) Putative TNP-like tran... 47 5e-05
gb|AAK91331.1|AC090441_13 (AC090441) Putative retrotranspos... 46 7e-05
dbj|BAB09502.1| (AB006705) transposon protein-like [Arabido... 46 7e-05
gb|AAG52024.1|AC022456_5 (AC022456) Tam1 transposon protein... 45 1e-04
gb|AAM01003.1|AC090488_3 (AC090488) Putative transposable e... 45 1e-04
gb|AAK92644.1|AC079634_5 (AC079634) Putative transposable e... 45 2e-04
gb|AAG46071.1|AC079830_11 (AC079830) putative transposase p... 44 4e-04
gb|AAM01176.1|AC113336_28 (AC113336) Putative transposase [... 44 4e-04
gb|AAK38319.1|AC079029_20 (AC079029) putative transposon pr... 43 7e-04
gb|AAK92607.1|AC078944_18 (AC078944) Putative transposable ... 42 0.001
gb|AAK92600.1|AC078944_11 (AC078944) Putative transposable ... 42 0.001
gb|AAL75481.1|AF466202_7 (AF466202) putative TNP2 [Zea mays] 42 0.001
ref|NP_179111.1| (NM_127069) En/Spm-like transposon protein... 42 0.001
ref|NP_175072.1| (NM_103532) En/Spm-like transposon protein... 40 0.005
gb|AAM23249.1|AC092553_15 (AC092553) Putative transposase [... 40 0.006
gb|AAD27566.1|AF114171_7 (AF114171) TNP2-like protein [Sorg... 39 0.008
ref|NP_189765.1| (NM_114045) transposon-like ORF, putative ... 39 0.008
gb|AAK50407.1|AC021891_8 (AC021891) Putative transposable e... 39 0.008
gb|AAL83351.1|AC074282_18 (AC074282) Putative retrotranspos... 39 0.008
dbj|BAB55689.1| (AP003053) putative TNP2 [Oryza sativa (jap... 39 0.008
gb|AAM08552.1|AC092749_5 (AC092749) Putative TNP2 transposa... 39 0.011
gb|AAM08850.1|AC113337_14 (AC113337) Putative tnp2 transpos... 38 0.024
ref|NP_178951.1| (NM_126907) putative TNP2-like transposon ... 37 0.052
gb|AAF06087.1|AC007918_11 (AC007918) Similar to gi|4325351 ... 37 0.052
sp|P15551|NU4M_STRPU NADH-ubiquinone oxidoreductase chain 4... 37 0.052
ref|NP_006974.1|ND4_10181 (NC_001453) NADH dehydrogenase su... 37 0.052
pir||S01508 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) ch... 37 0.052
ref|NP_189616.1| (NM_113896) TNP2-like transposon protein, ... 36 0.068
gb|AAF79675.1|AC022314_16 (AC022314) F9C16.30 [Arabidopsis ... 36 0.068
sp|P34941|NU4M_ARBLI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4... 35 0.12
ref|NP_007351.1|ND4_11617 (NC_001770) NADH dehydrogenase su... 35 0.15
ref|NP_189691.1| (NM_113971) hypothetical protein [Arabidop... 35 0.20
ref|NP_192299.1| (NM_116628) putative transposon protein [A... 35 0.20
prf||1312307C NADH dehydrogenase 4 [Asterozoa] 35 0.20
ref|NP_008162.1|ND4_10513 (NC_001627) NADH dehydrogenase su... 35 0.20
gb|AAF69717.1|AC016041_22 (AC016041) F27J15.14 [Arabidopsis... 34 0.26
ref|NP_192540.1| (NM_116869) putative transposon protein [A... 33 0.44
sp|P12775|NU4M_PARLI NADH-ubiquinone oxidoreductase chain 4 33 0.44
gb|AAA68142.2| (J04815) NADH dehydrogenase subunit 4 [Parac... 33 0.44
ref|NP_008130.2|ND4_10421 (NC_001572) NADH dehydrogenase su... 33 0.44
ref|NP_189703.1| (NM_113983) hypothetical protein [Arabidop... 32 0.99
gb|AAF77272.1| (AF200831) NADH dehydrogenase subunit 4 [Dro... 32 1.3
gb|AAF77299.1| (AF200833) NADH dehydrogenase subunit 4 [Dro... 32 1.7
gb|AAF77285.1| (AF200832) NADH dehydrogenase subunit 4 [Dro... 32 1.7
gb|AAF77378.1| (AF200839) NADH dehydrogenase subunit 4 [Dro... 32 1.7
gb|AAF47594.1| (AE003473) CG12361 gene product [Drosophila ... 31 2.2
gb|AAL77148.1|AC090441_7 (AC090441) Putative TNP2 like tran... 31 2.2
gb|AAG30252.1| (AF305879) NADH dehydrogenase subunit 4 [Aed... 31 2.9
gb|AAF77260.1| (AF200830) NADH dehydrogenase subunit 4 [Dro... 30 3.8
pir||S01187 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) ch... 30 3.8
sp|P18931|NU4M_DROME NADH-ubiquinone oxidoreductase chain 4 30 3.8
ref|NP_008285.1|ND4_10704 (NC_001709) NADH dehydrogenase su... 30 3.8
gb|AAA69711.1| (M37275) NADH dehydrogenase 4 [Drosophila me... 30 3.8
dbj|BAA82975.2| (AB028946) KIAA1023 protein [Homo sapiens] 30 3.8
gb|AAF05623.1|AF191212_1 (AF191212) orphan nuclear receptor... 30 4.9
ref|NP_059048.1| (NM_017352) neuron-derived orphan receptor... 30 4.9
gb|AAF58935.1| (AE003833) CG13953 gene product [Drosophila ... 30 4.9
ref|NP_056558.1| (NM_015743) nuclear receptor subfamily 4, ... 30 4.9
gb|AAF79374.1|AC007887_33 (AC007887) F15O4.30 [Arabidopsis ... 30 4.9
ref|NP_113816.1| (NM_031628) nuclear receptor subfamily 4, ... 30 4.9
ref|NP_174792.1| (NM_103256) CACTA-element, putative [Arabi... 30 4.9
ref|NP_038296.1|ND4_15276 (NC_002184) NADH dehydrogenase su... 30 6.4
ref|NP_047702.1| (NC_001973) viral enhancing factor 1 [Lyma... 30 6.4
ref|NP_192282.1| (NM_116611) putative transposon protein [A... 30 6.4
gb|AAC58526.1| (AF019970) enhancin [Lymantria dispar nucleo... 30 6.4
ref|NP_407166.1| (NC_003143) maltose transport system perme... 30 6.4
gb|AAK21242.1| (AF334865) NADH dehydrogenase subunit 4 [Aed... 30 6.4
gb|AAK21228.1| (AF334851) NADH dehydrogenase subunit 4 [Aed... 30 6.4
gb|AAG22244.1| (AE003480) CG18869 gene product [Drosophila ... 29 8.4
gb|AAK68690.1|AF156100_1 (AF156100) hemicentin [Homo sapiens] 29 8.4
ref|NP_619305.1| (NC_003552) predicted protein [Methanosarc... 29 8.4
ref|NP_376148.1| (NC_003106) 320aa long conserved hypotheti... 29 8.4
gb|AAL39191.1| (AY069046) GH04745p [Drosophila melanogaster] 29 8.4
>gb|AAL25171.1|AC079852_4 (AC079852) Putative TNP-like transposable element [Oryza sativa]
gb|AAM08427.1|AC112513_13 (AC112513) Putative TNP-like transposable element [Oryza sativa]
Length = 2535
Score = 111 bits (278), Expect = 1e-24
Identities = 52/77 (67%), Positives = 60/77 (77%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP+ERRLLT KR+VR ARPEGSIAEAYV +ECLT CSRYF DV+TR NR GRN+ER +
Sbjct: 2433 YPVERRLLTLKRFVRKMARPEGSIAEAYVANECLTACSRYFADVDTRHNRDGRNKERVPM 2492
Query: 158 QSGDVSVFNHGVNFLGA 108
+S+F HG N LGA
Sbjct: 2493 SRCGLSIFQHGANLLGA 2509
Score = 47.4 bits (111), Expect = 3e-05
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVE----TRWNRPGRNRE 171
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ GR R
Sbjct: 760 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDLRPIGVPESRHEGRLRG 819
Query: 170 RSDLQSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
+ L ++ ++ + + K VL + + V PYIE
Sbjct: 820 KGTLGRKAITTVDNNL--------------FRKAHFTVLQHSSLVAPYIE 855
>gb|AAM18727.1|AC092548_5 (AC092548) putative TNP2-like transposon protein [Oryza sativa
(japonica cultivar-group)]
Length = 1571
Score = 78.6 bits (192), Expect = 1e-14
Identities = 44/106 (41%), Positives = 63/106 (58%), Gaps = 1/106 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
Y ER++ K VRN ARPEGSIAE Y+ DE +T SRY DVET+ NRPGR + S
Sbjct: 761 YLFERQIHYLKSLVRNMARPEGSIAEGYIADEFMTLSSRYLDDVETKHNRPGRIHDTSIG 820
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGD-EYDKMVLFVLSNCAEVLPYI 24
++S+F+ +G+ + + E ++ +++L NC EV YI
Sbjct: 821 NKFNLSIFSCAGRPIGSRKTRDLDMLESEQAHIYILRNCDEVQAYI 866
>gb|AAK91322.1|AC090441_4 (AC090441) Putative transposase protein [Oryza sativa]
Length = 870
Score = 77.4 bits (189), Expect = 3e-14
Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSD- 162
Y IER L K YVRN ARPEGSIAE+Y+ DEC+ FCSRY T+ N P RN ++ D
Sbjct: 557 YFIERYLGKLKSYVRNKARPEGSIAESYLADECMAFCSRYLEGFSTKHNIPSRNNDKPDQ 616
Query: 161 ----LQSGDVSVFNHGVNFLG-ASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
+ + ++F LG S Y E + +VL NC ++PY++
Sbjct: 617 FETPMSRQESTLFPPVGKPLGKPSAYSLTDREKLQAYRYVLYNCDAIVPYLK 668
>gb|AAD55677.1| (AF136221) putative transposase protein [Zea mays]
Length = 793
Score = 72.8 bits (177), Expect = 7e-13
Identities = 32/47 (68%), Positives = 38/47 (80%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETR 198
YPIER L T K YVRN A PEGSIAE Y+++EC+TFCSR+ DVET+
Sbjct: 746 YPIERYLRTLKAYVRNKAHPEGSIAEGYILEECMTFCSRFLQDVETK 792
>dbj|BAB64937.1| (AB071202) TdcA1-ORF1-ORF2 [Daucus carota]
Length = 988
Score = 68.2 bits (165), Expect = 2e-11
Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD-VETRWNRPGRNRERSD 162
YP ER L K ++N AR EGS+ AY+V+E TFCS YF V+T+ + RN
Sbjct: 203 YPFERFLRHLKNNIKNKARVEGSMCNAYLVEEASTFCSHYFEQHVQTKHRKVPRNDSSGG 262
Query: 161 LQS--GDVSVFNHGVNFLGASQYLEAGD-EYDKMVLFVLSNCAEVLPYIE 21
++ G+ S+F+H G + D EY +VL NC EV PY E
Sbjct: 263 GENFEGNFSIFSHPGRASGCANVRYLDDREYMAAHNYVLLNCPEVAPYTE 312
>dbj|BAB64529.1| (AB070979) TdcA1-ORF2 [Daucus carota]
Length = 812
Score = 68.2 bits (165), Expect = 2e-11
Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD-VETRWNRPGRNRERSD 162
YP ER L K ++N AR EGS+ AY+V+E TFCS YF V+T+ + RN
Sbjct: 427 YPFERFLRHLKNNIKNKARVEGSMCNAYLVEEASTFCSHYFEQHVQTKHRKVPRNDSSGG 486
Query: 161 LQS--GDVSVFNHGVNFLGASQYLEAGD-EYDKMVLFVLSNCAEVLPYIE 21
++ G+ S+F+H G + D EY +VL NC EV PY E
Sbjct: 487 GENFEGNFSIFSHPGRASGCANVRYLDDREYMAAHNYVLLNCPEVAPYTE 536
>ref|NP_178924.1| (NM_126880) putative TNP2-like transposon protein [Arabidopsis
thaliana]
gb|AAC97237.1| (AC005897) putative TNP2-like transposon protein [Arabidopsis
thaliana]
Length = 889
Score = 63.2 bits (152), Expect = 5e-10
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP ER + K +VRN ARPEG IAE+Y+ +EC+ FCS + + +P RN E +
Sbjct: 761 YPFERYMKVLKDFVRNPARPEGCIAESYLAEECMRFCSDFLKKTTSVEEKPERNTEYENN 820
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMV--LFVLSNCAEVLPYIE 21
+ + G +F+ E DK + L V+ N A PY+E
Sbjct: 821 SILEGRPISAGTSFMLT--------EVDKNIAHLAVIQNMAAFDPYVE 860
>ref|NP_565367.1| (NM_127061) En/Spm-like transposon protein [Arabidopsis thaliana]
gb|AAD03356.1| (AC005957) En/Spm-like transposon protein [Arabidopsis thaliana]
Length = 665
Score = 60.8 bits (146), Expect = 3e-09
Identities = 37/107 (34%), Positives = 54/107 (49%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP ER + K +VRNTARPEG IAE Y+ +EC+ FCS + + RN E
Sbjct: 566 YPFERYMKVLKDFVRNTARPEGCIAECYLAEECIQFCSEFLKKTTKVQEKADRNTE---Y 622
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMV-LFVLSNCAEVLPYIE 21
++ + G + A ++ + K+ L V+ N A V PY+E
Sbjct: 623 ENNSIL----GGRPISAGTFISLTEMERKIAHLAVIQNMAVVEPYVE 665
>ref|NP_567332.1| (NM_116876) may be a pseudogene [Arabidopsis thaliana]
gb|AAD48077.1|AF160183_4 (AF160183) contains similarity to Antirrhinum majus hypothetical
protein TNP2 (GB:X57297); may be a pseudogene
[Arabidopsis thaliana]
emb|CAB81144.1| (AL161509) contains similarity to Antirrhinum majus hypothetical
protein TNP2 (GB:X57297), may be a pseudogene~similarity
to [Arabidopsis thaliana]
Length = 767
Score = 57.8 bits (138), Expect = 2e-08
Identities = 36/107 (33%), Positives = 53/107 (48%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP ER + K +VRNT RPEG IAE Y+ +EC+ F S +F + RN E
Sbjct: 668 YPFERYMKVLKDFVRNTTRPEGCIAECYLAEECIQFYSEFFKKTTKVQEKADRNTE---F 724
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMV-LFVLSNCAEVLPYIE 21
++ + G + A ++ + K+ L V+ N A V PY+E
Sbjct: 725 ENNSIL----GGRPISAGTFISLTEMERKIAHLAVIQNMAVVEPYVE 767
>dbj|BAB02147.1| (AP000411) TNP2-like transposon protein-like [Arabidopsis thaliana]
Length = 786
Score = 57.4 bits (137), Expect = 3e-08
Identities = 35/106 (33%), Positives = 50/106 (47%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP ER + K +VRNTARPEG IAEAY+ +EC+ FCS RN + +
Sbjct: 641 YPFERYMKVLKDFVRNTARPEGCIAEAYLAEECMRFCSDLLKKTTNAEEEIERNADYENC 700
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
G A+ +E + L V+ N A++ PY++
Sbjct: 701 S------ILEGRPISAATSITLTENEKNIAHLAVIHNMAQLDPYVD 740
>gb|AAG60150.1|AC074360_15 (AC074360) En/Spm-like transposon protein, putative [Arabidopsis
thaliana]
Length = 1431
Score = 56.2 bits (134), Expect = 6e-08
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP ER + K +VRN+ +P+ IAE+Y+ +EC+ FCS + + +P RN E +
Sbjct: 589 YPFERYMKVLKDFVRNSVKPDVCIAESYLAEECMQFCSDFLKKTTSVEEKPERNTEYENN 648
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMV--LFVLSNCAEVLPYIE 21
+ + G +F+ E DK + L V+ N A + PY++
Sbjct: 649 SILEGRPISAGTSFMLT--------EVDKNIAHLAVIQNMAALDPYVD 688
>dbj|BAB64573.1| (AP003205) putative retrotransposable elements TNP2 [Oryza sativa
(japonica cultivar-group)]
Length = 1095
Score = 56.2 bits (134), Expect = 6e-08
Identities = 35/106 (33%), Positives = 47/106 (44%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP ER L K YVRN + PEGSI E+Y +E + FC Y + + + R D
Sbjct: 773 YPCERYLGILKGYVRNRSHPEGSIIESYTTEEAIEFCVDYMSETSSIGLPRSHHEGRLD- 831
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
GV +G YDK VL + EV+PY++
Sbjct: 832 ----------GVGTVGRKTIRLDRKVYDKAHFTVLQHMTEVVPYVD 867
>dbj|BAB44089.1| (AP003073) putative retrotransposable elements TNP2 [Oryza sativa
(japonica cultivar-group)]
Length = 1095
Score = 56.2 bits (134), Expect = 6e-08
Identities = 35/106 (33%), Positives = 47/106 (44%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP ER L K YVRN + PEGSI E+Y +E + FC Y + + + R D
Sbjct: 773 YPCERYLGILKGYVRNRSHPEGSIIESYTTEEAIEFCVDYMSETSSIGLPRSHHEGRLD- 831
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
GV +G YDK VL + EV+PY++
Sbjct: 832 ----------GVGTVGRKTIRLDRKVYDKAHFTVLQHMTEVVPYVD 867
>dbj|BAB90616.1| (AP003902) putative TNP2 [Oryza sativa (japonica cultivar-group)]
Length = 1045
Score = 56.2 bits (134), Expect = 6e-08
Identities = 35/106 (33%), Positives = 47/106 (44%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP ER L K YVRN + PEGSI E+Y +E + FC Y + + + R D
Sbjct: 723 YPCERYLGILKGYVRNRSHPEGSIIESYTTEEAIEFCVDYMSETSSIGLPRSHHEGRLD- 781
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
GV +G YDK VL + EV+PY++
Sbjct: 782 ----------GVGTVGRKTIRLDRKVYDKAHFTVLQHMTEVVPYVD 817
>gb|AAM01087.1|AC092748_25 (AC092748) Putative transposase [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 866
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/106 (33%), Positives = 45/106 (42%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K YVRN A+PEGSI E Y +E + FC Y D + R+ R
Sbjct: 560 WPFERYMGVLKSYVRNRAKPEGSIIEGYTTEEAIEFCVNYMSDADPIGVPASRHEGRLS- 618
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
GV +G + Y VL + AEV PY E
Sbjct: 619 ----------GVGTIGRKRIRPDQASYTYAYYAVLQHMAEVGPYFE 654
>gb|AAK13155.1|AC078829_7 (AC078829) putative transposase [Oryza sativa]
Length = 938
Score = 54.7 bits (130), Expect = 2e-07
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD-VETRWNRPGRNRERSD 162
YPIER K VRN AR E SIAEAY++DE F S YF D V+T N R +
Sbjct: 586 YPIERGQKYLKSKVRNRARVEASIAEAYILDEISNFTSIYFADQVQTIHNPVPRYNVATQ 645
Query: 161 LQSGDVSVFN-HGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYI 24
+++F+ G + +E++ +L+VL+N EV YI
Sbjct: 646 SIDCSLNLFSIRGDSTSRGVPRHRTREEWNAAMLYVLTNLTEVDDYI 692
>gb|AAM01138.1|AC108884_20 (AC108884) Putative transposase [Oryza sativa (japonica
cultivar-group)]
Length = 997
Score = 53.9 bits (128), Expect = 3e-07
Identities = 34/105 (32%), Positives = 44/105 (41%)
Frame = -1
Query: 335 PIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDLQ 156
P ER + K YVRN A+PEGSI E Y +E + FC Y D + R+ R
Sbjct: 687 PFERYMGVLKSYVRNRAKPEGSIIEGYTTEEAIEFCVNYMSDADPIGVPASRHEGRLS-- 744
Query: 155 SGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
GV +G + Y + VL + EV PY E
Sbjct: 745 ---------GVGTIGRKRIRPDQTSYAQAHYVVLQHITEVGPYFE 780
>gb|AAK95676.1|AC087723_9 (AC087723) Putative retrotransposable elements TNP2 [Oryza sativa]
Length = 808
Score = 53.1 bits (126), Expect = 5e-07
Identities = 34/105 (32%), Positives = 45/105 (42%)
Frame = -1
Query: 335 PIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDLQ 156
P ER + K YVRN A+PEGSI E Y +E + FC Y D + R+ R
Sbjct: 107 PFERYMGVLKSYVRNRAKPEGSIIEGYTTEEAIEFCVNYMSDADPIGVPASRHEGRLS-- 164
Query: 155 SGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
GV +G + Y + VL + AEV PY +
Sbjct: 165 ---------GVGTIGRKRIRPDQASYAQAHYAVLQHMAEVGPYFK 200
>gb|AAK92551.1|AC051624_9 (AC051624) Putative transposable element [Oryza sativa] [Oryza
sativa (japonica cultivar-group)]
Length = 635
Score = 52.0 bits (123), Expect = 1e-06
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ T R+ ER
Sbjct: 134 FPFERYMGILKKYVRNRARPEASIAKGYGTEEVIEFCIEFIEDLRTIGVPESRHEERL-- 191
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDE-YDKMVLFVLSNCAEVLPYIE 21
G LG + + + K VL + V PYIE
Sbjct: 192 ---------RGKGTLGRKAIMTVDNNLFRKAHFTVLQQSSLVAPYIE 229
>gb|AAA66266.1| (M25427) unknown protein [Zea mays]
Length = 897
Score = 52.0 bits (123), Expect = 1e-06
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
Y ER L + VRN AR EG IAEA+ E F S+YF D + R
Sbjct: 736 YSQERELKKLRGMVRNKARVEGCIAEAFAAREITLFSSKYFSDTNNVNAQTTRYHVAEQA 795
Query: 158 QSGDVSVFNHGVNFLGA-SQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
D+S F +GA + +L E +K +LF+ N E+ PY +
Sbjct: 796 PITDLSAFKWDGKGVGAYTSHLVGTIERNKTLLFLYVNMPELHPYFQ 842
>pir||S29329 hypothetical protein 1 - maize transposon En-1
prf||1206239A ORF 1 [Zea mays]
Length = 905
Score = 52.0 bits (123), Expect = 1e-06
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
Y ER L + VRN AR EG IAEA+ E F S+YF D + R
Sbjct: 744 YSQERELKKLRGMVRNKARVEGCIAEAFAAREITLFSSKYFSDTNNVNAQTTRYHVAEQA 803
Query: 158 QSGDVSVFNHGVNFLGA-SQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
D+S F +GA + +L E +K +LF+ N E+ PY +
Sbjct: 804 PITDLSAFKWDGKGVGAYTSHLVGTIERNKTLLFLYVNMPELHPYFQ 850
>gb|AAK50418.1|AC021891_19 (AC021891) Putative transposable element [Oryza sativa]
Length = 817
Score = 51.2 bits (121), Expect = 2e-06
Identities = 33/106 (31%), Positives = 45/106 (42%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K YVRN A+PEGSI E Y +E + FC Y + + R+ R
Sbjct: 496 WPFERYMGILKSYVRNRAKPEGSIIEGYTTEEAIEFCIDYMAETDPIGVPTSRHEGRL-- 553
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
GV + + Y + VL + AEV PY E
Sbjct: 554 ---------AGVGTTARKRIVPDQASYAQAHFAVLQHMAEVTPYFE 590
>gb|AAL58240.1|AC084762_14 (AC084762) putative transposon protein [Oryza sativa]
Length = 865
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/47 (53%), Positives = 32/47 (67%)
Frame = -1
Query: 332 IERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWN 192
+ER L + K + N ARPEGSIAE+Y++ EC TF S Y +ETR N
Sbjct: 642 VERFLGSLKGMMSNRARPEGSIAESYIMKECSTFFSMYLHGIETRIN 688
>ref|NP_174991.1| (NM_103451) TNP2-like transposon protein [Arabidopsis thaliana]
gb|AAG51239.1|AC035249_14 (AC035249) TNP2-like transposon protein; 80601-79432 [Arabidopsis
thaliana]
Length = 304
Score = 49.7 bits (117), Expect = 6e-06
Identities = 36/106 (33%), Positives = 49/106 (45%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP ER + T K +V+N AR E +AE Y+ EC+ FC + D RN D+
Sbjct: 204 YPFERYMKTLKAFVKNHARLEACMAEGYLAGECVAFCLEFLKDSVPVQETVNRN---EDI 260
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
++ D SV G L D D +VL N A + PY+E
Sbjct: 261 EA-DRSVVEGRPLQKGVEVTLSDKDR-DTAHRYVLMNMASLDPYVE 304
>gb|AAK92557.1|AC051624_15 (AC051624) Putative transposable element [Oryza sativa] [Oryza
sativa (japonica cultivar-group)]
Length = 655
Score = 49.3 bits (116), Expect = 8e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDV 207
+P ER + K+YVRN ARPE SIA+ YV +E + FC + D+
Sbjct: 376 FPFERYMGVLKKYVRNRARPEASIAKGYVTEEVIEFCVEFIEDL 419
>ref|NP_178934.1| (NM_126890) putative TNP1-like transposon protein [Arabidopsis
thaliana]
gb|AAD28689.1| (AC007112) putative TNP1-like transposon protein [Arabidopsis
thaliana]
Length = 984
Score = 48.9 bits (115), Expect = 1e-05
Identities = 26/60 (43%), Positives = 33/60 (54%), Gaps = 3/60 (5%)
Frame = -1
Query: 308 KRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRE---RSDLQSGDVSV 138
K +VRNTARPEG IAE Y+ +EC+ FCS + RN E S L+ +SV
Sbjct: 5 KDFVRNTARPEGCIAECYLAEECIQFCSEFLKKTTNVQESVDRNTEYESNSILEGRPISV 64
>gb|AAD24042.2| (AF121139) RIM2 protein [Oryza sativa]
Length = 653
Score = 48.5 bits (114), Expect = 1e-05
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVE----TRWNRPGRNRE 171
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ GR RE
Sbjct: 488 FPFERYMGVQKKYVRNHARPEASIAKGYGTEEVIEFCVEFIEDLRPIGVPESRHEGRLRE 547
Query: 170 RSDLQSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
+ L + ++ D + K +L + + V PYIE
Sbjct: 548 KGTLGRKAIMTVDN--------------DLFRKAHFTILQHTSLVAPYIE 583
>dbj|BAB86564.1| (AP003710) putative TNP-like transposable element [Oryza sativa
(japonica cultivar-group)]
Length = 1110
Score = 48.1 bits (113), Expect = 2e-05
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ R+ R
Sbjct: 760 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDLRPIGVPESRHEGRL-- 817
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDE-YDKMVLFVLSNCAEVLPYIE 21
G LG + + + K VL + + V PYIE
Sbjct: 818 ---------RGKGTLGRKSIMTVDNNLFRKAHFTVLQHSSLVAPYIE 855
>dbj|BAB90570.1| (AP003794) putative TNP2-like transposable element [Oryza sativa
(japonica cultivar-group)]
dbj|BAB91763.1| (AP003287) putative TNP2-like transposable element [Oryza sativa
(japonica cultivar-group)]
Length = 1110
Score = 47.8 bits (112), Expect = 2e-05
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ R+ R
Sbjct: 760 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIKFCVEFIEDLRPIGVPESRHEGRL-- 817
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDE-YDKMVLFVLSNCAEVLPYIE 21
G LG + + + K VL + + V PYIE
Sbjct: 818 ---------RGKGTLGRKAIMTVDNNLFRKAHFTVLQHSSLVAPYIE 855
>gb|AAK92611.1|AC078944_22 (AC078944) Putative transposable element [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1109
Score = 47.8 bits (112), Expect = 2e-05
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ R+ R
Sbjct: 760 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDLRPIGVPKSRHEGRL-- 817
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDE-YDKMVLFVLSNCAEVLPYIE 21
G LG + + + K VL + + V PYIE
Sbjct: 818 ---------RGKGTLGRKAIMTVDNNLFRKAHFTVLQHSSLVAPYIE 855
>gb|AAL75729.1|AC091724_2 (AC091724) Putative TNP2-like transposable element [Oryza sativa]
Length = 1089
Score = 47.8 bits (112), Expect = 2e-05
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ R+ R
Sbjct: 781 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDLRPIGVPESRHEGRL-- 838
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDE-YDKMVLFVLSNCAEVLPYIE 21
G LG + + + K VL + + V PYIE
Sbjct: 839 ---------RGKGTLGRKAIMTVDNNLFRKAHFTVLQHSSLVAPYIE 876
>gb|AAK53832.1|AC011806_9 (AC011806) Putative TNP-like transposable element [Oryza sativa]
Length = 1076
Score = 47.4 bits (111), Expect = 3e-05
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVE----TRWNRPGRNRE 171
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ GR R
Sbjct: 735 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDLRPIGVPESRHEGRLRG 794
Query: 170 RSDLQSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
+ L ++ ++ + + K VL + + V PYIE
Sbjct: 795 KGTLGRKAITTVDNNL--------------FRKAHFTVLQHSSLVAPYIE 830
>gb|AAL31022.1|AC078948_6 (AC078948) hyothetical protein [Oryza sativa]
Length = 935
Score = 47.4 bits (111), Expect = 3e-05
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVE----TRWNRPGRNRE 171
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ GR R
Sbjct: 670 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDLRPIGVPESRHEGRLRG 729
Query: 170 RSDLQSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
+ L ++ ++ + + K VL + + V PYIE
Sbjct: 730 KGTLGRKAITTVDNNL--------------FRKAHFTVLQHSSLVAPYIE 765
>dbj|BAB63505.1| (AP003141) hypothetical protein~similar to Oryza sativa chromosome
10, OSJNBb0028C01.11 [Oryza sativa (japonica
cultivar-group)]
Length = 1352
Score = 47.4 bits (111), Expect = 3e-05
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVE----TRWNRPGRNRE 171
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ GR R
Sbjct: 798 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDLRPIGVPESRHEGRLRG 857
Query: 170 RSDLQSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
+ L ++ ++ + + K VL + + V PYIE
Sbjct: 858 KGTLGRKAITTVDNNL--------------FRKAHFTVLQHSSLVAPYIE 893
>gb|AAM08512.1|AC068654_14 (AC068654) Putative transposase [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 985
Score = 47.4 bits (111), Expect = 3e-05
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+ R+ R
Sbjct: 635 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDLRPIGVPESRHEGRL-- 692
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDE-YDKMVLFVLSNCAEVLPYIE 21
G LG + + + K VL + V PYIE
Sbjct: 693 ---------RGKGTLGRKAIMTVDNNLFRKAHFTVLQQSSLVAPYIE 730
>gb|AAG17043.1|AF187822_1 (AF187822) transposase [Zea mays]
Length = 854
Score = 47.0 bits (110), Expect = 4e-05
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YPIER L + VRN AR EG IAEA+ + E F +RYF + R ++
Sbjct: 748 YPIERALKKLRASVRNKARVEGCIAEAFALKEISQFSTRYFARANNVFAPSVRLHVENES 807
Query: 158 QSGDVSVFNHGVNFLGASQ--YLEAGDEYDKMVLFVLSN 48
+ +F + +G ++EA D + ++L++ SN
Sbjct: 808 PQSTLQIFANPGKAVGKGSVCHIEASD-LNTLMLYMYSN 845
>dbj|BAB03186.1| (AP002058) En/Spm transposon protein-like [Arabidopsis thaliana]
Length = 1516
Score = 47.0 bits (110), Expect = 4e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRY 219
YP ER + T K YV+N ARPE +AE Y+ EC+ C +
Sbjct: 699 YPFERYMKTLKAYVKNFARPEACMAEGYLAGECMALCLEF 738
>gb|AAM08818.1|AC090486_28 (AC090486) Putative tnp2 transposase [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 946
Score = 46.6 bits (109), Expect = 5e-05
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDV 207
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+
Sbjct: 609 FPFERYMGVLKKYVRNRARPEASIAKGYRTEEVIEFCVEFIEDL 652
>gb|AAM00999.1|AC090482_28 (AC090482) Putative transposase [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1110
Score = 46.6 bits (109), Expect = 5e-05
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDV 207
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+
Sbjct: 760 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDL 803
>gb|AAK00419.2|AC069324_5 (AC069324) Putative Tam1 transposon protein TNP2 [Oryza sativa]
Length = 999
Score = 46.6 bits (109), Expect = 5e-05
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDV 207
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+
Sbjct: 710 FPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDL 753
>gb|AAL77145.1|AC097447_11 (AC097447) Putative TNP-like transposable element [Oryza sativa]
Length = 844
Score = 46.6 bits (109), Expect = 5e-05
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K+YVRN ARPE SIA+ Y E + FC + D+ R+ R
Sbjct: 629 FPFERYMGVLKKYVRNRARPEASIAKGYGTKEVIEFCVEFIEDLRPIGVPESRHEGRL-- 686
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDE-YDKMVLFVLSNCAEVLPYIE 21
G LG + + + K VL + + V PYIE
Sbjct: 687 ---------RGKGTLGRKAIMTVDNNLFRKAHFTVLQHSSLVAPYIE 724
>gb|AAK91331.1|AC090441_13 (AC090441) Putative retrotransposable elements TNP2 [Oryza sativa]
Length = 1004
Score = 46.2 bits (108), Expect = 7e-05
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDV 207
+P ER + K+YVRN ARPE SIA+ Y +E + FC + D+
Sbjct: 713 FPFERYMGILKKYVRNRARPEASIAKGYGTEEVIEFCVEFIEDL 756
>dbj|BAB09502.1| (AB006705) transposon protein-like [Arabidopsis thaliana]
Length = 1089
Score = 46.2 bits (108), Expect = 7e-05
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNR------PGRN 177
Y ER + K+ V+N A+ EGSI E Y+ +E TFC+ YF NR G N
Sbjct: 758 YCFERYMGHLKKKVKNKAKVEGSIVEQYINEEISTFCTYYFDRHIKTKNRAGDRHYDGGN 817
Query: 176 RERSDLQSGDVSVFNHGVNFLGASQYLEAGD-EYDKMVLFVLSNCAEVLPY 27
+E + G +F+ G + D +Y ++L NC ++ P+
Sbjct: 818 QEDTHEFDGVPDIFSQAGRDSGKESEIWLQDKDYHIAHRYILRNCDQLRPF 868
>gb|AAG52024.1|AC022456_5 (AC022456) Tam1 transposon protein TNP2, putative; 12762-16371
[Arabidopsis thaliana]
Length = 887
Score = 45.4 bits (106), Expect = 1e-04
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Frame = -1
Query: 308 KRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNR--ERSDLQSG----- 150
K +VRN ARPEG IAE+Y+ +EC+ FC + + + RN E S + G
Sbjct: 642 KDFVRNPARPEGCIAESYLEEECVQFCGDFLKNTTNVEEKVDRNTEYENSSILEGRPISA 701
Query: 149 ----DVSVFNHGVNFLGASQYLEAGDEYDKMVL 63
+S + + L Q + A D+Y M L
Sbjct: 702 GTSITLSEMDKNIAHLAVIQNMAALDQYVDMHL 734
>gb|AAM01003.1|AC090488_3 (AC090488) Putative transposable element [Oryza sativa] [Oryza
sativa (japonica cultivar-group)]
Length = 1020
Score = 45.1 bits (105), Expect = 1e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVE 204
+P ER + K+YVRN +RPE SI + Y +E + FC + D+E
Sbjct: 675 FPFERYMGVLKKYVRNRSRPEASITKGYGTEEVIEFCVDFIKDLE 719
>gb|AAK92644.1|AC079634_5 (AC079634) Putative transposable element [Oryza sativa] [Oryza
sativa (japonica cultivar-group)]
Length = 714
Score = 44.7 bits (104), Expect = 2e-04
Identities = 31/106 (29%), Positives = 44/106 (41%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K YV N A+PE SI E Y +E + FC Y + + R+ R
Sbjct: 470 WPFERYMGILKSYVWNRAKPERSIIEGYTTEEAIEFCIDYMAETDPIRVPVSRHEGRL-- 527
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
GV+ + + Y + VL + AEV PY E
Sbjct: 528 ---------AGVSTTARKRIVPNQASYAQAHFAVLQHMAEVTPYFE 564
>gb|AAG46071.1|AC079830_11 (AC079830) putative transposase protein [Oryza sativa]
Length = 668
Score = 43.5 bits (101), Expect = 4e-04
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDV 207
+P ER + K+YVRN A PE SIA+ Y +E FC + D+
Sbjct: 402 FPFERYMGVLKKYVRNRAHPEASIAKGYGTEEVTEFCVEFIEDL 445
>gb|AAM01176.1|AC113336_28 (AC113336) Putative transposase [Oryza sativa (japonica
cultivar-group)]
Length = 698
Score = 43.5 bits (101), Expect = 4e-04
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDV 207
+P ER + K+YVR ARPE SIA+ Y +E + FC + D+
Sbjct: 432 FPFERYMGVLKKYVRYRARPEASIAKGYGTEEVIDFCVEFIEDL 475
>gb|AAK38319.1|AC079029_20 (AC079029) putative transposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 1016
Score = 42.7 bits (99), Expect = 7e-04
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+P ER + K+YV N A PE SIA+ Y +E + FC + D+ R +R L
Sbjct: 666 FPFERYMGVLKKYVHNRACPEASIAKGYGTEEVIEFCVEFIEDIHP--IRVPESRHEGRL 723
Query: 158 QSGDVSVFNHGVNFLGASQYLEAGDE-YDKMVLFVLSNCAEVLPYIE 21
+ G LG + + + K VL + V PYIE
Sbjct: 724 R---------GKGTLGRKAIMTVDNNLFCKAHFTVLQQSSLVAPYIE 761
>gb|AAK92607.1|AC078944_18 (AC078944) Putative transposable element [Oryza sativa] [Oryza
sativa (japonica cultivar-group)]
Length = 440
Score = 42.4 bits (98), Expect = 0.001
Identities = 34/112 (30%), Positives = 46/112 (40%), Gaps = 6/112 (5%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
+ ER + K+YVRN +RP+GSI E Y +E + FC Y DL
Sbjct: 163 WAFERFMGIIKKYVRNRSRPKGSIVEGYATEEVVEFCIDYM-----------------DL 205
Query: 158 QSGDVSVFNH-----GVNFLGASQYLEAGDEYDKMVLF-VLSNCAEVLPYIE 21
Q V V H G LG + + + F VL A V PY++
Sbjct: 206 QPIGVPVSRHEGRMLGKGTLGHRRIFAPNRQTIRQAHFAVLRQSALVAPYVD 257
>gb|AAK92600.1|AC078944_11 (AC078944) Putative transposable element [Oryza sativa] [Oryza
sativa (japonica cultivar-group)]
Length = 256
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFC 228
+P ER + K+YVRN A PE SIA+ Y +E + FC
Sbjct: 24 FPFERYMGVLKKYVRNRAHPEASIAKGYGTEEIIEFC 60
>gb|AAL75481.1|AF466202_7 (AF466202) putative TNP2 [Zea mays]
Length = 804
Score = 42.4 bits (98), Expect = 0.001
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
+ +ER L K YVRN A PEGSI E Y +E + C Y D
Sbjct: 548 FQLERYLGVLKGYVRNHAHPEGSIMEGYTTEEVIESCIDYISD 590
>ref|NP_179111.1| (NM_127069) En/Spm-like transposon protein [Arabidopsis thaliana]
gb|AAD03364.1| (AC005957) En/Spm-like transposon protein [Arabidopsis thaliana]
Length = 672
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/104 (28%), Positives = 48/104 (45%)
Frame = -1
Query: 332 IERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDLQS 153
+ER + T K YV+N A E +AE Y+ EC+ FC ++ ++ + P + S
Sbjct: 574 LERYMKTLKAYVKNFATLEACMAEGYLAGECMAFCLKF---LQNSLSVPEVVNRNEGVDS 630
Query: 152 GDVSVFNHGVNFLGASQYLEAGDEYDKMVLFVLSNCAEVLPYIE 21
S+ G A+Q E D +VL N A + PY++
Sbjct: 631 N--SLVLEGRPLHKATQVTLTSKERDIAHRYVLMNMAVMDPYVK 672
>ref|NP_175072.1| (NM_103532) En/Spm-like transposon protein, putative [Arabidopsis
thaliana]
gb|AAG50553.1|AC074228_8 (AC074228) En/Spm-like transposon protein, putative [Arabidopsis
thaliana]
Length = 1074
Score = 40.0 bits (92), Expect = 0.005
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDL 159
YP ER K V+N GSI E+Y+ DE F YF D + +S
Sbjct: 700 YPFERFFKKLKGKVKNKRYAAGSIVESYINDEIAYFSEHYFAD---------HIQTKSIF 750
Query: 158 QSGDVSVFN-HGVNFLGASQYLEAGD---------EYDKMVLFVLSNCAEVLPY 27
G+V V++ HGV + +G+ +Y +VL NC P+
Sbjct: 751 DEGEVPVYHVHGVPNIFMHVGRPSGEMHVEWLSEKDYQSAHAYVLRNCDYFKPF 804
>gb|AAM23249.1|AC092553_15 (AC092553) Putative transposase [Oryza sativa (japonica
cultivar-group)]
Length = 1256
Score = 39.7 bits (91), Expect = 0.006
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRY 219
+ ER + K+YVRN + PEGSI E Y +E + FC Y
Sbjct: 270 WAFERFMGIIKKYVRNRSIPEGSIIEGYATEEVVEFCIDY 309
>gb|AAD27566.1|AF114171_7 (AF114171) TNP2-like protein [Sorghum bicolor]
Length = 1073
Score = 39.3 bits (90), Expect = 0.008
Identities = 27/88 (30%), Positives = 40/88 (44%), Gaps = 1/88 (1%)
Frame = -1
Query: 281 PEGSIAEAYVVDECLTFCSRYFGDVETRWNRPGRNRERSDLQSGDVSVFNHGVNFLGASQ 102
PEGSIA+ Y +E + FC + D++ R+ R G LG
Sbjct: 739 PEGSIAKGYGTEEVIEFCVDFIPDLDPIGIPESRHEGRLS-----------GKGTLGKKT 787
Query: 101 YLEAGDEY-DKMVLFVLSNCAEVLPYIE 21
Y+ G++Y +K VL N + V PY+E
Sbjct: 788 YIGTGNDYFNKAHYTVLQNSSLVEPYVE 815
>ref|NP_189765.1| (NM_114045) transposon-like ORF, putative [Arabidopsis thaliana]
Length = 1059
Score = 39.3 bits (90), Expect = 0.008
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFG-DVETRWNRPGR 180
YP ER + T K +N AR EGSI + +E F S YF V T+ RP R
Sbjct: 676 YPFERFMKTLKGKAKNLARVEGSIVAGSLTEETTHFTSYYFSPTVRTKKTRPRR 729
>gb|AAK50407.1|AC021891_8 (AC021891) Putative transposable element [Oryza sativa]
Length = 1155
Score = 39.3 bits (90), Expect = 0.008
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 329 ERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
ER + K YVRN A PEGS+ E Y +E + C Y D
Sbjct: 824 ERYMSILKGYVRNRAHPEGSMIEGYTTEEAVECCMDYIKD 863
>gb|AAL83351.1|AC074282_18 (AC074282) Putative retrotransposable elements TNP2 [Oryza sativa
(japonica cultivar-group)]
Length = 1114
Score = 39.3 bits (90), Expect = 0.008
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 329 ERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
ER + K YVRN A PEGS+ E Y +E + C Y D
Sbjct: 784 ERYMSILKGYVRNRAHPEGSMIEGYTTEEAVECCMDYIKD 823
>dbj|BAB55689.1| (AP003053) putative TNP2 [Oryza sativa (japonica cultivar-group)]
dbj|BAB89187.1| (AP003792) putative retrotransposable elements TNP2 [Oryza sativa
(japonica cultivar-group)]
Length = 1114
Score = 39.3 bits (90), Expect = 0.008
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 329 ERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
ER + K YVRN A PEGS+ E Y +E + C Y D
Sbjct: 784 ERYMSILKGYVRNRAHPEGSMIEGYTTEEAVECCMDYIKD 823
>gb|AAM08552.1|AC092749_5 (AC092749) Putative TNP2 transposase [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 837
Score = 38.9 bits (89), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 329 ERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
ER + K YVRN A PEGS+ E Y +E + C Y D
Sbjct: 685 ERYMAVLKGYVRNRAHPEGSMVEGYSTEEVVECCIDYLKD 724
>gb|AAM08850.1|AC113337_14 (AC113337) Putative tnp2 transposase [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1360
Score = 37.7 bits (86), Expect = 0.024
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 329 ERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
ER + K YVRN A PEGS+ E Y E + C Y D
Sbjct: 1032 ERYMAVLKGYVRNRAHPEGSMVEGYSTGEVVECCIDYLKD 1071
>ref|NP_178951.1| (NM_126907) putative TNP2-like transposon protein [Arabidopsis
thaliana]
gb|AAD20646.1| (AC006437) putative TNP2-like transposon protein [Arabidopsis
thaliana]
Length = 1040
Score = 36.6 bits (83), Expect = 0.052
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFG-DVETRWNRP 186
YP ER + + K +N AR EGSI + +E F S YF V T+ RP
Sbjct: 924 YPFERFMKSLKGKAKNLARVEGSIVAGSLTEETSHFTSYYFSPSVRTKKTRP 975
>gb|AAF06087.1|AC007918_11 (AC007918) Similar to gi|4325351 T25H8.2 TNP2 protein homolog from
Arabidopsis thaliana BAC gb|AF128394
Length = 1121
Score = 36.6 bits (83), Expect = 0.052
Identities = 30/109 (27%), Positives = 43/109 (38%), Gaps = 5/109 (4%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD---VETRWNRPGRNRER 168
YP ER K +N GSI E+Y+ DE F YF D ++R R
Sbjct: 743 YPFERFFKKLKGKAKNKRYAAGSIVESYINDEIAYFSEHYFADHIQTKSRLTRFNEGEVP 802
Query: 167 SDLQSGDVSVFNHGVNFLGASQYLE--AGDEYDKMVLFVLSNCAEVLPY 27
SG ++F H V +++ +Y +VL NC P+
Sbjct: 803 VYHVSGVPNIFMH-VGRPSGEMHVDWLLEKDYQSAHAYVLRNCDYFKPF 850
>sp|P15551|NU4M_STRPU NADH-ubiquinone oxidoreductase chain 4
emb|CAA31159.2| (X12631) NADH dehydrogenase (ND4) subunit 4 [Strongylocentrotus
purpuratus]
Length = 463
Score = 36.6 bits (83), Expect = 0.052
Identities = 22/69 (31%), Positives = 37/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEIESGLICK 155
G L+ SV+C Q DLK L+ + HMS+ +A +F+ + W +G + GL+
Sbjct: 271 GALITSVICVRQTDLKALIAYSSVGHMSIVAAAIFSETS---WGMNGALMLMVAHGLVSS 327
Query: 154 VVMSLFSTM 128
+ SL +T+
Sbjct: 328 ALFSLANTV 336
>ref|NP_006974.1|ND4_10181 (NC_001453) NADH dehydrogenase subunit 4 [Strongylocentrotus
purpuratus]
Length = 463
Score = 36.6 bits (83), Expect = 0.052
Identities = 22/69 (31%), Positives = 37/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEIESGLICK 155
G L+ SV+C Q DLK L+ + HMS+ +A +F+ + W +G + GL+
Sbjct: 271 GALITSVICVRQTDLKALIAYSSVGHMSIVAAAIFSETS---WGMNGALMLMVAHGLVSS 327
Query: 154 VVMSLFSTM 128
+ SL +T+
Sbjct: 328 ALFSLANTV 336
>pir||S01508 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - sea urchin
(Strongylocentrotus purpuratus) mitochondrion
Length = 460
Score = 36.6 bits (83), Expect = 0.052
Identities = 22/69 (31%), Positives = 37/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEIESGLICK 155
G L+ SV+C Q DLK L+ + HMS+ +A +F+ + W +G + GL+
Sbjct: 271 GALITSVICVRQTDLKALIAYSSVGHMSIVAAAIFSETS---WGMNGALMLMVAHGLVSS 327
Query: 154 VVMSLFSTM 128
+ SL +T+
Sbjct: 328 ALFSLANTV 336
>ref|NP_189616.1| (NM_113896) TNP2-like transposon protein, putative [Arabidopsis
thaliana]
Length = 1158
Score = 36.2 bits (82), Expect = 0.068
Identities = 29/109 (26%), Positives = 44/109 (39%), Gaps = 5/109 (4%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD---VETRWNRPGRNRER 168
YP ER K +N GSI E+Y+ DE F YF D ++R R +
Sbjct: 780 YPFERFFKKLKGKAKNKRYAAGSIVESYINDEIAYFSEHYFADHIQTKSRLTRFNEGKVP 839
Query: 167 SDLQSGDVSVFNHGVNFLGASQYLE--AGDEYDKMVLFVLSNCAEVLPY 27
G ++F H V +++ + +Y +VL NC P+
Sbjct: 840 VYHVPGVPNIFMH-VGRPSGEMHVDWLSEKDYQSAHAYVLRNCDYFKPF 887
>gb|AAF79675.1|AC022314_16 (AC022314) F9C16.30 [Arabidopsis thaliana]
Length = 1001
Score = 36.2 bits (82), Expect = 0.068
Identities = 18/43 (41%), Positives = 21/43 (47%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
YP ER K V+N GSI E+Y+ DE F YF D
Sbjct: 684 YPFERFFKKLKGKVKNKRYAAGSIVESYINDEIAYFSEHYFAD 726
>sp|P34941|NU4M_ARBLI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4
pir||B39746 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - sea urchin
(Arbacia lixula) mitochondrion (SGC8)
gb|AAA98046.1| (M74839) ND4 gene product [Arbacia lixula]
Length = 457
Score = 35.4 bits (80), Expect = 0.12
Identities = 22/69 (31%), Positives = 37/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEIESGLICK 155
G L+ S++C Q DLK L+ + HMS+ +A +F + +W +G I GL+
Sbjct: 268 GALVTSIICIRQTDLKALIAYSSVGHMSIVAAGVF---SQTIWGINGALMLMIAHGLVSS 324
Query: 154 VVMSLFSTM 128
+ +L +TM
Sbjct: 325 ALFALANTM 333
>ref|NP_007351.1|ND4_11617 (NC_001770) NADH dehydrogenase subunit 4 [Arbacia lixula]
pir||T11800 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - sea urchin
(Arbacia lixula) mitochondrion
emb|CAA56615.1| (X80396) NADH dehydrogenase subunit 4 [Arbacia lixula]
Length = 461
Score = 35.0 bits (79), Expect = 0.15
Identities = 22/69 (31%), Positives = 37/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEIESGLICK 155
G L+ S++C Q DLK L+ + HMS+ +A +F + +W +G I GL+
Sbjct: 270 GALVTSIICIRQTDLKALIAYSSVGHMSIVAAGVF---SQTIWGINGALMLMIAHGLVSS 326
Query: 154 VVMSLFSTM 128
+ SL +T+
Sbjct: 327 ALFSLANTV 335
>ref|NP_189691.1| (NM_113971) hypothetical protein [Arabidopsis thaliana]
Length = 1116
Score = 34.7 bits (78), Expect = 0.20
Identities = 17/43 (39%), Positives = 20/43 (45%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
YP ER K +N GSI E+Y+ DE F YF D
Sbjct: 738 YPFERFFKKLKGKAKNKRYAAGSIVESYINDEIAYFSEHYFAD 780
>ref|NP_192299.1| (NM_116628) putative transposon protein [Arabidopsis thaliana]
gb|AAD17349.1| (AF128394) similar to Antirrhinum majus (garden snapdragon) TNP2
protein (GB:X57297) [Arabidopsis thaliana]
emb|CAB80813.1| (AL161498) putative transposon protein [Arabidopsis thaliana]
Length = 817
Score = 34.7 bits (78), Expect = 0.20
Identities = 17/43 (39%), Positives = 20/43 (45%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
YP ER K +N GSI E+Y+ DE F YF D
Sbjct: 768 YPFERFFKKLKGKAKNKRYAAGSIVESYINDEIAYFSEHYFAD 810
>prf||1312307C NADH dehydrogenase 4 [Asterozoa]
Length = 459
Score = 34.7 bits (78), Expect = 0.20
Identities = 29/104 (27%), Positives = 51/104 (48%), Gaps = 4/104 (3%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEIESGLICK 155
G L+ S++C Q DLK L+ + HMS+ ++ +F+L +W +G I GLI
Sbjct: 270 GALITSIICLRQTDLKALIAYSSVGHMSIVASGIFSLS---LWGINGALTLMIAHGLISS 326
Query: 154 VVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSAIAPRFYHIS 23
+ L + L N R +S+TR F + + + ++ I+
Sbjct: 327 ALFCLAN-----LLYERNGTR-TLSITRGFKMVTPLLTLWWTIT 364
>ref|NP_008162.1|ND4_10513 (NC_001627) NADH dehydrogenase subunit 4 [Asterina pectinifera]
sp|P11992|NU4M_ASTPE NADH-ubiquinone oxidoreductase chain 4
pir||C27311 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - starfish
(Asterina pectinifera) mitochondrion
pir||S70591 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - starfish
(Asterina pectinifera) mitochondrion (SGC8)
dbj|BAA03874.1| (D16387) NADH-dehydrogenase subunit 4 [Asterina pectinifera]
gb|AAA65516.2| (M17619) NADH dehydrogenase subunit ND4 [Asterina pectinifera]
Length = 460
Score = 34.7 bits (78), Expect = 0.20
Identities = 29/104 (27%), Positives = 51/104 (48%), Gaps = 4/104 (3%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEIESGLICK 155
G L+ S++C Q DLK L+ + HMS+ ++ +F+L +W +G I GLI
Sbjct: 271 GALITSIICLRQTDLKALIAYSSVGHMSIVASGIFSLS---LWGINGALTLMIAHGLISS 327
Query: 154 VVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSAIAPRFYHIS 23
+ L + L N R +S+TR F + + + ++ I+
Sbjct: 328 ALFCLAN-----LLYERNGTR-TLSITRGFKMVTPLLTLWWTIT 365
>gb|AAF69717.1|AC016041_22 (AC016041) F27J15.14 [Arabidopsis thaliana]
Length = 1526
Score = 34.3 bits (77), Expect = 0.26
Identities = 17/43 (39%), Positives = 20/43 (45%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
YP ER K +N GSI E+Y+ DE F YF D
Sbjct: 741 YPFERFFKKLKGKAKNKRYAAGSIVESYINDEISYFSEHYFAD 783
>ref|NP_192540.1| (NM_116869) putative transposon protein [Arabidopsis thaliana]
gb|AAD15486.1| (AC006266) putative transposon protein [Arabidopsis thaliana]
emb|CAB77951.1| (AL161508) putative transposon protein [Arabidopsis thaliana]
Length = 609
Score = 33.5 bits (75), Expect = 0.44
Identities = 17/43 (39%), Positives = 20/43 (45%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
YP ER K +N GSI E+Y+ DE F YF D
Sbjct: 560 YPFERFFKKFKGKAKNKRYAAGSIVESYINDEIAYFSEYYFAD 602
>sp|P12775|NU4M_PARLI NADH-ubiquinone oxidoreductase chain 4
Length = 464
Score = 33.5 bits (75), Expect = 0.44
Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEIESGLICK 155
G L+ S++C Q DLK L+ + HMS+ +A +F+ W +G I GL+
Sbjct: 272 GALVTSIICVRQTDLKALIAYSSVGHMSIVAAAIFSSTN---WGTNGALILMIAYGLVSS 328
Query: 154 VVMSLFSTM 128
+ SL +T+
Sbjct: 329 DLFSLANTV 337
>gb|AAA68142.2| (J04815) NADH dehydrogenase subunit 4 [Paracentrotus lividus]
Length = 464
Score = 33.5 bits (75), Expect = 0.44
Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEIESGLICK 155
G L+ S++C Q DLK L+ + HMS+ +A +F+ W +G I GL+
Sbjct: 272 GALVTSIICVRQTDLKALIAYSSVGHMSIVAAAIFSSTN---WGTNGALILMIAYGLVSS 328
Query: 154 VVMSLFSTM 128
+ SL +T+
Sbjct: 329 DLFSLANTV 337
>ref|NP_008130.2|ND4_10421 (NC_001572) NADH dehydrogenase subunit 4 [Paracentrotus lividus]
pir||A34285 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - sea urchin
(Paracentrotus lividus) mitochondrion
Length = 463
Score = 33.5 bits (75), Expect = 0.44
Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEIESGLICK 155
G L+ S++C Q DLK L+ + HMS+ +A +F+ W +G I GL+
Sbjct: 271 GALVTSIICVRQTDLKALIAYSSVGHMSIVAAAIFSSTN---WGTNGALILMIAYGLVSS 327
Query: 154 VVMSLFSTM 128
+ SL +T+
Sbjct: 328 DLFSLANTV 336
>ref|NP_189703.1| (NM_113983) hypothetical protein [Arabidopsis thaliana]
Length = 953
Score = 32.3 bits (72), Expect = 0.99
Identities = 20/54 (37%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFG-DVETRWNRPGR 180
Y E+ + + K +N AR EGSI + +E F S YF V T+ RP R
Sbjct: 685 YLFEQFMKSLKGKAKNLARVEGSIVAGSLTEETSHFTSYYFSPSVRTKKTRPRR 738
>gb|AAF77272.1| (AF200831) NADH dehydrogenase subunit 4 [Drosophila mauritiana]
gb|AAF77468.1| (AF200846) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77481.1| (AF200847) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77494.1| (AF200848) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77508.1| (AF200849) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77520.1| (AF200850) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77534.1| (AF200851) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77546.1| (AF200852) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77559.1| (AF200853) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77572.1| (AF200854) NADH dehydrogenase subunit 4 [Drosophila simulans]
Length = 446
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEI-----ES 170
G +LVS++C Q DLK L+ + HM + L L T+ W G+ I S
Sbjct: 256 GGMLVSLVCLRQTDLKALIAYSSVAHMGIV---LSGLLTMTYWGLSGSYTLMIAHGLCSS 312
Query: 169 GLICKVVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSA 50
GL C +S + L + SMT W+ L S+
Sbjct: 313 GLFCLANVSYERLGSRSMLINKGLLNFMPSMTLWWFLLSS 352
>gb|AAF77299.1| (AF200833) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77313.1| (AF200834) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77326.1| (AF200835) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77338.1| (AF200836) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77351.1| (AF200837) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77363.1| (AF200838) NADH dehydrogenase subunit 4 [Drosophila simulans]
Length = 446
Score = 31.6 bits (70), Expect = 1.7
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEI-----ES 170
G +LVS++C Q DLK L+ + HM + L L T+ W G+ I S
Sbjct: 256 GGVLVSLVCLRQTDLKALIAYSSVAHMGIV---LSGLLTMTYWGLSGSYTLMIAHGLCSS 312
Query: 169 GLICKVVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSA 50
GL C +S + L + SMT W+ L S+
Sbjct: 313 GLFCLANVSYERLGSRSMLINKGLLNFMPSMTLWWFLLSS 352
>gb|AAF77285.1| (AF200832) NADH dehydrogenase subunit 4 [Drosophila sechellia]
Length = 446
Score = 31.6 bits (70), Expect = 1.7
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEI-----ES 170
G +LVS++C Q DLK L+ + HM + L L T+ W G+ I S
Sbjct: 256 GGVLVSLVCLRQTDLKALIAYSSVAHMGIV---LSGLLTMTYWGLSGSYTLMIAHGLCSS 312
Query: 169 GLICKVVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSA 50
GL C +S + L + SMT W+ L S+
Sbjct: 313 GLFCLANVSYERLGSRSMLINKGLLNFMPSMTLWWFLLSS 352
>gb|AAF77378.1| (AF200839) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77389.1| (AF200840) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77403.1| (AF200841) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77416.1| (AF200842) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77429.1| (AF200843) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77442.1| (AF200844) NADH dehydrogenase subunit 4 [Drosophila simulans]
gb|AAF77455.1| (AF200845) NADH dehydrogenase subunit 4 [Drosophila simulans]
Length = 446
Score = 31.6 bits (70), Expect = 1.7
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEI-----ES 170
G +LVS++C Q DLK L+ + HM + L L T+ W G+ I S
Sbjct: 256 GGVLVSLVCLRQTDLKALIAYSSVAHMGIV---LSGLLTMTYWGLSGSYTLMIAHGLCSS 312
Query: 169 GLICKVVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSA 50
GL C +S + L + SMT W+ L S+
Sbjct: 313 GLFCLANVSYERLGSRSMLINKGLLNFMPSMTLWWFLLSS 352
>gb|AAF47594.1| (AE003473) CG12361 gene product [Drosophila melanogaster]
Length = 553
Score = 31.2 bits (69), Expect = 2.2
Identities = 21/70 (30%), Positives = 27/70 (38%)
Frame = +2
Query: 59 QTKPSCHTHHQPPSIVRLQESSHHG*KQRHHHFANQTALYFCPAGSILFPHHQSI*SKKS 238
Q +P H HQP ++ Q S H HHH AG FPH + + +
Sbjct: 14 QQQPHSHPQHQPLAVPGHQHSHPHSHHHHHHHPG---------AGHAHFPHPAFL-THQL 63
Query: 239 STRQRHMLQQ 268
Q H QQ
Sbjct: 64 PPHQHHQQQQ 73
>gb|AAL77148.1|AC090441_7 (AC090441) Putative TNP2 like transposable element [Oryza sativa]
Length = 309
Score = 31.2 bits (69), Expect = 2.2
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = -1
Query: 329 ERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGDVET 201
ER + K YVRN P+GS+ E+Y +E + Y + +T
Sbjct: 27 ERYMAILKGYVRNCTHPKGSMVESYNTEEVVECFIDYLNNGKT 69
>gb|AAG30252.1| (AF305879) NADH dehydrogenase subunit 4 [Aedes japonicus japonicus]
[Ochlerotatus japonicus japonicus]
Length = 155
Score = 30.8 bits (68), Expect = 2.9
Identities = 31/108 (28%), Positives = 45/108 (40%), Gaps = 18/108 (16%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEI-----ES 170
G +LVS++C Q DLK L+ + HM + L L T+ W +G+ I S
Sbjct: 51 GGVLVSLICLWQMDLKALIAYSSVAHMGIV---LSGLMTMTYWGLNGSYTLMIAHGLCSS 107
Query: 169 GLICKVVMS---------LFSTMV*TFLEPHNTWRLVMSMTRWFCLCS 53
GL C +S L + + F+ + W WF LCS
Sbjct: 108 GLFCLANISYERMGSRSLLINKGMLNFMPSLSLW--------WFLLCS 147
>gb|AAF77260.1| (AF200830) NADH dehydrogenase subunit 4 [Drosophila mauritiana]
Length = 446
Score = 30.4 bits (67), Expect = 3.8
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEI-----ES 170
G +LVS++C Q DLK L+ + HM + L L T+ W G+ I S
Sbjct: 256 GGVLVSLVCLRQTDLKALIAYSSVAHMGIV---LSGLLTMTYWGLCGSYTLMIAHGLCSS 312
Query: 169 GLICKVVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSA 50
GL C +S + L + SMT W+ L S+
Sbjct: 313 GLFCLANVSYERLGSRSMLINKGLLNFMPSMTLWWFLLSS 352
>pir||S01187 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - fruit fly
(Drosophila melanogaster) mitochondrion
emb|CAB91059.1| (AJ400907) NADH dehydrogenase subunit 4 [Drosophila melanogaster]
gb|AAF77234.1| (AF200828) NADH dehydrogenase subunit 4 [Drosophila melanogaster]
gb|AAF77246.1| (AF200829) NADH dehydrogenase subunit 4 [Drosophila melanogaster]
Length = 446
Score = 30.4 bits (67), Expect = 3.8
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEI-----ES 170
G +LVS++C Q DLK L+ + HM + L L T+ W G+ I S
Sbjct: 256 GGVLVSLVCLRQTDLKALIAYSSVAHMGIV---LSGLLTMTYWGLCGSYTLMIAHGLCSS 312
Query: 169 GLICKVVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSA 50
GL C +S + L + SMT W+ L S+
Sbjct: 313 GLFCLANVSYERLGSRSMLINKGLLNFMPSMTLWWFLLSS 352
>sp|P18931|NU4M_DROME NADH-ubiquinone oxidoreductase chain 4
Length = 446
Score = 30.4 bits (67), Expect = 3.8
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEI-----ES 170
G +LVS++C Q DLK L+ + HM + L L T+ W G+ I S
Sbjct: 256 GGVLVSLVCLRQTDLKALIAYSSVAHMGIV---LSGLLTMTYWGLCGSYTLMIAHGLCSS 312
Query: 169 GLICKVVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSA 50
GL C +S + L + SMT W+ L S+
Sbjct: 313 GLFCLANVSYERLGSRSMLINKGLLNFMPSMTLWWFLLSS 352
>ref|NP_008285.1|ND4_10704 (NC_001709) NADH dehydrogenase subunit 4 [Drosophila melanogaster]
gb|AAC47819.1| (U37541) NADH dehydrogenase subunit 4 [Drosophila melanogaster]
Length = 446
Score = 30.4 bits (67), Expect = 3.8
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEI-----ES 170
G +LVS++C Q DLK L+ + HM + L L T+ W G+ I S
Sbjct: 256 GGVLVSLVCLRQTDLKALIAYSSVAHMGIV---LSGLLTMTYWGLCGSYTLMIAHGLCSS 312
Query: 169 GLICKVVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSA 50
GL C +S + L + SMT W+ L S+
Sbjct: 313 GLFCLANVSYERLGSRSMLINKGLLNFMPSMTLWWFLLSS 352
>gb|AAA69711.1| (M37275) NADH dehydrogenase 4 [Drosophila melanogaster]
Length = 447
Score = 30.4 bits (67), Expect = 3.8
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = -2
Query: 322 GCLLVSVMCETQQDLKVLL----LKHMSLTSA*LFALDTLVMWKQDGTGRAEI-----ES 170
G +LVS++C Q DLK L+ + HM + L L T+ W G+ I S
Sbjct: 256 GGVLVSLVCLRQTDLKALIAYSSVAHMGIV---LSGLLTMTYWGLCGSYTLMIAHGLCSS 312
Query: 169 GLICKVVMSLFSTMV*TFLEPHNTWRLVMSMTRWFCLCSA 50
GL C +S + L + SMT W+ L S+
Sbjct: 313 GLFCLANVSYERLGSRSMLINKGLLNFMPSMTLWWFLLSS 352
>dbj|BAA82975.2| (AB028946) KIAA1023 protein [Homo sapiens]
Length = 666
Score = 30.4 bits (67), Expect = 3.8
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Frame = +1
Query: 82 SSPASKYCEAPRKFTPWLKTETS-PLCKSDRSLFLPGRFHLVSTSPKYLEQKV------K 240
+SP S Y PRK W T+ + R+ P + L + P L Q + +
Sbjct: 12 TSPKSPYLSKPRKVASWRSLRTAGSMPLGGRASLTPQKLWLGTAKPGSLTQALNSPLTWE 71
Query: 241 HSSTTYASAIEPSGLAVFRT*RLQVSSLLSIGYLPGRPL 357
H+ T FR R + S G++PG P+
Sbjct: 72 HAWTGVPGGTPDCLTDTFRVKRPHLRRSASNGHVPGTPV 110
>gb|AAF05623.1|AF191212_1 (AF191212) orphan nuclear receptor TECdeltaC short isoform [Mus
musculus]
Length = 429
Score = 30.0 bits (66), Expect = 4.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 59 QTKPSCHTHHQPPS----IVRLQESSHHG*KQRHHH 154
+ KPSC + PPS +++++E HG HHH
Sbjct: 70 ELKPSC-LYQMPPSGPRPLIKMEEGREHGYHHHHHH 104
>ref|NP_059048.1| (NM_017352) neuron-derived orphan receptor [Rattus norvegicus]
sp|Q63516|NOR2_RAT NUCLEAR HORMONE RECEPTOR NOR-2 (NEURON-DERIVED ORPHAN RECEPTOR 2)
pir||S66671 neuron-derived receptor NOR-2 - rat
emb|CAA59993.1| (X86003) neuron-derived orphan receptor [Rattus norvegicus]
prf||2121281A NOR-2 protein [Rattus norvegicus]
Length = 430
Score = 30.0 bits (66), Expect = 4.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 59 QTKPSCHTHHQPPS----IVRLQESSHHG*KQRHHH 154
+ KPSC + PPS +++++E HG HHH
Sbjct: 70 ELKPSC-LYQMPPSGPRPLIKMEEGREHGYHHHHHH 104
>gb|AAF58935.1| (AE003833) CG13953 gene product [Drosophila melanogaster]
Length = 254
Score = 30.0 bits (66), Expect = 4.9
Identities = 19/58 (32%), Positives = 24/58 (40%), Gaps = 3/58 (5%)
Frame = +2
Query: 77 HTHHQPPSIVRLQESSHHG*KQRHHH---FANQTALYFCPAGSILFPHHQSI*SKKSS 241
H H Q ++ Q+ HH HHH +Q LYF A HH+ I S S
Sbjct: 175 HHHLQQQQHLQQQQQQHHHHHHHHHHQQLSLHQNHLYFSGASLGHHHHHRQIFSHLQS 232
>ref|NP_056558.1| (NM_015743) nuclear receptor subfamily 4, group A, member 3; neural
orphan receptor 1 [Mus musculus]
gb|AAF05622.1|AF191211_1 (AF191211) orphan nuclear receptor TEC long isoform [Mus musculus]
Length = 627
Score = 30.0 bits (66), Expect = 4.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 59 QTKPSCHTHHQPPS----IVRLQESSHHG*KQRHHH 154
+ KPSC + PPS +++++E HG HHH
Sbjct: 70 ELKPSC-LYQMPPSGPRPLIKMEEGREHGYHHHHHH 104
>gb|AAF79374.1|AC007887_33 (AC007887) F15O4.30 [Arabidopsis thaliana]
Length = 1180
Score = 30.0 bits (66), Expect = 4.9
Identities = 15/43 (34%), Positives = 19/43 (43%)
Frame = -1
Query: 338 YPIERRLLTCKRYVRNTARPEGSIAEAYVVDECLTFCSRYFGD 210
YP ER K +N SI ++Y+ DE F YF D
Sbjct: 809 YPFERFFKKLKGKAKNKRYAASSIVKSYINDEIAYFSEHYFTD 851
>ref|NP_113816.1| (NM_031628) nuclear receptor subfamily 4, group A, member 3 [Rattus
norvegicus]
sp|P51179|NR43_RAT NUCLEAR HORMONE RECEPTOR NOR-1 (NEURON-DERIVED ORPHAN RECEPTOR 1)
pir||JC2493 neuron derived orphan receptor-1 - rat
dbj|BAA07535.1| (D38530) NOR-1 [Rattus norvegicus]
Length = 628
Score = 30.0 bits (66), Expect = 4.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 59 QTKPSCHTHHQPPS----IVRLQESSHHG*KQRHHH 154
+ KPSC + PPS +++++E HG HHH
Sbjct: 70 ELKPSC-LYQMPPSGPRPLIKMEEGREHGYHHHHHH 104
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,647,277
Number of Sequences: 922381
Number of extensions: 4211060
Number of successful extensions: 12821
Number of sequences better than 10.0: 226
Number of HSP's better than 10.0 without gapping: 12383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12759
length of database: 289,601,141
effective HSP length: 95
effective length of database: 201,974,946
effective search space used: 4847398704
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)