The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.

BLASTX 2.2.3 [Apr-24-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Fgr-S3_1_A23_T7.seq Fgr-S3_1_A23_T7 LENGTH:151bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_A23 ; CLONELIB: n/a 
         (151 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
           922,381 sequences; 289,601,141 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_282606.1|  (NC_002163) putative flagellar hook-associ...    31   3.8  

>ref|NP_282606.1| (NC_002163) putative flagellar hook-associated protein
           [Campylobacter jejuni]
 pir||A81293 probable flagellar hook-associated protein Cj1466 [imported] -
           Campylobacter jejuni (strain NCTC 11168)
 emb|CAB73889.1| (AL139078) putative flagellar hook-associated protein
           [Campylobacter jejuni]
          Length = 608

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/42 (40%), Positives = 22/42 (51%), Gaps = 7/42 (16%)
 Frame = +1

Query: 22  GILDELRHINKRW-------KRNQTRIALVTASEAATAQI*N 126
           GIL +L + NK W         N T+IALV AS+  T  + N
Sbjct: 108 GILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNN 149



  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  May 11, 2002  4:54 AM
  Number of letters in database: 289,601,141
  Number of sequences in database:  922,381
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.267   0.0410 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,121,349
Number of Sequences: 922381
Number of extensions: 1096122
Number of successful extensions: 2243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2243
length of database: 289,601,141
effective HSP length: 25
effective length of database: 266,541,616
effective search space used: 6396998784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)