The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.

BLASTX 2.2.3 [Apr-24-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Fgr-S3_1_A13_T7.seq Fgr-S3_1_A13_T7 LENGTH:617bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A13 ; CLONELIB: n/a 
         (617 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
           922,381 sequences; 289,601,141 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_492533.1|  (NM_060132) Homeobox domain [Caenorhabditi...    31   9.8  

>ref|NP_492533.1| (NM_060132) Homeobox domain [Caenorhabditis elegans]
 sp|Q93348|IRXH_CAEEL PUTATIVE IROQUOIS-CLASS HOMEOBOX PROTEIN C36F7.1
 pir||T19792 hypothetical protein C36F7.1 - Caenorhabditis elegans
 emb|CAB02816.1| (Z81045) predicted using Genefinder~Similarity to Drosophila
           araucan homeoprotein (TR:E218676), contains similarity
           to Pfam domain: PF00046 (Homeobox domain), Score=24.7,
           E-value=4.3e-05, N=1~cDNA EST yk423f11.5 comes from this
           gene~cDNA EST yk293d7.5 >
          Length = 356

 Score = 30.8 bits (68), Expect = 9.8
 Identities = 20/56 (35%), Positives = 26/56 (45%), Gaps = 5/56 (8%)
 Frame = +1

Query: 40  TLSVAPEHQMFPFKWPIVGALPAQFLGRGPGPLPI-----NRTSHPRGRGKSRREN 192
           TL+  P   MFP   P     P   LG GPGP+P+     +R  HP G    ++ N
Sbjct: 67  TLAGFPGVPMFPHGIP-ADLKPEMLLGGGPGPMPMFFSDAHRLYHPYGLDGIKKRN 121



  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  May 11, 2002  4:54 AM
  Number of letters in database: 289,601,141
  Number of sequences in database:  922,381
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.267   0.0410 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 362,407,789
Number of Sequences: 922381
Number of extensions: 8218181
Number of successful extensions: 17822
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17815
length of database: 289,601,141
effective HSP length: 115
effective length of database: 183,527,326
effective search space used: 16517459340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)