The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_A21_T7.seq Fgr-S3_1_A21_T7 LENGTH:279bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A21 ; CLONELIB: n/a
(279 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115... 363 6e-98
gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex B... 188 2e-45
emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 pr... 48 0.005
dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in... 42 0.30
dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in... 42 0.30
gb|AE006102.1|AE006102 Pasteurella multocida PM70 section 6... 40 1.2
gb|AF274869.1|AF274869 Pasteurella multocida 40 1.2
gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33 40 1.2
emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04... 40 1.2
dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in... 40 1.2
dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in... 40 1.2
gb|AC079310.20| Homo sapiens 12 BAC RP11-850F7 (Roswell Par... 38 4.6
gb|AE010826.1| Methanosarcina acetivorans str. C2A, section... 38 4.6
gb|AC104694.3| Homo sapiens BAC clone RP11-337M10 from 2, c... 38 4.6
gb|AC096951.2| Homo sapiens chromosome 1 clone RP4-739M21, ... 38 4.6
gb|AC012186.6| Homo sapiens chromosome 16 clone RP11-93O14,... 38 4.6
gb|AE000665.1|MMAE000665 Mus musculus chromosome 6 38 4.6
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 38 4.6
gb|AC010276.6|AC010276 Homo sapiens chromosome 5 clone CTC-... 38 4.6
gb|AC007190.4|AC007190 Arabidopsis thaliana chromosome 1, c... 38 4.6
emb|AL691454.14| Mouse DNA sequence from clone RP23-423P8 o... 38 4.6
emb|AL355306.10|AL355306 Human DNA sequence from clone RP5-... 38 4.6
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 38 4.6
emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BA... 38 4.6
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 38 4.6
emb|AL161612.13|AL161612 Human DNA sequence from clone RP11... 38 4.6
gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA seq... 38 4.6
emb|AL442183.4|CNS07ECU Human chromosome 14 DNA sequence BA... 38 4.6
gb|AF107342.1|AF107342 Mus musculus chromosome 6 clone cosm... 38 4.6
emb|AL353684.8|AL353684 Human DNA sequence from clone RP11-... 38 4.6
emb|AL137182.9|AL137182 Human DNA sequence from clone RP1-2... 38 4.6
emb|AL445604.9|AL445604 Human DNA sequence from clone RP11-... 38 4.6
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 38 4.6
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 38 4.6
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 38 4.6
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 38 4.6
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 38 4.6
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 38 4.6
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 38 4.6
emb|AL136234.12|AL136234 Human DNA sequence from clone RP5-... 38 4.6
emb|AL136374.4|AL136374 Human DNA sequence from clone RP1-2... 38 4.6
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 38 4.6
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 38 4.6
emb|AL035409.15|HS564M11 Human DNA sequence from clone RP4-... 38 4.6
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 38 4.6
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 38 4.6
dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in... 38 4.6
dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in... 38 4.6
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 38 4.6
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence
Length = 215241
Score = 363 bits (183), Expect = 6e-98
Identities = 238/255 (93%), Gaps = 1/255 (0%)
Strand = Plus / Minus
Query: 25 gtcgtgcaggtgaaaggcaattatgacaatatatgatggactgactgagatgagaaaagc 84
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 145153 gtcgtgcaagtgaaaggcaattatgacgatatatgatggactgactgagatgagaaaagc 145094
Query: 85 tggtatgaactcaacctctcttgtttttgtaaatatgattagttcatcgttcctgattca 144
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 145093 tggtatgaactcgacctctcttgtttttgtcaatatgattagttcatcgttcctgattca 145034
Query: 145 tcctattatgaaagaaacatatttgcaatgacaattagagattatagttgcttacgccat 204
||||||||| || |||||| |||| |||||||| ||||||| |||||| ||| | |||
Sbjct: 145033 gcctattatg-aataaacatgtttgaaatgacaactagagatcatagtttcttgtgtcat 144975
Query: 205 gcttaattagctaggagcttataatggtttaccttgcgtgccaacatgatattaaaatgg 264
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 144974 gcttgattagctaggagcttataatggtttaccttgcgtgccaacatgctattaaaatgg 144915
Query: 265 ttgtgatgtggtatg 279
|||||||||||||||
Sbjct: 144914 ttgtgatgtggtatg 144900
Score = 270 bits (136), Expect = 7e-70
Identities = 231/260 (88%), Gaps = 2/260 (0%)
Strand = Plus / Minus
Query: 20 gttcagtcgtgcaggtgaaaggcaattatgacaatatatgatggactgactgagatgaga 79
|||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 64102 gttcggtcgtgcaagtgaaaggcaattatgatgatatatgatggactgactgagatgaga 64043
Query: 80 aaagctggtatgaactcaacctctcttgtttttgtaaatatgattagttcatcgttcctg 139
||||||||||||||||| |||||| ||||||||||||||||||| ||| | |||||| ||
Sbjct: 64042 aaagctggtatgaactcgacctcttttgtttttgtaaatatgatgagtccctcgttcttg 63983
Query: 140 attcatcctattatgaaagaaacatatttgcaatgacaattagagattatagttgcttac 199
||||| | ||||||| || |||||| ||||||||||||||||||||| || |||||||
Sbjct: 63982 attcagcttattatg-aataaacatgtttgcaatgacaattagagatcattgttgcttgt 63924
Query: 200 gccatgcttaattagctaggagcttataatggtttaccttgcgtgccaacatgatattaa 259
||||||||| |||||||| ||| |||||||| ||||||||| ||||||||||| |||| |
Sbjct: 63923 gccatgcttgattagctatgag-ttataatgatttaccttgtgtgccaacatgctattga 63865
Query: 260 aatggttgtgatgtggtatg 279
||| || ||||||||||||
Sbjct: 63864 gatgattatgatgtggtatg 63845
Score = 262 bits (132), Expect = 2e-67
Identities = 230/260 (88%), Gaps = 2/260 (0%)
Strand = Plus / Plus
Query: 20 gttcagtcgtgcaggtgaaaggcaattatgacaatatatgatggactgactgagatgaga 79
|||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 134365 gttcggtcgtgcaagtgaaaggaaattatgatgatatatgatggactgactgagatgaga 134424
Query: 80 aaagctggtatgaactcaacctctcttgtttttgtaaatatgattagttcatcgttcctg 139
||||||||||||||||| |||||| ||||||||||||||||||| ||| | |||||| ||
Sbjct: 134425 aaagctggtatgaactcgacctcttttgtttttgtaaatatgatgagtccctcgttcttg 134484
Query: 140 attcatcctattatgaaagaaacatatttgcaatgacaattagagattatagttgcttac 199
||||| | ||||||| || |||||| ||||||||||||||||||||| || |||||||
Sbjct: 134485 attcagcttattatg-aataaacatgtttgcaatgacaattagagatcatggttgcttgt 134543
Query: 200 gccatgcttaattagctaggagcttataatggtttaccttgcgtgccaacatgatattaa 259
||||||||| |||||||| ||| |||||||| ||||||||| ||||||||||| |||| |
Sbjct: 134544 gccatgcttgattagctatgag-ttataatgatttaccttgtgtgccaacatgctattga 134602
Query: 260 aatggttgtgatgtggtatg 279
||| || ||||||||||||
Sbjct: 134603 gatgattatgatgtggtatg 134622
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
sequence
Length = 113510
Score = 188 bits (95), Expect = 2e-45
Identities = 223/263 (84%), Gaps = 2/263 (0%)
Strand = Plus / Minus
Query: 19 tgttcagtcgtgcaggtgaaaggcaattatgacaatatatgatggactgactgagatg-a 77
||||| || ||||| ||| |||||||| ||||| |||| ||||| | |||| ||| || |
Sbjct: 87932 tgttcggttgtgcaagtggaaggcaataatgacgatatttgatgaagtgacggaggtgga 87873
Query: 78 gaaaagctggtatgaactcaacctctcttgtttttgtaaatatgattagttcatcgttcc 137
|||||||||||| ||||||||||| | |||||||||||||||||||||| ||||| |||
Sbjct: 87872 gaaaagctggtacgaactcaacctattttgtttttgtaaatatgattagctcatcattct 87813
Query: 138 tgattcatcctattatgaaagaaacatatttgcaatgacaattagagattatagttgctt 197
||||| | ||||| | ||||| |||||||| ||||||||||||||||||| |||
Sbjct: 87812 caattcagctcgttatggattgaacatgtttgcaataacaattagagattatagttactt 87753
Query: 198 acgccatgcttaattagctaggagcttataatggtttaccttgcgtgccaacatg-atat 256
| |||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||
Sbjct: 87752 atgccatgcttaattagctaggagtgaataatggtttgtcttgagtgccaacatgcatat 87693
Query: 257 taaaatggttgtgatgtggtatg 279
||||||||||||||||| |||||
Sbjct: 87692 taaaatggttgtgatgtagtatg 87670
>emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 protein
Length = 2579
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtgttca 24
||||||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggtgttca 25
>dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in placental villi, clone SMAP27
Length = 106
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtgt 21
|||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggtgt 22
>dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in placental villi, clone SMAP26
Length = 190
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtgt 21
|||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggtgt 22
>gb|AE006102.1|AE006102 Pasteurella multocida PM70 section 69 of 204 of the complete genome
Length = 12600
Score = 40.1 bits (20), Expect = 1.2
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 250 atgatattaaaatggttgtgatgt 273
|||||| |||||||||||||||||
Sbjct: 12108 atgataataaaatggttgtgatgt 12085
>gb|AF274869.1|AF274869 Pasteurella multocida
Length = 2380
Score = 40.1 bits (20), Expect = 1.2
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 250 atgatattaaaatggttgtgatgt 273
|||||| |||||||||||||||||
Sbjct: 331 atgataataaaatggttgtgatgt 354
>gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33
Length = 985
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtg 20
||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggtg 21
>emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04 gene for putative capsule
polysaccharide export protein precursor, contig region
pSL001
Length = 500
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtg 20
||||||||||||||||||||
Sbjct: 21 gcgtggtcgcggccgaggtg 40
>dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in placental villi, clone SMAP77
Length = 171
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtg 20
||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggtg 21
>dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in placental villi, clone SMAP41
Length = 103
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtg 20
||||||||||||||||||||
Sbjct: 102 gcgtggtcgcggccgaggtg 83
>gb|AC079310.20| Homo sapiens 12 BAC RP11-850F7 (Roswell Park Cancer Institute Human BAC
Library) complete sequence
Length = 180971
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 actgagatgagaaaagctg 86
|||||||||||||||||||
Sbjct: 151445 actgagatgagaaaagctg 151463
>gb|AE010826.1| Methanosarcina acetivorans str. C2A, section 171 of 534 of the complete
genome
Length = 11288
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 150 ttatgaaagaaacatattt 168
|||||||||||||||||||
Sbjct: 10369 ttatgaaagaaacatattt 10351
>gb|AC104694.3| Homo sapiens BAC clone RP11-337M10 from 2, complete sequence
Length = 55177
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 68 actgagatgagaaaagctg 86
|||||||||||||||||||
Sbjct: 19332 actgagatgagaaaagctg 19314
>gb|AC096951.2| Homo sapiens chromosome 1 clone RP4-739M21, complete sequence
Length = 102599
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 156 aagaaacatatttgcaatg 174
|||||||||||||||||||
Sbjct: 49082 aagaaacatatttgcaatg 49064
>gb|AC012186.6| Homo sapiens chromosome 16 clone RP11-93O14, complete sequence
Length = 162073
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 130 atcgttcctgattcatcct 148
|||||||||||||||||||
Sbjct: 121387 atcgttcctgattcatcct 121369
>gb|AE000665.1|MMAE000665 Mus musculus chromosome 6
Length = 199101
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 133 gttcctgattcatcctatt 151
|||||||||||||||||||
Sbjct: 72793 gttcctgattcatcctatt 72811
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 864 gcgtggtcgcggccgaggt 846
>gb|AC010276.6|AC010276 Homo sapiens chromosome 5 clone CTC-504A5, complete sequence
Length = 207842
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 247 aacatgatattaaaatggt 265
|||||||||||||||||||
Sbjct: 88515 aacatgatattaaaatggt 88533
>gb|AC007190.4|AC007190 Arabidopsis thaliana chromosome 1, complete sequence
Length = 86801
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 255 attaaaatggttgtgatgt 273
|||||||||||||||||||
Sbjct: 40156 attaaaatggttgtgatgt 40174
>emb|AL691454.14| Mouse DNA sequence from clone RP23-423P8 on chromosome 4, complete
sequence [Mus musculus]
Length = 204442
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 ttagagattatagttgctt 197
|||||||||||||||||||
Sbjct: 197432 ttagagattatagttgctt 197414
>emb|AL355306.10|AL355306 Human DNA sequence from clone RP5-947P14 on chromosome 1p13.3-21.3,
complete sequence [Homo sapiens]
Length = 107060
Score = 38.2 bits (19), Expect = 4.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 161 acatatttgcaatgacaattaga 183
||||||||| |||||||||||||
Sbjct: 23331 acatatttgaaatgacaattaga 23309
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 547 gcgtggtcgcggccgaggt 529
>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 171699
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 175 acaattagagattatagtt 193
|||||||||||||||||||
Sbjct: 166507 acaattagagattatagtt 166525
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 529 gcgtggtcgcggccgaggt 511
>emb|AL161612.13|AL161612 Human DNA sequence from clone RP11-196P2 on chromosome 13, complete
sequence [Homo sapiens]
Length = 160145
Score = 38.2 bits (19), Expect = 4.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 101 tctcttgtttttgtaaatatgat 123
||||||||||||||||| |||||
Sbjct: 109939 tctcttgtttttgtaaagatgat 109961
>gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA sequence
Length = 157
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 153 gcgtggtcgcggccgaggt 135
>emb|AL442183.4|CNS07ECU Human chromosome 14 DNA sequence BAC R-477N13 of library RPCI-11 from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 173260
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 175 acaattagagattatagtt 193
|||||||||||||||||||
Sbjct: 40795 acaattagagattatagtt 40813
>gb|AF107342.1|AF107342 Mus musculus chromosome 6 clone cosmid 82C strain Balb/c
Length = 42794
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 133 gttcctgattcatcctatt 151
|||||||||||||||||||
Sbjct: 4025 gttcctgattcatcctatt 4043
>emb|AL353684.8|AL353684 Human DNA sequence from clone RP11-275A14 on chromosome 9, complete
sequence [Homo sapiens]
Length = 110462
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 103 tcttgtttttgtaaatatg 121
|||||||||||||||||||
Sbjct: 14390 tcttgtttttgtaaatatg 14408
>emb|AL137182.9|AL137182 Human DNA sequence from clone RP1-257A15 on chromosome 6. Contains
ESTs, STSs, GSSs and a CpG island. Contains a putative
novel gene and a novel gene, complete sequence [Homo
sapiens]
Length = 120988
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 160 aacatatttgcaatgacaa 178
|||||||||||||||||||
Sbjct: 43568 aacatatttgcaatgacaa 43586
>emb|AL445604.9|AL445604 Human DNA sequence from clone RP11-661D17 on chromosome 13, complete
sequence [Homo sapiens]
Length = 174615
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 64 actgactgagatgagaaaa 82
|||||||||||||||||||
Sbjct: 143562 actgactgagatgagaaaa 143544
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 57 gcgtggtcgcggccgaggt 75
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 20 gcgtggtcgcggccgaggt 38
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 32 gcgtggtcgcggccgaggt 50
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 421 gcgtggtcgcggccgaggt 403
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 702 gcgtggtcgcggccgaggt 684
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 447 gcgtggtcgcggccgaggt 429
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 302 gcgtggtcgcggccgaggt 284
>emb|AL136234.12|AL136234 Human DNA sequence from clone RP5-933B4 on chromosome 1p22.3-31.1,
complete sequence [Homo sapiens]
Length = 119481
Score = 38.2 bits (19), Expect = 4.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 92 aactcaacctctcttgtttttgt 114
|||||||||||||| ||||||||
Sbjct: 74585 aactcaacctctctggtttttgt 74563
>emb|AL136374.4|AL136374 Human DNA sequence from clone RP1-244G5 on chromosome 1q24.3-25.3,
complete sequence [Homo sapiens]
Length = 119853
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 260 aatggttgtgatgtggtat 278
|||||||||||||||||||
Sbjct: 61080 aatggttgtgatgtggtat 61098
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 3 gcgtggtcgcggccgaggt 21
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 425 gcgtggtcgcggccgaggt 407
>emb|AL035409.15|HS564M11 Human DNA sequence from clone RP4-564M11 on chromosome 1p31.1 Contains 3'
end of PIGK (phosphatidylinositol glycan, class K) gene, a
novel mRNA, part of a gene similar to sialyltranferase,
ESTs, CA repeat, STSs and GSSs, complete sequence [Homo
sapiens]
Length = 138783
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 156 aagaaacatatttgcaatg 174
|||||||||||||||||||
Sbjct: 136870 aagaaacatatttgcaatg 136888
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in placental villi, clone SMAP52
Length = 1044
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in placental villi, clone SMAP47
Length = 417
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 55 gcgtggtcgcggccgaggt 37
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 38.2 bits (19), Expect = 4.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 332 gcgtggtcgcggccgaggt 314
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 958,922
Number of Sequences: 1217082
Number of extensions: 958922
Number of successful extensions: 20532
Number of sequences better than 10.0: 49
length of query: 279
length of database: 5,500,847,177
effective HSP length: 20
effective length of query: 259
effective length of database: 5,476,505,537
effective search space: 1418414934083
effective search space used: 1418414934083
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)