The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_A20_T7.seq Fgr-S3_1_A20_T7 LENGTH:169bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A20 ; CLONELIB: n/a
(169 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44242.1| (AJ315794) Ribosomal protein S7 [Hordeum vu... 50 5e-06
ref|NP_186905.1| (NM_111124) putative 40S ribosomal protein... 45 2e-04
sp|Q9XH45|RS7_BRAOL 40S ribosomal protein S7 >gi|5532505|gb... 43 0.001
gb|AAD26256.1|AF118149_1 (AF118149) ribosomal protein S7 [S... 42 0.001
ref|NP_197117.1| (NM_121618) 40S ribosomal protein S7-like ... 40 0.005
sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 >gi|3851636|gb... 40 0.006
ref|NP_175314.1| (NM_103777) 40S ribosomal protein S7 homol... 39 0.018
ref|NP_177856.1| (NM_106381) hypothetical protein [Arabidop... 31 3.7
>emb|CAC44242.1| (AJ315794) Ribosomal protein S7 [Hordeum vulgare subsp. vulgare]
Length = 191
Score = 50.4 bits (119), Expect = 5e-06
Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 11/48 (22%)
Frame = -1
Query: 124 HPPIKIRSPILDVHLQ-----------DVVFVATRRIVRPPKKGSAVQ 14
H P ++R P +H++ DVVFVATRRIVRPPKKGSAVQ
Sbjct: 64 HVPYRLRKPFRKIHVRLVRELERVSGKDVVFVATRRIVRPPKKGSAVQ 111
>ref|NP_186905.1| (NM_111124) putative 40S ribosomal protein [Arabidopsis thaliana]
gb|AAF32463.1| (AC021640) putative 40S ribosomal protein [Arabidopsis thaliana]
gb|AAL06499.1|AF412046_1 (AF412046) AT3g02560/F16B3_19 [Arabidopsis thaliana]
gb|AAL16184.1|AF428416_1 (AF428416) AT3g02560/F16B3_19 [Arabidopsis thaliana]
gb|AAL32751.1| (AY062673) putative 40S ribosomal protein [Arabidopsis thaliana]
gb|AAL62007.1| (AY072616) AT3g02560/F16B3_19 [Arabidopsis thaliana]
Length = 191
Score = 44.7 bits (104), Expect = 2e-04
Identities = 23/47 (48%), Positives = 29/47 (60%), Gaps = 12/47 (25%)
Frame = -1
Query: 118 PIKIRSPILDVHLQ------------DVVFVATRRIVRPPKKGSAVQ 14
P ++R +HL+ DV+FVATRRI+RPPKKGSAVQ
Sbjct: 66 PFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAVQ 112
>sp|Q9XH45|RS7_BRAOL 40S ribosomal protein S7
gb|AAD44761.1|AF144752_1 (AF144752) 40S ribosomal protein S7 homolog [Brassica oleracea]
Length = 191
Score = 42.7 bits (99), Expect = 0.001
Identities = 19/21 (90%), Positives = 21/21 (99%)
Frame = -1
Query: 76 DVVFVATRRIVRPPKKGSAVQ 14
DV+FVATRRI+RPPKKGSAVQ
Sbjct: 92 DVIFVATRRIMRPPKKGSAVQ 112
>gb|AAD26256.1|AF118149_1 (AF118149) ribosomal protein S7 [Secale cereale]
Length = 192
Score = 42.4 bits (98), Expect = 0.001
Identities = 23/48 (47%), Positives = 28/48 (57%), Gaps = 12/48 (25%)
Frame = -1
Query: 124 HPPIKIRSPILDVHLQ------------DVVFVATRRIVRPPKKGSAV 17
H P ++R +H++ DVV VATRRIVRPPKKGSAV
Sbjct: 64 HVPYRLRKNFRKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV 111
>ref|NP_197117.1| (NM_121618) 40S ribosomal protein S7-like [Arabidopsis thaliana]
pir||T51483 40S ribosomal protein S7-like - Arabidopsis thaliana
emb|CAC01854.1| (AL391148) 40S ribosomal protein S7-like [Arabidopsis thaliana]
Length = 190
Score = 40.4 bits (93), Expect = 0.005
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = -1
Query: 79 QDVVFVATRRIVRPPKKGSAVQ 14
+DV+FV TRRI+RPPKKG+AVQ
Sbjct: 91 KDVIFVTTRRIMRPPKKGAAVQ 112
>sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7
gb|AAC97947.1| (AF098519) unknown [Avicennia marina]
gb|AAD03501.1| (AF056316) 40S ribosome protein S7 [Avicennia marina]
Length = 190
Score = 40.0 bits (92), Expect = 0.006
Identities = 21/49 (42%), Positives = 28/49 (56%), Gaps = 12/49 (24%)
Frame = -1
Query: 124 HPPIKIRSPILDVHLQ------------DVVFVATRRIVRPPKKGSAVQ 14
H P ++R +H + +VV +ATRRI+RPPKKGSAVQ
Sbjct: 64 HVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGSAVQ 112
>ref|NP_175314.1| (NM_103777) 40S ribosomal protein S7 homolog, putative [Arabidopsis
thaliana]
gb|AAG50658.1|AC084242_2 (AC084242) 40S ribosomal protein S7 homolog, putative [Arabidopsis
thaliana]
gb|AAG60128.1|AC073555_12 (AC073555) 40S ribosomal protein S7 homolog, putative [Arabidopsis
thaliana]
gb|AAL06501.1|AF412048_1 (AF412048) At1g48830/T24P22_5 [Arabidopsis thaliana]
gb|AAL62008.1| (AY072617) At1g48830/T24P22_5 [Arabidopsis thaliana]
Length = 191
Score = 38.5 bits (88), Expect = 0.018
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = -1
Query: 79 QDVVFVATRRIVRPPKKGSAVQ 14
+DV+ +ATRRIVRPPKKGSA +
Sbjct: 91 KDVILIATRRIVRPPKKGSAAK 112
>ref|NP_177856.1| (NM_106381) hypothetical protein [Arabidopsis thaliana]
gb|AAG29194.1|AC078898_4 (AC078898) hypothetical protein [Arabidopsis thaliana]
Length = 783
Score = 30.8 bits (68), Expect = 3.7
Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 5/41 (12%)
Frame = -3
Query: 125 SSPDQNKIAD---PGCAFAG--CCLCCNKKDREATQEGFCC 18
+SPD K D GC G C L C K+ R Q GF C
Sbjct: 56 ASPDHEKFKDLKAKGCNLIGPQCALFCAKEGRPLPQRGFTC 96
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,192,235
Number of Sequences: 922381
Number of extensions: 1873585
Number of successful extensions: 4191
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4185
length of database: 289,601,141
effective HSP length: 31
effective length of database: 261,007,330
effective search space used: 6264175920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)