The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_A12_T7.seq Fgr-S3_1_A12_T7 LENGTH:399bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A12 ; CLONELIB: n/a
(399 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_508292.1| (NM_075891) K06A9.1b.p [Caenorhabditis ele... 33 0.55
ref|NP_356945.1| (NC_003063) AGR_L_2330p [Agrobacterium tum... 33 0.55
ref|NP_487791.1| (NC_003272) ferrochelatase [Nostoc sp. PCC... 32 1.2
ref|XP_069632.2| (XM_069632) hypothetical protein XP_069632... 32 1.2
ref|XP_090927.1| (XM_090927) hypothetical protein XP_090927... 31 2.7
ref|XP_092437.1| (XM_092437) hypothetical protein XP_092437... 30 4.6
gb|AAF32334.1|AF218939_2 (AF218939) FenI [Bacillus subtilis] 30 4.6
ref|XP_089987.1| (XM_089987) hypothetical protein XP_089987... 30 4.6
ref|XP_066322.1| (XM_066322) hypothetical protein XP_066322... 30 6.0
gb|AAF36607.1|AF221767_1 (AF221767) PfEMP1 protein [Plasmod... 30 6.0
ref|NP_614708.1| (NC_003551) Predicted membrane protein con... 29 7.9
ref|NP_115265.1| (NM_032094) protocadherin gamma subfamily ... 29 7.9
ref|NP_003726.1| (NM_003735) protocadherin gamma subfamily ... 29 7.9
ref|NP_595354.1| (NC_003423) hypothetical coiled coil prote... 29 7.9
>ref|NP_508292.1| (NM_075891) K06A9.1b.p [Caenorhabditis elegans]
pir||T34434 hypothetical protein K06A9.1a - Caenorhabditis elegans
gb|AAC70890.1| (U80846) Hypothetical protein K06A9.1b [Caenorhabditis elegans]
Length = 2232
Score = 33.1 bits (74), Expect = 0.55
Identities = 23/70 (32%), Positives = 31/70 (43%)
Frame = +1
Query: 1 SSGRPGR*KTSVCPSIPHSYTVGGKTNSTRPKSMEANIFNRGRFVTSLRHDKTALPVSPV 180
SSG PG TS+ PS S T+G ST P V+++ T P S
Sbjct: 1010 SSGSPGTTLTSISPSPSPSSTIGSSQGSTSP------------VVSTISQGSTETPGSTG 1057
Query: 181 HTLWAPTTLS 210
T+ P+T+S
Sbjct: 1058 STVTKPSTVS 1067
>ref|NP_356945.1| (NC_003063) AGR_L_2330p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534167.1| (NC_003305) monooxygenase [Agrobacterium tumefaciens str. C58 (U.
Washington)]
gb|AAK89730.1| (AE008317) AGR_L_2330p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44483.1| (AE009295) monooxygenase [Agrobacterium tumefaciens str. C58 (U.
Washington)]
Length = 355
Score = 33.1 bits (74), Expect = 0.55
Identities = 18/42 (42%), Positives = 23/42 (53%), Gaps = 1/42 (2%)
Frame = -2
Query: 341 GTRLSEIWESYELSPRLKFGRLVSW-G*DGNLASCQYLPRAI 219
G R S +W SYE RL G VS+ DGN+ + LPR +
Sbjct: 122 GNRRSTMWRSYEQITRLLAGEAVSFEDADGNIVEAKTLPRPV 163
>ref|NP_487791.1| (NC_003272) ferrochelatase [Nostoc sp. PCC 7120]
sp|Q8YQR8|HEMZ_ANASP Ferrochelatase (Protoheme ferro-lyase) (Heme synthetase)
dbj|BAB75450.1| (AP003594) ferrochelatase [Nostoc sp. PCC 7120]
Length = 388
Score = 32.0 bits (71), Expect = 1.2
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 164 RAVLSCLSEVTNLPLLKIFASIDFGRVEFVFPPTVYEWGMEGQTEVFH 21
RA+ + + N P K+ + ++ ++PP +EWGM EV++
Sbjct: 312 RALADLVIDALNKPSFKLSQAAQIKKMVKMYPPESWEWGMTSSAEVWN 359
>ref|XP_069632.2| (XM_069632) hypothetical protein XP_069632 [Homo sapiens]
Length = 763
Score = 32.0 bits (71), Expect = 1.2
Identities = 23/56 (41%), Positives = 28/56 (49%)
Frame = +1
Query: 133 VTSLRHDKTALPVSPVHTLWAPTTLSSPEIALGKYWQDARLPSYPQLTRRPNFKRG 300
V+SLR A PV P+ L P T +P A G +A SYP L RRP + G
Sbjct: 649 VSSLRPAAMARPVRPILAL--PDTKVAP--AEGTVCTEASTSSYPSLQRRPQERAG 700
>ref|XP_090927.1| (XM_090927) hypothetical protein XP_090927 [Homo sapiens]
Length = 909
Score = 30.8 bits (68), Expect = 2.7
Identities = 17/44 (38%), Positives = 22/44 (49%)
Frame = +1
Query: 193 APTTLSSPEIALGKYWQDARLPSYPQLTRRPNFKRGLSS*LSHI 324
AP L SP +WQDA PS+ Q T R +F S +H+
Sbjct: 13 APAGLPSPA-----HWQDATPPSHSQTTSRNSFLHSTQSTYAHV 51
>ref|XP_092437.1| (XM_092437) hypothetical protein XP_092437 [Homo sapiens]
Length = 753
Score = 30.0 bits (66), Expect = 4.6
Identities = 21/54 (38%), Positives = 25/54 (45%), Gaps = 5/54 (9%)
Frame = +1
Query: 163 LPVSPVHTLWAPTTLSSP-----EIALGKYWQDARLPSYPQLTRRPNFKRGLSS 309
LP+ TL PT LS P I L K+ A LPS P + P F R S+
Sbjct: 135 LPLRGSGTLSVPTRLSGPCRNDVSIILRKWASRASLPSIPISRQEPRFARHASA 188
>gb|AAF32334.1|AF218939_2 (AF218939) FenI [Bacillus subtilis]
Length = 510
Score = 30.0 bits (66), Expect = 4.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 208 SSPEIALGKYWQDARLPSYPQLTRRPNFKRGLSS*LSHISDRRVPKT 348
S P + W D++ P P+LT+ P R L H S+R+ +T
Sbjct: 401 SQPALVPDMPWLDSKAPKKPKLTKVPQTIRNLLHIQDHPSNRKTKET 447
>ref|XP_089987.1| (XM_089987) hypothetical protein XP_089987 [Homo sapiens]
Length = 312
Score = 30.0 bits (66), Expect = 4.6
Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 31 SVCPSIPHSYTV--GGKTNSTRP-KSMEANIFNRGRFVTSLRHDKTALPVSPVHTLWAPT 201
+ CP+ + T KT++T+P M N+ T+ RH TA P++P +W P
Sbjct: 130 TACPTNVVNLTTLRSSKTSTTKPCPPMSTNL------TTTARHGITAEPMAPQALVWLPL 183
Query: 202 TLSSP 216
SP
Sbjct: 184 KAPSP 188
>ref|XP_066322.1| (XM_066322) hypothetical protein XP_066322 [Homo sapiens]
Length = 236
Score = 29.6 bits (65), Expect = 6.0
Identities = 16/30 (53%), Positives = 18/30 (59%), Gaps = 3/30 (10%)
Frame = +2
Query: 164 YLSA---PFIHCGLQPPSPRPKSLWANIGK 244
Y+SA P CGL PP P PKSLW + K
Sbjct: 2 YMSAADFPECTCGLWPPPP-PKSLWGPLSK 30
>gb|AAF36607.1|AF221767_1 (AF221767) PfEMP1 protein [Plasmodium falciparum]
Length = 120
Score = 29.6 bits (65), Expect = 6.0
Identities = 14/27 (51%), Positives = 19/27 (69%), Gaps = 1/27 (3%)
Frame = -3
Query: 85 SSLFFRPPCMNGEW-RDKQRSFTCPGG 8
S+ +FRP C++GEW +DK R CP G
Sbjct: 82 SAQYFRPTCVSGEWAKDKCR---CPKG 105
>ref|NP_614708.1| (NC_003551) Predicted membrane protein conserved in archaea
[Methanopyrus kandleri AV19]
gb|AAM02638.1| (AE010435) Predicted membrane protein conserved in archaea
[Methanopyrus kandleri AV19]
Length = 241
Score = 29.3 bits (64), Expect = 7.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 371 GGRGTRNHVFGTRLSEIWESYELSP 297
GG GT + VF T L+ +W +Y LSP
Sbjct: 213 GGAGTFDAVFVTGLTAVWIAYVLSP 237
>ref|NP_115265.1| (NM_032094) protocadherin gamma subfamily A, 12, isoform 2
precursor; cadherin 21; fibroblast cadherin FIB3 [Homo
sapiens]
gb|AAD43767.1|AF152506_1 (AF152506) protocadherin gamma A12 short form protein [Homo
sapiens]
Length = 820
Score = 29.3 bits (64), Expect = 7.9
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 317 ESYELSPRLKFGRLVSWG*DGNLASCQYLPRAISGEER 204
+SYELSP F +V G DG+ L RA+ EE+
Sbjct: 168 QSYELSPNTHFSLIVQNGADGSKYPELVLKRALDREEK 205
>ref|NP_003726.1| (NM_003735) protocadherin gamma subfamily A, 12, isoform 1
precursor; cadherin 21; fibroblast cadherin FIB3 [Homo
sapiens]
dbj|BAA25514.1| (AB011160) KIAA0588 protein [Homo sapiens]
gb|AAD43715.1| (AF152321) protocadherin gamma A12 [Homo sapiens]
Length = 932
Score = 29.3 bits (64), Expect = 7.9
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 317 ESYELSPRLKFGRLVSWG*DGNLASCQYLPRAISGEER 204
+SYELSP F +V G DG+ L RA+ EE+
Sbjct: 168 QSYELSPNTHFSLIVQNGADGSKYPELVLKRALDREEK 205
>ref|NP_595354.1| (NC_003423) hypothetical coiled coil protein; similar to C-term of
nuclear migration protein [Schizosaccharomyces pombe]
pir||T39908 probable coiled coil protein - fission yeast (Schizosaccharomyces
pombe)
emb|CAB40162.1| (AL049558) hypothetical coiled coil protein; similar to C-term of
nuclear migration protein [Schizosaccharomyces pombe]
Length = 968
Score = 29.3 bits (64), Expect = 7.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 30 LCLSLHSPFIHGGRKNKLDSAEIDG 104
LC S +PFI GRKN++ S +I G
Sbjct: 883 LCWSKTNPFIEKGRKNQVKSVKIKG 907
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,844,151
Number of Sequences: 922381
Number of extensions: 6128429
Number of successful extensions: 14178
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14177
length of database: 289,601,141
effective HSP length: 108
effective length of database: 189,983,993
effective search space used: 4559615832
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)