The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_A13_T7.seq Fgr-S3_1_A13_T7 LENGTH:617bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A13 ; CLONELIB: n/a
(617 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115... 254 1e-64
emb|Z75569.1|PSR2130 T.aestivum telomere-associated DNA (cl... 78 1e-11
gb|AF326781.1|AF326781 Triticum monococcum actin (ACT-1) ge... 60 3e-06
gb|AF090447.2|AF090447 Zea mays chromosome 4 clone cosmid I... 50 0.003
gb|AF031569.1|AF031569 Zea mays chromosome 4 map 4s 50 0.003
dbj|AP003331.3| Oryza sativa (japonica cultivar-group) geno... 48 0.011
gb|AF466199.1|AF466199 Sorghum bicolor putative receptor pr... 46 0.044
emb|AL033127.1|SPCC622 S.pombe chromosome III cosmid c622 44 0.17
dbj|AP002861.2| Oryza sativa (japonica cultivar-group) geno... 44 0.17
gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbar... 40 2.7
gb|AC113339.1| Genomic sequence for Oryza sativa (japonica ... 40 2.7
gb|AC098682.1| Genomic sequence for Oryza sativa, Nipponbar... 40 2.7
gb|AC084766.8| Oryza sativa chromosome 3 clone OSJNBb0048D2... 40 2.7
gb|AC092173.3| Oryza sativa chromosome 10 clone OSJNBa0095J... 40 2.7
gb|AC091238.2| Oryza sativa chromosome 10 clone OSJNBb0022I... 40 2.7
gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, N... 40 2.7
emb|AL359701.27|AL359701 Human DNA sequence from clone RP5-... 40 2.7
emb|AL035106.28|HS998C11 Human DNA sequence from clone RP5-... 40 2.7
dbj|AP003411.3| Oryza sativa (japonica cultivar-group) geno... 40 2.7
dbj|AP003044.1| Oryza sativa (japonica cultivar-group) geno... 40 2.7
dbj|AP003611.3| Oryza sativa (japonica cultivar-group) geno... 40 2.7
dbj|AP003450.3| Oryza sativa (japonica cultivar-group) geno... 40 2.7
dbj|AP003338.2| Oryza sativa (japonica cultivar-group) geno... 40 2.7
dbj|AP003289.3| Oryza sativa (japonica cultivar-group) geno... 40 2.7
dbj|AP002867.1| Oryza sativa (japonica cultivar-group) geno... 40 2.7
dbj|AP000399.1| Oryza sativa (japonica cultivar-group) geno... 40 2.7
dbj|AP004145.2| Oryza sativa (japonica cultivar-group) geno... 40 2.7
emb|AL008734.10|HS324M8 Human DNA sequence from clone 324M8... 40 2.7
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence
Length = 215241
Score = 254 bits (128), Expect = 1e-64
Identities = 172/184 (93%), Gaps = 2/184 (1%)
Strand = Plus / Minus
Query: 260 agggcgagtgaactcctcctagcagttcatccccccagccaagaacaaaccctcgcgagg 319
||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 16389 agggcgactgaactcctcctagcagttcatcgccccagccaagaacagaccctcgcgagg 16330
Query: 320 ctgttcttccttgtattgctcatcatcgtcag-cccaagaggcaatccaccacaccacac 378
|||||||||||||||||| |||||||| ||| |||||||||||||||| | ||||||||
Sbjct: 16329 ctgttcttccttgtattgttcatcatcaccagccccaagaggcaatccatc-caccacac 16271
Query: 379 actggagtagggtattacaccacaacggtggcccgaaccagtataaaccctgtgtctctt 438
||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct: 16270 actggagtagggtattacaccacaatggtggcccgaaccagtataaatcttgtgtctctt 16211
Query: 439 gtgt 442
||||
Sbjct: 16210 gtgt 16207
Score = 87.7 bits (44), Expect = 1e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 504 atctccgcgcgcatcccagtgttcgaacctcaagtgtctgccggaacccgaaatccgaca 563
|||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 16156 atctccgcacgcaccccagtgttcgaaccttaagggtctgccggaacccgaaatccgaca 16097
Score = 73.8 bits (37), Expect = 2e-10
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Minus
Query: 88 attgttggcgcccttcccgctcaatttttgggaagaggcccagggcctttgcctataaat 147
||||||||| |||||||||||| || |||||||||||| |||||||| |||||||||
Sbjct: 16565 attgttggctcccttcccgctcgatatttgggaagaggaccagggcc----cctataaat 16510
Query: 148 aggactagcc 157
||||||||||
Sbjct: 16509 aggactagcc 16500
>emb|Z75569.1|PSR2130 T.aestivum telomere-associated DNA (clone PSR2130)
Length = 256
Score = 77.8 bits (39), Expect = 1e-11
Identities = 57/62 (91%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 357 gaggcaatccaccacaccacacactggagtagggtattacaccacaacggtggcccgaac 416
|||||||||||| ||||||||| | || |||||||||||||||||||||||||||||||
Sbjct: 139 gaggcaatccactacaccacac--tagattagggtattacaccacaacggtggcccgaac 82
Query: 417 ca 418
||
Sbjct: 81 ca 80
>gb|AF326781.1|AF326781 Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
condensation factor (CCF), putative resistance protein
(RGA-2), putative resistance protein (RGA2) and putative
nodulin-like-like protein (NLL) gene, complete cds; and
retrotransp>
Length = 211009
Score = 60.0 bits (30), Expect = 3e-06
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 24 caccccctaatccaggactctctcagtagcccctgaac 61
|||||||||||||||||||| |||| ||||||||||||
Sbjct: 103584 caccccctaatccaggactccctcaatagcccctgaac 103621
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 cgaacaccccctaatccaggactc 43
||||||||||||||||| ||||||
Sbjct: 146093 cgaacaccccctaatcctggactc 146116
>gb|AF090447.2|AF090447 Zea mays chromosome 4 clone cosmid II.2E10 map 4s
Length = 346296
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 374 cacacactggagtagggtattacac 398
|||||||||||||||||||||||||
Sbjct: 173155 cacacactggagtagggtattacac 173179
>gb|AF031569.1|AF031569 Zea mays chromosome 4 map 4s
Length = 78101
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 374 cacacactggagtagggtattacac 398
|||||||||||||||||||||||||
Sbjct: 26824 cacacactggagtagggtattacac 26848
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1088D01
Length = 146144
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 373 ccacacactggagtagggtattac 396
||||||||||||||||||||||||
Sbjct: 49089 ccacacactggagtagggtattac 49112
>gb|AF466199.1|AF466199 Sorghum bicolor putative receptor protein kinase,
aminoalcoholphosphotransferase, putative growth-regulating
factor 1, putative GAG-POL precursor, putative GAG-POL
precursor, putative RIRE2 orf3, putative anthocyanin
regulatory C1, putative protein T30>
Length = 144159
Score = 46.1 bits (23), Expect = 0.044
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 407 tggcccgaaccagtataaaccct 429
|||||||||||||||||||||||
Sbjct: 81113 tggcccgaaccagtataaaccct 81135
Score = 46.1 bits (23), Expect = 0.044
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 407 tggcccgaaccagtataaaccct 429
|||||||||||||||||||||||
Sbjct: 65900 tggcccgaaccagtataaaccct 65922
>emb|AL033127.1|SPCC622 S.pombe chromosome III cosmid c622
Length = 40901
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 433 tctcttgtgttgttctttccat 454
||||||||||||||||||||||
Sbjct: 23282 tctcttgtgttgttctttccat 23303
>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0665D10
Length = 134967
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 373 ccacacactggagtagggtattacac 398
|||||||| |||||||||||||||||
Sbjct: 38367 ccacacacaggagtagggtattacac 38392
>gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0082N11, from chromosome 10, complete sequence [Oryza
sativa (japonica cultivar-group)]
Length = 127525
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 125715 ccacacacaggagtagggtattac 125692
>gb|AC113339.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
Nipponbare clone OSJNBb0047B19, from chromosome 10,
complete sequence
Length = 137015
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 58190 ccacacacaggagtagggtattac 58167
>gb|AC098682.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0004A10, from chromosome 10, complete sequence
[Oryza sativa (japonica cultivar-group)]
Length = 144271
Score = 40.1 bits (20), Expect = 2.7
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 ccacaacggtggcccgaaccagtataaa 425
|||| |||| ||||||||||||||||||
Sbjct: 5753 ccaccacggaggcccgaaccagtataaa 5726
>gb|AC084766.8| Oryza sativa chromosome 3 clone OSJNBb0048D20 map near Y3870R, complete
sequence
Length = 130306
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 68209 ccacacacaggagtagggtattac 68186
>gb|AC092173.3| Oryza sativa chromosome 10 clone OSJNBa0095J15, complete sequence
Length = 156023
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 135146 ccacacacaggagtagggtattac 135123
>gb|AC091238.2| Oryza sativa chromosome 10 clone OSJNBb0022I16, complete sequence
Length = 127068
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 26573 ccacacacaggagtagggtattac 26550
>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0065C16, from Chromosome 10, complete sequence
[Oryza sativa (japonica cultivar-group)]
Length = 146391
Score = 40.1 bits (20), Expect = 2.7
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 ccacaacggtggcccgaaccagtataaa 425
|||| |||| ||||||||||||||||||
Sbjct: 95297 ccaccacggaggcccgaaccagtataaa 95270
>emb|AL359701.27|AL359701 Human DNA sequence from clone RP5-876C12 on chromosome 1, complete
sequence [Homo sapiens]
Length = 78153
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 587 gtggttcatagaggacagaaatgg 610
|||||||| |||||||||||||||
Sbjct: 60343 gtggttcagagaggacagaaatgg 60320
>emb|AL035106.28|HS998C11 Human DNA sequence from clone RP5-998C11 on chromosome 20q13.13-13.2
Contains part of the KIAA1415 gene, ESTs, STSs and GSSs,
complete sequence [Homo sapiens]
Length = 131007
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 116 tgggaagaggcccagggcct 135
||||||||||||||||||||
Sbjct: 64504 tgggaagaggcccagggcct 64485
>dbj|AP003411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1148D12
Length = 132059
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 9906 ccacacacaggagtagggtattac 9929
>dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0038C05
Length = 152941
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 139712 ccacacacaggagtagggtattac 139735
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0423B08
Length = 151490
Score = 40.1 bits (20), Expect = 2.7
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 398 ccacaacggtggcccgaaccagtataaa 425
|||| |||| ||||||||||||||||||
Sbjct: 138713 ccaccacggaggcccgaaccagtataaa 138686
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0034C09
Length = 170226
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 155888 ccacacacaggagtagggtattac 155911
>dbj|AP003338.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1212_B09
Length = 112222
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 60975 ccacacacaggagtagggtattac 60998
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0683F02
Length = 153388
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 67083 ccacacacaggagtagggtattac 67060
>dbj|AP002867.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0463F06
Length = 144322
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 24955 ccacacacaggagtagggtattac 24978
>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
clone:P0535G04
Length = 154180
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 45822 ccacacacaggagtagggtattac 45845
>dbj|AP004145.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0047F09
Length = 79652
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 373 ccacacactggagtagggtattac 396
|||||||| |||||||||||||||
Sbjct: 56290 ccacacacaggagtagggtattac 56267
>emb|AL008734.10|HS324M8 Human DNA sequence from clone 324M8 on chromosome 1p36.2-36.3 Contains
ESTs, GSSs and CpG Island, complete sequence [Homo
sapiens]
Length = 85116
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 290 ccccccagccaagaacaaaccctc 313
|||||||||| |||||||||||||
Sbjct: 57592 ccccccagcctagaacaaaccctc 57615
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,410,021
Number of Sequences: 1217082
Number of extensions: 1410021
Number of successful extensions: 26481
Number of sequences better than 10.0: 28
length of query: 617
length of database: 5,500,847,177
effective HSP length: 21
effective length of query: 596
effective length of database: 5,475,288,455
effective search space: 3263271919180
effective search space used: 3263271919180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)