The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_B05_T7.seq Fgr-S3_1_B05_T7 LENGTH:227bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_B05 ; CLONELIB: n/a
(227 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 54 6e-05
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 44 0.060
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 44 0.060
emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosom... 44 0.060
emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome... 44 0.060
gb|AY050779.1| Arabidopsis thaliana putative alliin lyase (... 42 0.24
gb|AY091455.1| Arabidopsis thaliana putative alliin lyase (... 42 0.24
ref|NM_118600.1| Arabidopsis thaliana chromosome 4 clone CH... 42 0.24
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 42 0.24
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 42 0.24
emb|AL356672.9|AL356672 Human DNA sequence from clone RP11-... 42 0.24
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 42 0.24
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 42 0.24
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 42 0.24
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 42 0.24
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 42 0.24
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 42 0.24
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 42 0.24
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 42 0.24
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 42 0.24
gb|AE010643.1| Fusobacterium nucleatum subsp. nucleatum ATC... 40 0.94
gb|AC080132.6| Homo sapiens BAC clone RP11-166B20 from 4, c... 40 0.94
ref|NM_117271.1| Arabidopsis thaliana chromosome 4 clone CH... 40 0.94
gb|AC016572.6| Homo sapiens chromosome 5 clone CTB-22L19, c... 40 0.94
gb|AC092241.1|AC092241 Drosophila melanogaster, chromosome ... 40 0.94
gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome II... 40 0.94
gb|AE003631.2|AE003631 Drosophila melanogaster genomic scaf... 40 0.94
emb|AL158839.11|AL158839 Human DNA sequence from clone RP11... 40 0.94
gb|AC006073.1|AC006073 Drosophila melanogaster, chromosome ... 40 0.94
gb|AC003682.1|AC003682 Homo sapiens chromosome 19, overlapp... 40 0.94
gb|AC002366.1|AC002366 Homo sapiens chromosome X clone CT-2... 40 0.94
emb|Z64354.1|SPAC23D3 S.pombe chromosome I cosmid c23D3 40 0.94
emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosom... 40 0.94
emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome... 40 0.94
emb|AL096772.5|HSJ365O12 Human DNA sequence from clone RP3-... 40 0.94
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 40 0.94
gb|AC011439.12| Homo sapiens chromosome 10 clone RP11-443A1... 38 3.7
gb|AC104447.2| Homo sapiens chromosome 3 clone RP11-447D11,... 38 3.7
gb|AC087239.18| Homo sapiens 12p BAC RP11-707G18 (Roswell P... 38 3.7
gb|AC097479.3| Homo sapiens BAC clone RP11-115G5 from 4, co... 38 3.7
gb|AC109466.2| Homo sapiens chromosome 5 clone RP11-308N24,... 38 3.7
gb|AC034150.6| Homo sapiens BAC clone RP11-167N19 from 4, c... 38 3.7
gb|AC012497.8| Homo sapiens BAC clone RP11-349I7 from 2, co... 38 3.7
gb|AC093089.1| Oryza sativa chromosome 5 clone OJ1729E02, c... 38 3.7
gb|AC007991.7|AC007991 Homo sapiens, clone RP11-44K6, compl... 38 3.7
gb|AC009218.7|AC009218 Drosophila melanogaster, chromosome ... 38 3.7
gb|AC007837.4|AC007837 Drosophila melanogaster, chromosome ... 38 3.7
gb|AC084482.1|CBRG03B17 Caenorhabditis briggsae cosmid G03B... 38 3.7
gb|AE003791.2|AE003791 Drosophila melanogaster genomic scaf... 38 3.7
gb|AF305872.1|AF305872 Homo sapiens thyroglobulin gene, par... 38 3.7
gb|AC007037.4|AC007037 Homo sapiens BAC clone RP11-119H15 f... 38 3.7
emb|Z98744.2|HS193B12 Human DNA sequence from clone RP1-193... 38 3.7
gb|AC004013.1|AC004013 Homo sapiens chromosome 7 clone GS1-... 38 3.7
emb|AL009179.1|HS97D16 Human DNA sequence from clone RP1-97... 38 3.7
gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33 38 3.7
emb|AL445670.19|AL445670 Human DNA sequence from clone RP11... 38 3.7
gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA seq... 38 3.7
emb|AL352992.1|LMFL5213T Leishmania major Friedlin cosmid L... 38 3.7
emb|AL136219.17|AL136219 Human DNA sequence from clone RP11... 38 3.7
emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04... 38 3.7
emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 pr... 38 3.7
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 38 3.7
emb|Z95152.1|HS179N16 Homo sapiens DNA sequence from PAC 17... 38 3.7
dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in... 38 3.7
dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in... 38 3.7
dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in... 38 3.7
dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in... 38 3.7
dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in... 38 3.7
dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in... 38 3.7
emb|AJ010770.1|HSA010770 Homo sapiens hyperion gene, exons ... 38 3.7
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 54.0 bits (27), Expect = 6e-05
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtactactac 27
|||||||||||||||||||||||||||
Sbjct: 20 gcgtggtcgcggccgaggtactactac 46
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 44.1 bits (22), Expect = 0.060
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtact 22
||||||||||||||||||||||
Sbjct: 57 gcgtggtcgcggccgaggtact 78
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 44.1 bits (22), Expect = 0.060
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtact 22
||||||||||||||||||||||
Sbjct: 32 gcgtggtcgcggccgaggtact 53
>emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 56
Length = 196247
Score = 44.1 bits (22), Expect = 0.060
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 aaaacaaacaaacagttattaa 169
||||||||||||||||||||||
Sbjct: 179339 aaaacaaacaaacagttattaa 179360
>emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSA project)
Length = 82891
Score = 44.1 bits (22), Expect = 0.060
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 aaaacaaacaaacagttattaa 169
||||||||||||||||||||||
Sbjct: 21997 aaaacaaacaaacagttattaa 22018
>gb|AY050779.1| Arabidopsis thaliana putative alliin lyase (At4g24670) mRNA, complete
cds
Length = 1496
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 207 catgcaaatgctggttgtggc 227
|||||||||||||||||||||
Sbjct: 1187 catgcaaatgctggttgtggc 1167
>gb|AY091455.1| Arabidopsis thaliana putative alliin lyase (At4g24670) mRNA, complete
cds
Length = 1354
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 207 catgcaaatgctggttgtggc 227
|||||||||||||||||||||
Sbjct: 1136 catgcaaatgctggttgtggc 1116
>ref|NM_118600.1| Arabidopsis thaliana chromosome 4 clone CHR4v12152001
Length = 1480
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 207 catgcaaatgctggttgtggc 227
|||||||||||||||||||||
Sbjct: 1187 catgcaaatgctggttgtggc 1167
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 864 gcgtggtcgcggccgaggtac 844
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 547 gcgtggtcgcggccgaggtac 527
>emb|AL356672.9|AL356672 Human DNA sequence from clone RP11-452D24 on chromosome 6, complete
sequence [Homo sapiens]
Length = 166517
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 tagtagcaaaacaaacaaaca 161
|||||||||||||||||||||
Sbjct: 108064 tagtagcaaaacaaacaaaca 108084
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 529 gcgtggtcgcggccgaggtac 509
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 421 gcgtggtcgcggccgaggtac 401
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 702 gcgtggtcgcggccgaggtac 682
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 447 gcgtggtcgcggccgaggtac 427
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 302 gcgtggtcgcggccgaggtac 282
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 3 gcgtggtcgcggccgaggtac 23
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 425 gcgtggtcgcggccgaggtac 405
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggtac 22
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggtac 21
|||||||||||||||||||||
Sbjct: 332 gcgtggtcgcggccgaggtac 312
>gb|AE010643.1| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 185 of
197 of the complete genome
Length = 10411
Score = 40.1 bits (20), Expect = 0.94
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 155 acaaacagttattaaagattcaag 178
|||||| |||||||||||||||||
Sbjct: 235 acaaactgttattaaagattcaag 212
>gb|AC080132.6| Homo sapiens BAC clone RP11-166B20 from 4, complete sequence
Length = 114320
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 agtagcaaaacaaacaaaca 161
||||||||||||||||||||
Sbjct: 104424 agtagcaaaacaaacaaaca 104405
>ref|NM_117271.1| Arabidopsis thaliana chromosome 4 clone CHR4v12152001
Length = 3660
Score = 40.1 bits (20), Expect = 0.94
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 55 tggcatgaagaacataataacaga 78
|||||||||||||||| |||||||
Sbjct: 2547 tggcatgaagaacatactaacaga 2524
>gb|AC016572.6| Homo sapiens chromosome 5 clone CTB-22L19, complete sequence
Length = 143687
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 142 agtagcaaaacaaacaaaca 161
||||||||||||||||||||
Sbjct: 141998 agtagcaaaacaaacaaaca 141979
>gb|AC092241.1|AC092241 Drosophila melanogaster, chromosome 2L, region 32F-33A, BAC clone
BACR09F02, complete sequence
Length = 174652
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 142 agtagcaaaacaaacaaaca 161
||||||||||||||||||||
Sbjct: 98114 agtagcaaaacaaacaaaca 98133
>gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III clone T12H1 map mi172, complete
sequence
Length = 140064
Score = 40.1 bits (20), Expect = 0.94
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 60 tgaagaacataataacagagtgca 83
||||||||||||||||| ||||||
Sbjct: 105500 tgaagaacataataacacagtgca 105477
>gb|AE003631.2|AE003631 Drosophila melanogaster genomic scaffold 142000013386055 section 24 of
63, complete sequence
Length = 261383
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 142 agtagcaaaacaaacaaaca 161
||||||||||||||||||||
Sbjct: 147766 agtagcaaaacaaacaaaca 147785
>emb|AL158839.11|AL158839 Human DNA sequence from clone RP11-180O5 on chromosome 1, complete
sequence [Homo sapiens]
Length = 70110
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 aaacaaacaaacagttatta 168
||||||||||||||||||||
Sbjct: 10419 aaacaaacaaacagttatta 10438
>gb|AC006073.1|AC006073 Drosophila melanogaster, chromosome 2L, region 32D3-32E2, P1 clones
DS05055 and DS02287, complete sequence
Length = 94440
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 142 agtagcaaaacaaacaaaca 161
||||||||||||||||||||
Sbjct: 23131 agtagcaaaacaaacaaaca 23150
>gb|AC003682.1|AC003682 Homo sapiens chromosome 19, overlapping cosmids F18547, F11133, R27945,
R28830 and R32804, complete sequence
Length = 153875
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 aaaacaaacaaacagttatt 167
||||||||||||||||||||
Sbjct: 53359 aaaacaaacaaacagttatt 53378
>gb|AC002366.1|AC002366 Homo sapiens chromosome X clone CT-285I15, RPTCI1-27C22, U35B5 map Xp22,
complete sequence
Length = 259202
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tggcatgaagaacataataa 74
||||||||||||||||||||
Sbjct: 145814 tggcatgaagaacataataa 145833
>emb|Z64354.1|SPAC23D3 S.pombe chromosome I cosmid c23D3
Length = 42037
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 attaaagtaatattggcatg 61
||||||||||||||||||||
Sbjct: 20459 attaaagtaatattggcatg 20478
>emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33
Length = 190026
Score = 40.1 bits (20), Expect = 0.94
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 tggcatgaagaacataataacaga 78
|||||||||||||||| |||||||
Sbjct: 55654 tggcatgaagaacatactaacaga 55677
>emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA project)
Length = 107600
Score = 40.1 bits (20), Expect = 0.94
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 tggcatgaagaacataataacaga 78
|||||||||||||||| |||||||
Sbjct: 31824 tggcatgaagaacatactaacaga 31847
>emb|AL096772.5|HSJ365O12 Human DNA sequence from clone RP3-365O12 on chromosome 6p11.2-12.3
Contains the gene for KIAA0758 protein, ESTs, STSs and
GSSs, complete sequence [Homo sapiens]
Length = 117636
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 140 gtagtagcaaaacaaacaaa 159
||||||||||||||||||||
Sbjct: 12147 gtagtagcaaaacaaacaaa 12128
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 40.1 bits (20), Expect = 0.94
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggta 21
>gb|AC011439.12| Homo sapiens chromosome 10 clone RP11-443A13, complete sequence
Length = 180609
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40 gtattaaagtaatattggc 58
|||||||||||||||||||
Sbjct: 38889 gtattaaagtaatattggc 38907
>gb|AC104447.2| Homo sapiens chromosome 3 clone RP11-447D11, complete sequence
Length = 202544
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 143 gtagcaaaacaaacaaaca 161
|||||||||||||||||||
Sbjct: 53187 gtagcaaaacaaacaaaca 53169
>gb|AC087239.18| Homo sapiens 12p BAC RP11-707G18 (Roswell Park Cancer Institute Human BAC
Library) complete sequence
Length = 178006
Score = 38.2 bits (19), Expect = 3.7
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 139 cgtagtagcaaaacaaacaaaca 161
|||| ||||||||||||||||||
Sbjct: 132733 cgtactagcaaaacaaacaaaca 132711
>gb|AC097479.3| Homo sapiens BAC clone RP11-115G5 from 4, complete sequence
Length = 137848
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 143 gtagcaaaacaaacaaaca 161
|||||||||||||||||||
Sbjct: 80996 gtagcaaaacaaacaaaca 80978
>gb|AC109466.2| Homo sapiens chromosome 5 clone RP11-308N24, complete sequence
Length = 153815
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 143 gtagcaaaacaaacaaaca 161
|||||||||||||||||||
Sbjct: 140987 gtagcaaaacaaacaaaca 141005
>gb|AC034150.6| Homo sapiens BAC clone RP11-167N19 from 4, complete sequence
Length = 150167
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 152 caaacaaacagttattaaa 170
|||||||||||||||||||
Sbjct: 115382 caaacaaacagttattaaa 115400
>gb|AC012497.8| Homo sapiens BAC clone RP11-349I7 from 2, complete sequence
Length = 212104
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 156 caaacagttattaaagatt 174
|||||||||||||||||||
Sbjct: 81008 caaacagttattaaagatt 81026
>gb|AC093089.1| Oryza sativa chromosome 5 clone OJ1729E02, complete sequence
Length = 90509
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 76 agagtgcaagaaaacatgg 94
|||||||||||||||||||
Sbjct: 8053 agagtgcaagaaaacatgg 8035
>gb|AC007991.7|AC007991 Homo sapiens, clone RP11-44K6, complete sequence
Length = 149008
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 144 tagcaaaacaaacaaacag 162
|||||||||||||||||||
Sbjct: 140734 tagcaaaacaaacaaacag 140716
>gb|AC009218.7|AC009218 Drosophila melanogaster, chromosome 2R, region 57B-57B, BAC clone
BACR33D17, complete sequence
Length = 156753
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 27 ccaaacattgccagtatta 45
|||||||||||||||||||
Sbjct: 140474 ccaaacattgccagtatta 140456
>gb|AC007837.4|AC007837 Drosophila melanogaster, chromosome 2R, region 57B2-B3, BAC clone
BACR04I07, complete sequence
Length = 123647
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 27 ccaaacattgccagtatta 45
|||||||||||||||||||
Sbjct: 107368 ccaaacattgccagtatta 107350
>gb|AC084482.1|CBRG03B17 Caenorhabditis briggsae cosmid G03B17, complete sequence
Length = 25417
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 172 attcaagttgaaaaccaat 190
|||||||||||||||||||
Sbjct: 1008 attcaagttgaaaaccaat 990
>gb|AE003791.2|AE003791 Drosophila melanogaster genomic scaffold 142000013386047 section 52 of
52, complete sequence
Length = 260686
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 27 ccaaacattgccagtatta 45
|||||||||||||||||||
Sbjct: 177743 ccaaacattgccagtatta 177725
>gb|AF305872.1|AF305872 Homo sapiens thyroglobulin gene, partial cds; and Src-like adapter
protein gene, complete cds, complete sequence
Length = 134138
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 143 gtagcaaaacaaacaaaca 161
|||||||||||||||||||
Sbjct: 56120 gtagcaaaacaaacaaaca 56102
>gb|AC007037.4|AC007037 Homo sapiens BAC clone RP11-119H15 from 2, complete sequence
Length = 168084
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40 gtattaaagtaatattggc 58
|||||||||||||||||||
Sbjct: 134957 gtattaaagtaatattggc 134975
>emb|Z98744.2|HS193B12 Human DNA sequence from clone RP1-193B12 on chromosome 6p21.3-22.3
Contains the H2AFD, H2BFD, H2AFI, H1F5, H3FF, H4FK, H3FJ,
H2AFN, and H2BFN histone genes, the OR2B2 gene for
olfactory receptor 2B2, histone H2B family member I
pseudogene H2BFIP, a hyp>
Length = 100374
Score = 38.2 bits (19), Expect = 3.7
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 157 aaacagttattaaagattcaagt 179
||||| |||||||||||||||||
Sbjct: 96946 aaacacttattaaagattcaagt 96924
>gb|AC004013.1|AC004013 Homo sapiens chromosome 7 clone GS1-541B18 map 7q21, complete sequence
Length = 59105
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 143 gtagcaaaacaaacaaaca 161
|||||||||||||||||||
Sbjct: 45926 gtagcaaaacaaacaaaca 45908
>emb|AL009179.1|HS97D16 Human DNA sequence from clone RP1-97D16 on chromosome 6p21.3-22.2.
Contains a novel pseudogene, a 60S Ribosomal protein L30
(RPL30) pseudogene, H4 histone family member F pseudogene
H4FFP and histone genes H2BFC, H2AFC, H3FK. Contains ESTs,
STSs, GSSs >
Length = 139904
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 142 agtagcaaaacaaacaaac 160
|||||||||||||||||||
Sbjct: 76742 agtagcaaaacaaacaaac 76724
>gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33
Length = 985
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>emb|AL445670.19|AL445670 Human DNA sequence from clone RP11-520B13 on chromosome 9, complete
sequence [Homo sapiens]
Length = 168026
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 144 tagcaaaacaaacaaacag 162
|||||||||||||||||||
Sbjct: 142178 tagcaaaacaaacaaacag 142196
>gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA sequence
Length = 157
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 153 gcgtggtcgcggccgaggt 135
>emb|AL352992.1|LMFL5213T Leishmania major Friedlin cosmid L5213T
Length = 29074
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 146 gcaaaacaaacaaacagtt 164
|||||||||||||||||||
Sbjct: 2575 gcaaaacaaacaaacagtt 2593
>emb|AL136219.17|AL136219 Human DNA sequence from clone RP11-149B7 on chromosome 13, complete
sequence [Homo sapiens]
Length = 167830
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 143 gtagcaaaacaaacaaaca 161
|||||||||||||||||||
Sbjct: 121475 gtagcaaaacaaacaaaca 121457
>emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04 gene for putative capsule
polysaccharide export protein precursor, contig region
pSL001
Length = 500
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 21 gcgtggtcgcggccgaggt 39
>emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 protein
Length = 2579
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0424A08
Length = 151294
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 76 agagtgcaagaaaacatgg 94
|||||||||||||||||||
Sbjct: 39648 agagtgcaagaaaacatgg 39630
>emb|Z95152.1|HS179N16 Homo sapiens DNA sequence from PAC 179N16 on chromosome 6p21.1-21.33.
Contains the SAPK4 (MAPK p38delta) gene, and the
alternatively spliced SAPK2 gene coding for CSaids binding
protein CSBP2 and a MAPK p38beta LIKE protein. Contains
ESTs, STSs and two>
Length = 172048
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 206 tcatgcaaatgctggttgt 224
|||||||||||||||||||
Sbjct: 83584 tcatgcaaatgctggttgt 83602
>dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in placental villi, clone SMAP27
Length = 106
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in placental villi, clone SMAP26
Length = 190
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in placental villi, clone SMAP77
Length = 171
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in placental villi, clone SMAP52
Length = 1044
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in placental villi, clone SMAP47
Length = 417
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 55 gcgtggtcgcggccgaggt 37
>dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in placental villi, clone SMAP41
Length = 103
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 102 gcgtggtcgcggccgaggt 84
>emb|AJ010770.1|HSA010770 Homo sapiens hyperion gene, exons 1-50
Length = 170008
Score = 38.2 bits (19), Expect = 3.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 143 gtagcaaaacaaacaaaca 161
|||||||||||||||||||
Sbjct: 154795 gtagcaaaacaaacaaaca 154777
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,057,041
Number of Sequences: 1217082
Number of extensions: 1057041
Number of successful extensions: 78372
Number of sequences better than 10.0: 70
length of query: 227
length of database: 5,500,847,177
effective HSP length: 20
effective length of query: 207
effective length of database: 5,476,505,537
effective search space: 1133636646159
effective search space used: 1133636646159
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)