The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
TBLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_B05_T7.seq Fgr-S3_1_B05_T7 LENGTH:227bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_B05 ; CLONELIB: n/a
(227 letters)
Database: Database of GenBank+EMBL+DDBJ sequences from EST Divisions
2,802,641 sequences; 1,073,741,643 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI585539.1|BI585539 RH25144.5prime RH Drosophila melanog... 29 0.033
gb|AA540693.1|AA540693 LD20467.5prime LD Drosophila melanog... 28 0.070
gb|BG420007.1|BG420007 602453683F1 NIH_MGC_14 Homo sapiens ... 29 0.20
gb|AW681586.1|AW681586 EST00304 E8.5 mouse craniofacial sub... 31 0.21
gb|BF126610.1|BF126610 601650874F1 NIH_MGC_76 Homo sapiens ... 29 0.26
gb|BF577178.1|BF577178 602135472F1 NIH_MGC_81 Homo sapiens ... 37 0.31
dbj|BB452926.2|BB452926 BB452926 RIKEN full-length enriched... 27 0.45
emb|AL725802.1|AL725802 AL725802 Danio rerio embryonic inne... 21 0.62
dbj|AV805669.1|AV805669 AV805669 RAFL9 Arabidopsis thaliana... 32 0.72
dbj|AV790669.1|AV790669 AV790669 RAFL6 Arabidopsis thaliana... 32 0.72
emb|AL728093.1|AL728093 AL728093 Danio rerio embryonic inne... 25 0.82
gb|BM356662.1|BM356662 12IV-G9 Triphysaria versicolor root-... 27 1.0
gb|BF580014.1|BF580014 602095210F1 NCI_CGAP_Co24 Mus muscul... 35 1.1
gb|AA981375.1|AA981375 vx56c12.r1 Stratagene mouse macropha... 23 1.2
gb|BM571400.1|BM571400 fw75g10.y1 Gong zebrafish testis Dan... 28 1.2
gb|BI880016.1|BI880016 fm68f03.x1 Zebrafish adult retina cD... 28 1.3
gb|BG296407.1|BG296407 602394287F1 NIH_MGC_94 Mus musculus ... 32 1.4
gb|BM778605.1|BM778605 fx52c02.y1 Zebrafish SJD 5 day embry... 28 1.4
gb|BF337280.1|BF337280 602034639F1 NCI_CGAP_Brn64 Homo sapi... 25 1.5
gb|BF974300.1|BF974300 602243956F1 NIH_MGC_48 Homo sapiens ... 35 1.5
dbj|BJ071208.1|BJ071208 BJ071208 NIBB Mochii normalized Xen... 35 1.5
gb|BI493520.1|BI493520 df102b01.y1 Morton Fetal Cochlea Hom... 35 1.5
gb|BE205858.1|BE205858 bb47f01.x1 NIH_MGC_17 Homo sapiens c... 25 1.5
gb|AA526844.1|AA526844 ni92d10.s1 NCI_CGAP_Pr21 Homo sapien... 31 1.6
gb|BI198235.1|BI198235 602763347F1 NIH_MGC_19 Homo sapiens ... 28 1.7
gb|BG113080.1|BG113080 602283732F1 NIH_MGC_86 Homo sapiens ... 28 1.8
gb|BM357045.1|BM357045 16I-G4 Triphysaria versicolor root-t... 24 2.0
gb|BF243823.1|BF243823 601877588F1 NIH_MGC_55 Homo sapiens ... 35 2.1
gb|BE371876.1|BE371876 601217972F1 NCI_CGAP_Lu29 Mus muscul... 35 2.1
gb|BI085606.1|BI085606 602870148F1 NIH_MGC_98 Homo sapiens ... 29 2.3
gb|BI161215.1|BI161215 602865673F1 NIH_MGC_42 Homo sapiens ... 29 2.4
gb|BF573002.1|BF573002 602078814F2 NIH_MGC_62 Homo sapiens ... 24 2.5
gb|BG473414.1|BG473414 602516193F1 NIH_MGC_16 Homo sapiens ... 22 2.6
gb|BI628706.1|BI628706 RH57229.5prime RH Drosophila melanog... 28 2.6
gb|BE777572.1|BE777572 601348467F1 NIH_MGC_54 Homo sapiens ... 26 2.7
emb|AL715408.1|AL715408 AL715408 Danio rerio embryonic inne... 29 2.7
emb|AL722457.1|AL722457 AL722457 Danio rerio embryonic inne... 26 2.8
gb|AI771007.1|AI771007 SWAMCAC31C07SK Brugia malayi adult m... 29 2.8
dbj|AV311519.2|AV311519 AV311519 RIKEN full-length enriched... 34 2.9
gb|BG177765.1|BG177765 602314959F1 NIH_MGC_85 Homo sapiens ... 34 2.9
gb|BG393710.1|BG393710 602412139F1 NIH_MGC_92 Homo sapiens ... 34 2.9
emb|AL729224.1|AL729224 AL729224 Danio rerio embryonic inne... 23 2.9
gb|AA545888.1|AA545888 SWMFCA2438SK Brugia malayi microfila... 29 2.9
emb|AL727505.1|AL727505 AL727505 Danio rerio embryonic inne... 26 3.0
gb|AI473327.1|AI473327 th83e11.x1 Soares_NhHMPu_S1 Homo sap... 28 3.0
emb|AL723806.1|AL723806 AL723806 Danio rerio embryonic inne... 23 3.1
gb|BG477060.1|BG477060 602524414F1 NIH_MGC_20 Homo sapiens ... 23 3.4
gb|AI267462.1|AI267462 aq65b02.x1 Stanley Frontal SN pool 2... 23 3.5
gb|AI853470.1|AI853470 UI-M-BH0-ajy-g-08-0-UI.s1 NIH_BMAP_M... 25 3.6
gb|BF502069.2|BF502069 AT17687.5prime AT Drosophila melanog... 25 3.7
emb|AL728929.1|AL728929 AL728929 Danio rerio embryonic inne... 29 3.8
gb|AW056173.1|AW056173 660005B08.y1 660 - Mixed stages of a... 34 3.9
gb|BF337166.1|BF337166 602034745F1 NCI_CGAP_Brn64 Homo sapi... 34 3.9
dbj|AU039578.1|AU039578 AU039578 Dictyostelium discoideum S... 34 3.9
dbj|AU039972.1|AU039972 AU039972 Dictyostelium discoideum S... 34 3.9
gb|BI558727.1|BI558727 603241444F1 NCI_CGAP_Mam4 Mus muscul... 34 3.9
emb|AL731030.1|AL731030 AL731030 Danio rerio embryonic inne... 24 3.9
gb|AA630591.1|AA630591 ac11c01.s1 Stratagene HeLa cell s3 9... 28 4.3
gb|BG112403.1|BG112403 602281978F1 NIH_MGC_86 Homo sapiens ... 25 4.3
gb|AI267857.1|AI267857 aq49c08.x1 Stanley Frontal NB pool 2... 23 4.4
gb|BI767369.1|BI767369 603057510F1 NIH_MGC_122 Homo sapiens... 25 4.5
dbj|AU136203.1|AU136203 AU136203 PLACE1 Homo sapiens cDNA c... 27 4.6
gb|BI462948.1|BI462948 603204153F1 NIH_MGC_97 Homo sapiens ... 30 4.6
gb|AA063678.1|AA063678 T3365 MVAT4 bloodstream form of sero... 27 4.6
gb|BF435210.1|BF435210 nab36d05.x1 Soares_NSF_F8_9W_OT_PA_P... 28 4.8
emb|AL719018.1|AL719018 AL719018 Danio rerio embryonic inne... 22 4.8
dbj|BB488472.2|BB488472 BB488472 RIKEN full-length enriched... 25 5.0
gb|AA513357.1|AA513357 ne58h07.s1 NCI_CGAP_Co3 Homo sapiens... 28 5.2
gb|BI083709.1|BI083709 602874894F2 NCI_CGAP_Mam2 Mus muscul... 27 5.3
dbj|BB772028.1|BB772028 BB772028 RIKEN full-length enriched... 33 5.4
gb|BG331883.1|BG331883 602433031F1 NIH_MGC_18 Homo sapiens ... 33 5.4
gb|AW850488.1|AW850488 IL3-CT0219-280100-061-F12 CT0219 Hom... 33 5.4
gb|BI256265.1|BI256265 602975090F1 NIH_MGC_12 Homo sapiens ... 33 5.4
gb|BI786478.1|BI786478 sai49e10.y1 Gm-c1065 Glycine max cDN... 33 5.4
gb|BG352918.1|BG352918 sab93a09.y1 Gm-c1040 Glycine max cDN... 33 5.4
gb|BM177132.1|BM177132 saj77c01.y1 Gm-c1074 Glycine max cDN... 33 5.4
emb|AL576451.1|AL576451 AL576451 LTI_NFL006_PL2 Homo sapien... 33 5.4
dbj|AV655892.1|AV655892 AV655892 GLC Homo sapiens cDNA clon... 33 5.4
dbj|BB266133.1|BB266133 BB266133 RIKEN full-length enriched... 33 5.4
gb|H16637.1|H16637 ym26e06.r1 Soares infant brain 1NIB Homo... 33 5.4
gb|BE346748.1|BE346748 sp29g02.y1 Gm-c1042 Glycine max cDNA... 33 5.4
gb|BI048021.1|BI048021 PM2-ST0303-140301-009-e05 ST0303 Hom... 33 5.4
gb|BF034625.1|BF034625 601455056F1 NIH_MGC_66 Homo sapiens ... 29 5.4
gb|BE613718.1|BE613718 601504520F1 NIH_MGC_71 Homo sapiens ... 26 5.4
emb|AL723159.1|AL723159 AL723159 Danio rerio embryonic inne... 23 5.5
dbj|AU135153.1|AU135153 AU135153 PLACE1 Homo sapiens cDNA c... 27 5.5
gb|BG172311.1|BG172311 602333461F1 NCI_CGAP_Mam1 Mus muscul... 27 5.7
gb|BI604205.1|BI604205 603248553F1 NIH_MGC_96 Homo sapiens ... 27 5.8
gb|AI167410.1|AI167410 ox69g06.s1 Soares_NhHMPu_S1 Homo sap... 28 5.9
dbj|AU138770.1|AU138770 AU138770 PLACE1 Homo sapiens cDNA c... 27 5.9
gb|BG922890.1|BG922890 602817470F1 NCI_CGAP_Mam6 Mus muscul... 25 6.0
gb|BM974034.1|BM974034 UI-CF-EC1-abz-m-10-0-UI.s1 UI-CF-EC1... 27 6.0
gb|AW731657.1|AW731657 ba56e10.x1 NIH_MGC_10 Homo sapiens c... 28 6.1
gb|BM796145.1|BM796145 K-EST0078791 S22SNU16n1 Homo sapiens... 28 6.2
gb|AA947847.1|AA947847 ok21e12.s1 Soares_NSF_F8_9W_OT_PA_P_... 28 6.2
gb|AI373132.1|AI373132 qz98f06.x1 Soares_pregnant_uterus_Nb... 28 6.3
gb|AI377095.1|AI377095 tc16d09.x1 Soares_NhHMPu_S1 Homo sap... 28 6.4
gb|BI858314.1|BI858314 603384088F1 NIH_MGC_87 Homo sapiens ... 27 6.4
gb|BQ137247.1|BQ137247 NF106H07ST1F1063 Developing stem Med... 24 6.5
gb|BF183477.1|BF183477 601809949R1 NIH_MGC_18 Homo sapiens ... 30 6.5
gb|AI018614.1|AI018614 ou47f01.x1 NCI_CGAP_Br2 Homo sapiens... 28 6.5
gb|BG541470.1|BG541470 602570914F1 NIH_MGC_77 Homo sapiens ... 24 6.6
gb|BI176941.1|BI176941 EST517886 cSTE Solanum tuberosum cDN... 24 6.6
gb|AW664608.1|AW664608 hi15f05.x1 NCI_CGAP_GU1 Homo sapiens... 28 6.6
gb|AA505691.1|AA505691 nh94c10.s1 NCI_CGAP_Br2 Homo sapiens... 26 6.7
emb|AL724129.1|AL724129 AL724129 Danio rerio embryonic inne... 24 6.7
emb|AL730791.1|AL730791 AL730791 Danio rerio embryonic inne... 24 6.8
emb|AL724668.1|AL724668 AL724668 Danio rerio embryonic inne... 24 6.8
gb|AI804357.1|AI804357 tc56c12.x1 Soares_NhHMPu_S1 Homo sap... 28 6.8
gb|AW681946.1|AW681946 EST00664 E8.5 mouse craniofacial sub... 26 6.9
gb|BG725140.1|BG725140 EtESTed46h02.y1 Eimeria tenella S5-2... 26 7.1
gb|BE467561.1|BE467561 hz72d11.x1 NCI_CGAP_Lu24 Homo sapien... 28 7.2
gb|AA398731.1|AA398731 zt75e04.s1 Soares_testis_NHT Homo sa... 22 7.2
emb|AL712531.1|AL712531 DKFZp686K1889_r1 686 (synonym: hlcc... 33 7.4
gb|BG033685.1|BG033685 602301237F1 NIH_MGC_87 Homo sapiens ... 33 7.4
dbj|BJ218709.1|BJ218709 BJ218709 Y. Ogihara unpublished cDN... 33 7.4
dbj|BB536061.2|BB536061 BB536061 RIKEN full-length enriched... 33 7.4
gb|BG335671.1|BG335671 602404311F1 NIH_MGC_21 Homo sapiens ... 33 7.4
gb|AI158338.1|AI158338 ud27e03.r1 Soares_thymus_2NbMT Mus m... 33 7.4
gb|BE914045.1|BE914045 601665459F1 NCI_CGAP_Mam1 Mus muscul... 27 7.4
gb|AA731219.1|AA731219 nw69c12.s1 NCI_CGAP_GCB1 Homo sapien... 29 7.5
gb|AI791752.1|AI791752 oq54f01.y5 NCI_CGAP_Kid5 Homo sapien... 24 7.6
gb|AW122256.1|AW122256 UI-M-BH2.2-aov-g-07-0-UI.s1 NIH_BMAP... 22 7.6
dbj|BB289233.1|BB289233 BB289233 RIKEN full-length enriched... 28 7.7
gb|AI267418.1|AI267418 aq64g03.x1 Stanley Frontal SN pool 2... 26 7.7
emb|AL723637.1|AL723637 AL723637 Danio rerio embryonic inne... 30 7.8
gb|BM357207.1|BM357207 13II-H9 Triphysaria versicolor root-... 21 7.8
gb|AW482828.1|AW482828 47693 MARC 1PIG Sus scrofa cDNA 3'. 28 8.1
emb|AL717376.1|AL717376 AL717376 Danio rerio embryonic inne... 29 8.3
emb|AL717318.1|AL717318 AL717318 Danio rerio embryonic inne... 29 8.3
emb|AL714262.1|AL714262 AL714262 Danio rerio embryonic inne... 29 8.3
gb|BI176961.1|BI176961 EST517906 cSTE Solanum tuberosum cDN... 24 8.3
emb|AL714294.1|AL714294 AL714294 Danio rerio embryonic inne... 29 8.3
gb|BM551360.1|BM551360 AGENCOURT_6545308 NIH_MGC_88 Homo sa... 27 8.3
emb|AL726060.1|AL726060 AL726060 Danio rerio embryonic inne... 29 8.3
emb|AL725974.1|AL725974 AL725974 Danio rerio embryonic inne... 29 8.3
gb|BM458322.1|BM458322 AGENCOURT_6414022 NIH_MGC_85 Homo sa... 27 8.4
gb|BF135833.1|BF135833 601782135F1 NCI_CGAP_Lu30 Mus muscul... 26 8.4
gb|BQ229183.1|BQ229183 AGENCOURT_7543770 NIH_MGC_92 Homo sa... 23 8.5
gb|BF341973.1|BF341973 602016660F1 NCI_CGAP_Brn64 Homo sapi... 24 8.5
gb|BF683173.1|BF683173 602139135F1 NIH_MGC_46 Homo sapiens ... 29 8.5
gb|BE952724.1|BE952724 UI-M-BH4-azj-d-02-0-UI.s1 NIH_BMAP_M... 22 8.5
emb|AL725965.1|AL725965 AL725965 Danio rerio embryonic inne... 29 8.6
gb|BF672736.1|BF672736 602152047F1 NIH_MGC_81 Homo sapiens ... 26 8.8
gb|AI626432.1|AI626432 fc06b03.x1 Zebrafish WashU MPIMG EST... 27 8.8
gb|BF534791.1|BF534791 602048328F1 NCI_CGAP_SG2 Mus musculu... 26 8.8
dbj|BJ078793.1|BJ078793 BJ078793 NIBB Mochii normalized Xen... 29 8.9
gb|AW342713.1|AW342713 fi85b02.x1 Sugano Kawakami zebrafish... 27 9.2
gb|BG112511.1|BG112511 602282114F1 NIH_MGC_86 Homo sapiens ... 27 9.2
gb|BG335219.1|BG335219 602403730F1 NIH_MGC_21 Homo sapiens ... 22 9.7
gb|BI819189.1|BI819189 603034601F1 NIH_MGC_115 Homo sapiens... 29 9.8
>gb|BI585539.1|BI585539 RH25144.5prime RH Drosophila melanogaster normalized Head pFlc-1
Drosophila melanogaster cDNA clone RH25144 5 similar to
gro: FBan0008384 GO:[transcription co-repressor
(GO:0003714); signal transduction (GO:0004871)] located
on: 3R 96F11-96F12;: 08/18/2001.
Length = 552
Score = 29.5 bits (58), Expect(3) = 0.033
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = -2 / -1
Query: 124 YAYGSVFTVMPCFLALCYYVLHANITLILAMF 29
+AY + + F+A C+YVLH N+ I F
Sbjct: 204 FAYPVLCPGLARFIARCFYVLHLNLWSIFYSF 109
Score = 21.2 bits (40), Expect(3) = 0.033
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2 / -3
Query: 169 LITVCLFCYYGRYF 128
LI++CL +YG F
Sbjct: 373 LISICLPAFYGTCF 332
Score = 18.5 bits (34), Expect(3) = 0.033
Identities = 4/9 (44%), Positives = 7/9 (77%)
Frame = -2 / -2
Query: 133 YFGYAYGSV 107
+F Y++ SV
Sbjct: 335 FFSYSFSSV 309
>gb|AA540693.1|AA540693 LD20467.5prime LD Drosophila melanogaster embryo BlueScript
Drosophila melanogaster cDNA clone LD20467 5prime
similar to M20571: D.melanogaster enhancer of split
mRNA, complete cds.
Length = 517
Score = 28.1 bits (55), Expect(3) = 0.070
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2 / -1
Query: 88 FLALCYYVLHANITLILAMF 29
F+A C+YVLH N+ I F
Sbjct: 109 FIARCFYVLHLNLWSIFYSF 50
Score = 21.2 bits (40), Expect(3) = 0.070
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2 / -1
Query: 169 LITVCLFCYYGRYF 128
LI++CL +YG F
Sbjct: 316 LISICLPAFYGTCF 275
Score = 18.5 bits (34), Expect(3) = 0.070
Identities = 4/9 (44%), Positives = 7/9 (77%)
Frame = -2 / -3
Query: 133 YFGYAYGSV 107
+F Y++ SV
Sbjct: 278 FFSYSFSSV 252
>gb|BG420007.1|BG420007 602453683F1 NIH_MGC_14 Homo sapiens cDNA clone IMAGE:4591893 5'.
Length = 1046
Score = 28.6 bits (56), Expect(3) = 0.20
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = -3 / -3
Query: 96 CHVFLHSVIMFFMPILL*YWQCLVVVPRPRPR 1
C +FL S+ +FF P+LL C + R R R
Sbjct: 144 CTLFLFSI*LFFSPLLLFSACCSAELQRERER 49
Score = 20.8 bits (39), Expect(3) = 0.20
Identities = 7/15 (46%), Positives = 9/15 (59%)
Frame = -2 / -3
Query: 178 LESLITVCLFCYYGR 134
L L+ VC+FC R
Sbjct: 888 LAFLLCVCVFCLLAR 844
Score = 18.9 bits (35), Expect(3) = 0.20
Identities = 8/28 (28%), Positives = 13/28 (45%)
Frame = -3 / -3
Query: 153 CFATTVGISVMLMDRCLPSCHVFLHSVI 70
C GIS+ L +C + +HS +
Sbjct: 597 CDLAACGISLADHQSTLGACILIVHSYV 514
>gb|AW681586.1|AW681586 EST00304 E8.5 mouse craniofacial subtraction cDNA library Mus
musculus cDNA clone EGS565.
Length = 312
Score = 30.8 bits (61), Expect(2) = 0.21
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -2 / -2
Query: 139 GRYFGYAYGSVFTVMPCFLALCYY 68
GRY G +G +F PCF +L ++
Sbjct: 296 GRYLGIRFG*IFYFNPCFFSLFHF 225
Score = 21.2 bits (40), Expect(2) = 0.21
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3 / -2
Query: 21 VPRPRPR 1
VPRPRPR
Sbjct: 23 VPRPRPR 3
>gb|BF126610.1|BF126610 601650874F1 NIH_MGC_76 Homo sapiens cDNA clone IMAGE:4071523 5'.
Length = 677
Score = 29.0 bits (57), Expect(2) = 0.26
Identities = 14/44 (31%), Positives = 24/44 (53%)
Frame = -2 / -1
Query: 160 VCLFCYYGRYFGYAYGSVFTVMPCFLALCYYVLHANITLILAMF 29
+CLF ++ +FG VF+ + CF+ L L L+L++F
Sbjct: 272 LCLFSFFFLFFGAFLVVVFSSLFCFVLLPRSRLLGCFLLLLSLF 141
Score = 24.0 bits (46), Expect(2) = 0.26
Identities = 7/12 (58%), Positives = 9/12 (74%)
Frame = -2 / -3
Query: 184 FQLESLITVCLF 149
F L SL+ VC+F
Sbjct: 552 FGLASLLVVCVF 517
>gb|BF577178.1|BF577178 602135472F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE:4290665 5'.
Length = 604
Score = 37.3 bits (75), Expect = 0.31
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -2 / -2
Query: 172 SLITVCLFCYYGRYFGYAYGSVFTVMPCFLALCYYVLHANITLILAMFGSST 17
S + +CLFC +F + S V+ F A + LH ++TLI A SS+
Sbjct: 576 SYVPICLFCNVLSFFDWISWSSNLVLSSF*APVFNNLHTSLTLITAFSASSS 421
>dbj|BB452926.2|BB452926 BB452926 RIKEN full-length enriched, 12 days embryo spinal ganglion
Mus musculus cDNA clone D130020I03 3'.
Length = 653
Score = 27.2 bits (53), Expect(2) = 0.45
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2 / +1
Query: 154 LFCYYGRYFGY 122
+F Y+GRYFGY
Sbjct: 262 MFYYFGRYFGY 294
Score = 24.9 bits (48), Expect(2) = 0.45
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3 / +3
Query: 120 LMDRCLPSCHVFLHSVIMF 64
L+D+C C VFL +++F
Sbjct: 387 LLDQCSAICQVFLGYLVLF 443
>emb|AL725802.1|AL725802 AL725802 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA081ZG02 5'.
Length = 635
Score = 21.2 bits (40), Expect(4) = 0.62
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3 / -3
Query: 21 VPRPRPR 1
VPRPRPR
Sbjct: 24 VPRPRPR 4
Score = 19.8 bits (37), Expect(4) = 0.62
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 184 FQLESLITVCLF 149
F L+SLI + F
Sbjct: 512 FCLQSLIIISFF 477
Score = 18.9 bits (35), Expect(4) = 0.62
Identities = 6/15 (40%), Positives = 6/15 (40%)
Frame = -1 / -2
Query: 74 LLCSSCQYYFNTGNV 30
L C C Y NV
Sbjct: 82 LNCL*CMYVCECENV 38
Score = 17.1 bits (31), Expect(4) = 0.62
Identities = 9/36 (25%), Positives = 16/36 (44%)
Frame = -2 / -3
Query: 169 LITVCLFCYYGRYFGYAYGSVFTVMPCFLALCYYVL 62
L +VC F + +F ++ + F + YY L
Sbjct: 357 LTSVCSFVFIYYFFCCPVFALNFLKGYFTQMFYYAL 250
>dbj|AV805669.1|AV805669 AV805669 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-43-M05 3'.
Length = 418
Score = 31.8 bits (63), Expect(2) = 0.72
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = -2 / -3
Query: 118 YGSVFTVMPCFLALCYYVLHANI 50
+ SVFT CF LC Y+L+ ++
Sbjct: 95 FSSVFTTSTCFFFLCVYILYQDL 27
Score = 18.9 bits (35), Expect(2) = 0.72
Identities = 5/11 (45%), Positives = 5/11 (45%)
Frame = -2 / -3
Query: 157 CLFCYYGRYFG 125
C CY FG
Sbjct: 338 CCHCYCSGGFG 306
>dbj|AV790669.1|AV790669 AV790669 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-89-L14 3'.
Length = 419
Score = 31.8 bits (63), Expect(2) = 0.72
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = -2 / -2
Query: 118 YGSVFTVMPCFLALCYYVLHANI 50
+ SVFT CF LC Y+L+ ++
Sbjct: 121 FSSVFTTSTCFFFLCVYILYQDL 53
Score = 18.9 bits (35), Expect(2) = 0.72
Identities = 5/11 (45%), Positives = 5/11 (45%)
Frame = -2 / -2
Query: 157 CLFCYYGRYFG 125
C CY FG
Sbjct: 364 CCHCYCSGGFG 332
>emb|AL728093.1|AL728093 AL728093 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA094ZE05 5'.
Length = 649
Score = 24.9 bits (48), Expect(3) = 0.82
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2 / +2
Query: 2 RGRGRGTTTKH 34
RGRGRGTT H
Sbjct: 5 RGRGRGTTCVH 37
Score = 21.7 bits (41), Expect(3) = 0.82
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2 / +2
Query: 95 HDGKHRSISITEIP 136
H GKH I++ E P
Sbjct: 191 HTGKHHPIAVAEGP 232
Score = 18.0 bits (33), Expect(3) = 0.82
Identities = 3/5 (60%), Positives = 4/5 (80%)
Frame = +2 / +1
Query: 203 LSCKC 217
+SC C
Sbjct: 358 VSCPC 372
>gb|BM356662.1|BM356662 12IV-G9 Triphysaria versicolor root-tip, early DMBQ-induced
transcript cDNA library Triphysaria versicolor cDNA.
Length = 608
Score = 27.2 bits (53), Expect(2) = 1.0
Identities = 9/24 (37%), Positives = 14/24 (57%)
Frame = +1 / +3
Query: 112 IHKHNRNTDRSSKTNKQLLKIQVE 183
+H H N+ + +KTNKQ + E
Sbjct: 81 LHTHRHNSKKQTKTNKQASQTDYE 152
Score = 23.5 bits (45), Expect(2) = 1.0
Identities = 6/9 (66%), Positives = 9/9 (99%)
Frame = +1 / +1
Query: 1 AWSRPRYYY 27
AWSRPR+++
Sbjct: 1 AWSRPRFFF 27
>gb|BF580014.1|BF580014 602095210F1 NCI_CGAP_Co24 Mus musculus cDNA clone IMAGE:4209363 5'.
Length = 795
Score = 35.4 bits (71), Expect = 1.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2 / +3
Query: 202 SCRSIGFQLESLITVCLFCYYGRYFGYAYG 113
SC S + SL +VC C GRY GY YG
Sbjct: 660 SCLSHSWLSSSLFSVCSCCL*GRYGGYPYG 749
>gb|AA981375.1|AA981375 vx56c12.r1 Stratagene mouse macrophage (#937306) Mus musculus cDNA
clone IMAGE:1279222 5' similar to SW:VP36_CANFA P49256
VESICULAR INTEGRAL-MEMBRANE PROTEIN VIP36 PRECURSOR ;.
Length = 493
Score = 22.6 bits (43), Expect(3) = 1.2
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3 / +1
Query: 39 WQCLVVVPR 13
W C VV PR
Sbjct: 394 WHCCVVHPR 420
Score = 20.8 bits (39), Expect(3) = 1.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -2 / +2
Query: 151 FCYYGRYFGY 122
FC +GR+ GY
Sbjct: 110 FCCWGRWCGY 139
Score = 19.8 bits (37), Expect(3) = 1.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -2 / +2
Query: 115 GSVFTVMPCFL 83
GS++ PCFL
Sbjct: 296 GSIWNHQPCFL 328
>gb|BM571400.1|BM571400 fw75g10.y1 Gong zebrafish testis Danio rerio cDNA clone 5616211 5'.
Length = 393
Score = 28.1 bits (55), Expect(2) = 1.2
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -1 / +2
Query: 98 HAMFSCTLLLCSSCQYYFNTG 36
H M S + LC+ YYF TG
Sbjct: 131 HTM*SVNVCLCTVANYYFKTG 193
Score = 21.7 bits (41), Expect(2) = 1.2
Identities = 4/17 (23%), Positives = 9/17 (52%)
Frame = -2 / +1
Query: 124 YAYGSVFTVMPCFLALC 74
+ + ++ PC + LC
Sbjct: 7 FTFPHFYSAPPCIMQLC 57
>gb|BI880016.1|BI880016 fm68f03.x1 Zebrafish adult retina cDNA Danio rerio cDNA clone
4200701 3'.
Length = 415
Score = 28.1 bits (55), Expect(2) = 1.3
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -1 / -1
Query: 98 HAMFSCTLLLCSSCQYYFNTG 36
H M S + LC+ YYF TG
Sbjct: 178 HTM*SVNVCLCTVANYYFKTG 116
Score = 21.7 bits (41), Expect(2) = 1.3
Identities = 4/17 (23%), Positives = 9/17 (52%)
Frame = -2 / -3
Query: 124 YAYGSVFTVMPCFLALC 74
+ + ++ PC + LC
Sbjct: 302 FTFPHFYSAPPCIMQLC 252
>gb|BG296407.1|BG296407 602394287F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4506069 5'.
Length = 1875
Score = 31.8 bits (63), Expect(2) = 1.4
Identities = 9/17 (52%), Positives = 14/17 (81%)
Frame = -2 / -2
Query: 115 GSVFTVMPCFLALCYYV 65
GS+F +PC++ LC+YV
Sbjct: 206 GSLFCCVPCYVVLCFYV 156
Score = 21.2 bits (40), Expect(2) = 1.4
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -2 / -3
Query: 172 SLITVCLFCYY 140
SL +VC+FC +
Sbjct: 1147 SLFSVCVFCLF 1115
>gb|BM778605.1|BM778605 fx52c02.y1 Zebrafish SJD 5 day embryo Danio rerio cDNA clone
5626755 5'.
Length = 437
Score = 28.1 bits (55), Expect(2) = 1.4
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -1 / +3
Query: 98 HAMFSCTLLLCSSCQYYFNTG 36
H M S + LC+ YYF TG
Sbjct: 276 HTM*SVNVCLCTVANYYFKTG 338
Score = 21.7 bits (41), Expect(2) = 1.4
Identities = 4/17 (23%), Positives = 9/17 (52%)
Frame = -2 / +1
Query: 124 YAYGSVFTVMPCFLALC 74
+ + ++ PC + LC
Sbjct: 151 FTFPHFYSAPPCIMQLC 201
>gb|BF337280.1|BF337280 602034639F1 NCI_CGAP_Brn64 Homo sapiens cDNA clone IMAGE:4182729
5'.
Length = 872
Score = 25.3 bits (49), Expect(2) = 1.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / -1
Query: 99 SCHVFLHSVIMFFMPILL*YWQCLVVV 19
SC VFL + + F ++ +W LVV+
Sbjct: 482 SCFVFLFRLFLRFGRLMSVFWVLLVVI 402
Score = 25.3 bits (49), Expect(2) = 1.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2 / -3
Query: 169 LITVCLFCYYGRYF 128
L+ VCLFC +G F
Sbjct: 840 LVLVCLFCVFGFLF 799
>gb|BF974300.1|BF974300 602243956F1 NIH_MGC_48 Homo sapiens cDNA clone IMAGE:4335229 5'.
Length = 1187
Score = 35.0 bits (70), Expect = 1.5
Identities = 8/23 (34%), Positives = 19/23 (81%)
Frame = -3 / -3
Query: 84 LHSVIMFFMPILL*YWQCLVVVP 16
L +++FF+P+L+ +W C++++P
Sbjct: 1137 LQQLVLFFLPLLIRWWSCVILLP 1069
>dbj|BJ071208.1|BJ071208 BJ071208 NIBB Mochii normalized Xenopus tailbud library Xenopus
laevis cDNA clone XL093i21 5'.
Length = 642
Score = 35.0 bits (70), Expect = 1.5
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = -2 / +1
Query: 157 CLFCYYGRYFGYAYGSVFTVMPCFLALCYYV 65
CL+C+YG G +VF PC LC V
Sbjct: 106 CLYCHYGETAGQNNYTVFVFRPCLCFLCLNV 198
>gb|BI493520.1|BI493520 df102b01.y1 Morton Fetal Cochlea Homo sapiens cDNA clone
IMAGE:2540857 5'.
Length = 586
Score = 35.0 bits (70), Expect = 1.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2 / -3
Query: 160 VCLFCYYGRYFGYAYGSVFTVMPCFLALCYYVLHANITL 44
VC++ Y + Y Y +++ MPC + YV+H + +
Sbjct: 560 VCVYVYTHTHSNYVYITMYMYMPCIYRI*LYVMHIKLII 444
>gb|BE205858.1|BE205858 bb47f01.x1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE:3009817 3'
similar to SW:NEUR_FELCA P41737 NEURONAL PROTEIN.
;contains Alu repetitive element;.
Length = 485
Score = 25.3 bits (49), Expect(2) = 1.5
Identities = 10/28 (35%), Positives = 14/28 (49%)
Frame = +1 / -1
Query: 109 PIHKHNRNTDRSSKTNKQLLKIQVENQC 192
PIH N+D +S Q + +QV C
Sbjct: 329 PIHGAKHNSDSNSTKQHQKIHLQVNLTC 246
Score = 24.4 bits (47), Expect(2) = 1.5
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = +2 / -2
Query: 59 MKNIITECKKTWHDGKHRSI 118
++N + C+K W KH+ +
Sbjct: 397 VENFLEACRKIWCSSKHKKM 338
>gb|AA526844.1|AA526844 ni92d10.s1 NCI_CGAP_Pr21 Homo sapiens cDNA clone IMAGE:984307 3'.
Length = 669
Score = 30.8 bits (61), Expect(2) = 1.6
Identities = 10/17 (58%), Positives = 14/17 (81%)
Frame = -1 / -3
Query: 98 HAMFSCTLLLCSSCQYY 48
H++F C LLL S+CQY+
Sbjct: 370 HSIFICFLLLVSNCQYF 320
Score = 19.4 bits (36), Expect(2) = 1.6
Identities = 5/8 (62%), Positives = 5/8 (62%)
Frame = -2 / -3
Query: 163 TVCLFCYY 140
T C CYY
Sbjct: 646 TACAICYY 623
>gb|BI198235.1|BI198235 602763347F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE:4898866 5'.
Length = 1220
Score = 27.6 bits (54), Expect(2) = 1.7
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -2 / -3
Query: 199 CRSIGFQLESLITVCLFCY 143
CRS+ F L S TVC+ C+
Sbjct: 852 CRSLLFVLVSCFTVCVSCF 796
Score = 24.4 bits (47), Expect(2) = 1.7
Identities = 9/34 (26%), Positives = 16/34 (46%)
Frame = -3 / -3
Query: 153 CFATTVGISVMLMDRCLPSCHVFLHSVIMFFMPI 52
CF ++V +SV C+ C + +FF +
Sbjct: 801 CFLSSVVVSVFFFAFCMSCCVSRFVCIFLFFFVV 700
>gb|BG113080.1|BG113080 602283732F1 NIH_MGC_86 Homo sapiens cDNA clone IMAGE:4371319 5'.
Length = 1322
Score = 27.6 bits (54), Expect(2) = 1.8
Identities = 12/39 (30%), Positives = 20/39 (50%)
Frame = -2 / -3
Query: 202 SCRSIGFQLESLITVCLFCYYGRYFGYAYGSVFTVMPCF 86
SC ++GF + + LF + + ++ SVF V CF
Sbjct: 930 SCAALGFFCPASFFLILFFVFSFSWSFSCASVFPVSFCF 814
Score = 24.4 bits (47), Expect(2) = 1.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3 / -3
Query: 87 FLHSVIMFFMPILL 46
F H V++FF PILL
Sbjct: 795 FSHCVLIFFPPILL 754
>gb|BM357045.1|BM357045 16I-G4 Triphysaria versicolor root-tip, early DMBQ-induced
transcript cDNA library Triphysaria versicolor cDNA.
Length = 417
Score = 23.5 bits (45), Expect(3) = 2.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1 / -2
Query: 116 WIGVYRHAMFSCTLLL 69
W+ + MFSCTLLL
Sbjct: 293 WMLLLYSRMFSCTLLL 246
Score = 19.4 bits (36), Expect(3) = 2.0
Identities = 5/5 (100%), Positives = 5/5 (100%)
Frame = -3 / -1
Query: 18 PRPRP 4
PRPRP
Sbjct: 18 PRPRP 4
Score = 18.9 bits (35), Expect(3) = 2.0
Identities = 4/8 (50%), Positives = 5/8 (62%)
Frame = -3 / -3
Query: 225 HNQHLHDS 202
H+ H HD
Sbjct: 334 HHHHHHDH 311
>gb|BF243823.1|BF243823 601877588F1 NIH_MGC_55 Homo sapiens cDNA clone IMAGE:4105988 5'.
Length = 1863
Score = 34.5 bits (69), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = -2 / -2
Query: 109 VFTVMPCFLALCYYVLHANITLILAMFGSSTS 14
VF ++ CF+ C YV H + +A+FGS S
Sbjct: 1343 VFVLLLCFVCPCEYVCHGRVVGSVALFGSLLS 1248
>gb|BE371876.1|BE371876 601217972F1 NCI_CGAP_Lu29 Mus musculus cDNA clone IMAGE:3587177 5'.
Length = 452
Score = 34.5 bits (69), Expect = 2.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1 / -2
Query: 110 GVYRHAMFSCTLLLCSSCQYYFNT 39
G H MFS LL+C+SC Y+F+T
Sbjct: 118 GFSPH*MFSTFLLVCTSCGYFFHT 47
>gb|BI085606.1|BI085606 602870148F1 NIH_MGC_98 Homo sapiens cDNA clone IMAGE:5013371 5'.
Length = 541
Score = 29.0 bits (57), Expect(2) = 2.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2 / -3
Query: 166 ITVCLFCYYGRYFGYAYGSVFTVMPC 89
+ VC FC++ F + + SVF + C
Sbjct: 449 VVVCSFCFFVLLFFFLFSSVFVLSCC 372
Score = 20.3 bits (38), Expect(2) = 2.3
Identities = 7/13 (53%), Positives = 8/13 (60%)
Frame = -1 / -2
Query: 83 CTLLLCSSCQYYF 45
C+LLLC C F
Sbjct: 387 CSLLLCVLCLVMF 349
>gb|BI161215.1|BI161215 602865673F1 NIH_MGC_42 Homo sapiens cDNA clone IMAGE:5019547 5'.
Length = 1074
Score = 29.5 bits (58), Expect(2) = 2.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1 / +2
Query: 115 HKHNRNTDRSSKTNKQ 162
HKHN +T R TNKQ
Sbjct: 956 HKHNHDTQRKQHTNKQ 1003
Score = 20.8 bits (39), Expect(2) = 2.4
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +2 / +1
Query: 86 KTWHDGKHR 112
++WH G HR
Sbjct: 646 RSWHTGHHR 672
>gb|BF573002.1|BF573002 602078814F2 NIH_MGC_62 Homo sapiens cDNA clone IMAGE:4253331 5'.
Length = 1012
Score = 23.5 bits (45), Expect(3) = 2.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -3 / -1
Query: 90 VFLHSVIMFFMPILL*Y 40
VFL + FF +L+ Y
Sbjct: 157 VFLSFFVFFFQVVLVFY 107
Score = 20.3 bits (38), Expect(3) = 2.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = -1 / -1
Query: 113 IGVYRHAMFSCTL 75
+ + A FSCTL
Sbjct: 682 LSCFSFAFFSCTL 644
Score = 20.3 bits (38), Expect(3) = 2.5
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = -2 / -3
Query: 202 SCRSIGFQLESLITVCLFCYYGRYF 128
SC I SL +C+FC F
Sbjct: 944 SCSLIVSLFCSLALICVFCSLSVLF 870
>gb|BG473414.1|BG473414 602516193F1 NIH_MGC_16 Homo sapiens cDNA clone IMAGE:4648030 5'.
Length = 646
Score = 21.7 bits (41), Expect(3) = 2.6
Identities = 6/18 (33%), Positives = 11/18 (60%)
Frame = -2 / -1
Query: 157 CLFCYYGRYFGYAYGSVF 104
C FC++ + Y + S+F
Sbjct: 451 CFFCFFFLFCVYCFVSLF 398
Score = 21.7 bits (41), Expect(3) = 2.6
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -1 / -1
Query: 89 FSCTLLLCSSCQYYF 45
F C + CS C ++F
Sbjct: 382 FFCFVCFCSLCVFFF 338
Score = 19.4 bits (36), Expect(3) = 2.6
Identities = 7/15 (46%), Positives = 9/15 (59%)
Frame = -2 / -2
Query: 184 FQLESLITVCLFCYY 140
F L L VC FC++
Sbjct: 633 FFLFLLWCVCFFCFF 589
>gb|BI628706.1|BI628706 RH57229.5prime RH Drosophila melanogaster normalized Head pFlc-1
Drosophila melanogaster cDNA clone RH57229 5 similar to
gro: FBan0008384 GO:[transcription co-repressor
(GO:0003714); signal transduction (GO:0004871)] located
on: 3R 96F11-96F12;: 08/22/2001.
Length = 451
Score = 27.6 bits (54), Expect(2) = 2.6
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = -2 / -2
Query: 124 YAYGSVFTVMPCFLALCYYVLHANITLILAMF 29
+AY + + F+A C YVLH N+ I F
Sbjct: 204 FAYPVLCPGLARFIARCLYVLHLNLWSIFYSF 109
Score = 21.2 bits (40), Expect(2) = 2.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2 / -1
Query: 169 LITVCLFCYYGRYF 128
LI++CL +YG F
Sbjct: 373 LISICLPAFYGTCF 332
>gb|BE777572.1|BE777572 601348467F1 NIH_MGC_54 Homo sapiens cDNA clone IMAGE:3686801 5'.
Length = 1615
Score = 25.8 bits (50), Expect(2) = 2.7
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = -3 / -2
Query: 75 VIMFFMPILL*YWQCLV 25
V+ F P+LL +W CLV
Sbjct: 360 VVAFVWPLLLFHWCCLV 310
Score = 25.8 bits (50), Expect(2) = 2.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2 / -2
Query: 175 ESLITVCLFCYYGRYFGYAYGSVFTVMPCF 86
++++ VCLFC++ F S+F + F
Sbjct: 477 DAVVVVCLFCFFSFSFVCGVCSLFVSLLSF 388
>emb|AL715408.1|AL715408 AL715408 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA014ZA12 5'.
Length = 645
Score = 29.0 bits (57), Expect(2) = 2.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / +1
Query: 1 AWSRPRYYY 27
AWSRPRYYY
Sbjct: 4 AWSRPRYYY 30
Score = 20.3 bits (38), Expect(2) = 2.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1 / +3
Query: 106 TPIHKHNRNTDRSSKTNK 159
T IH H R KTNK
Sbjct: 495 THIHTHARAHTTQVKTNK 548
>emb|AL722457.1|AL722457 AL722457 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA059ZB12 5'.
Length = 670
Score = 26.3 bits (51), Expect(2) = 2.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1 / +2
Query: 118 KHNRNTDRSSKTNKQLLKIQV 180
K+N+ D SKT KQ K Q+
Sbjct: 281 KNNKKEDSVSKTKKQSSKQQI 343
Score = 23.1 bits (44), Expect(2) = 2.8
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 2 RGRGRGTTTK 31
RGRGRGT T+
Sbjct: 5 RGRGRGTATQ 34
>gb|AI771007.1|AI771007 SWAMCAC31C07SK Brugia malayi adult male cDNA (SAW94NL-BmAM) Brugia
malayi cDNA clone SWAMCAC31C07 5'.
Length = 495
Score = 28.6 bits (56), Expect(2) = 2.8
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = -2 / -3
Query: 154 LFCYYGRYFGYAYGSVFTVMPCFLALCYYVLHA 56
++ Y R++ Y S+ ++PC ++C ++H+
Sbjct: 202 IWIYLFRHYSKPYISMIGLVPCLPSMCNLIIHS 104
Score = 20.3 bits (38), Expect(2) = 2.8
Identities = 5/7 (71%), Positives = 6/7 (85%)
Frame = -3 / -2
Query: 225 HNQHLHD 205
HN H+HD
Sbjct: 347 HNNHMHD 327
>dbj|AV311519.2|AV311519 AV311519 RIKEN full-length enriched, 8 days embryo Mus musculus
cDNA clone 5730598F06 3'.
Length = 994
Score = 34.1 bits (68), Expect = 2.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1 / -1
Query: 116 WIGVYRHAMFSCTLLLCSSCQYYFNTGNVW 27
W + R F CT LL SC + N N W
Sbjct: 250 WATILRSISFECTSLLGGSCINFINENNTW 161
>gb|BG177765.1|BG177765 602314959F1 NIH_MGC_85 Homo sapiens cDNA clone IMAGE:4420623 5'.
Length = 811
Score = 34.1 bits (68), Expect = 2.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2 / -1
Query: 160 VCLFCYYGRYFGYAYGSVFTVMPCFLALCYYVLHANITLILAMF 29
+CLFC++GR Y + FTV C + +++ + + +F
Sbjct: 667 LCLFCFFGRLSVYVLCAWFTVSYCMYVVVFFLPRLSCFYVSGVF 536
>gb|BG393710.1|BG393710 602412139F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:4541000 5'.
Length = 1095
Score = 34.1 bits (68), Expect = 2.9
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = -3 / -1
Query: 138 VGISVMLMDRCLPSCHVFLHSVIMFFMP 55
+G+SV+L+ C PSC V L V+ F P
Sbjct: 1047 LGVSVVLLSCCCPSCRVSLLVVLSLFCP 964
>emb|AL729224.1|AL729224 AL729224 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA102ZB03 5'.
Length = 589
Score = 23.1 bits (44), Expect(3) = 2.9
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2 / -3
Query: 172 SLITVCLFCYYG 137
S ITVC F YYG
Sbjct: 569 SSITVCRFEYYG 534
Score = 21.2 bits (40), Expect(3) = 2.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3 / -2
Query: 21 VPRPRPR 1
VPRPRPR
Sbjct: 24 VPRPRPR 4
Score = 18.0 bits (33), Expect(3) = 2.9
Identities = 5/7 (71%), Positives = 7/7 (99%)
Frame = -3 / -1
Query: 93 HVFLHSV 73
HV++HSV
Sbjct: 100 HVYMHSV 80
>gb|AA545888.1|AA545888 SWMFCA2438SK Brugia malayi microfilaria cDNA (SAW94LS-BmMf) Brugia
malayi cDNA clone SWMFCA2438 5'.
Length = 506
Score = 28.6 bits (56), Expect(2) = 2.9
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = -2 / -3
Query: 154 LFCYYGRYFGYAYGSVFTVMPCFLALCYYVLHA 56
++ Y R++ Y S+ ++PC ++C ++H+
Sbjct: 219 IWIYLFRHYSKPYISMIGLVPCLPSMCNLIIHS 121
Score = 20.3 bits (38), Expect(2) = 2.9
Identities = 5/7 (71%), Positives = 6/7 (85%)
Frame = -3 / -2
Query: 225 HNQHLHD 205
HN H+HD
Sbjct: 364 HNNHMHD 344
>emb|AL727505.1|AL727505 AL727505 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA097ZD12 5'.
Length = 513
Score = 25.8 bits (50), Expect(2) = 3.0
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -2 / +2
Query: 181 QLESLITVCLFCYYGRYFGYA 119
QL+ IT C F + G F YA
Sbjct: 101 QLDQPITACCFNHNGNIFAYA 163
Score = 23.1 bits (44), Expect(2) = 3.0
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3 / +1
Query: 30 LVVVPRPRPR 1
L+ VPRPRPR
Sbjct: 484 LIDVPRPRPR 513
>gb|AI473327.1|AI473327 th83e11.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:2125292
3'.
Length = 227
Score = 28.1 bits (55), Expect(2) = 3.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +2
Query: 98 HAMFSCTLLLCSSCQYYFNTGNV 30
HA+F+ LL+ SS Y NTG V
Sbjct: 35 HALFASILLISSSICYAVNTGYV 103
Score = 19.4 bits (36), Expect(2) = 3.0
Identities = 3/13 (23%), Positives = 9/13 (69%)
Frame = -3 / +3
Query: 126 VMLMDRCLPSCHV 88
+ ++ +C+P H+
Sbjct: 15 LFILAKCMPCLHL 53
>emb|AL723806.1|AL723806 AL723806 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA069ZE01 5'.
Length = 615
Score = 22.6 bits (43), Expect(3) = 3.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1 / +1
Query: 1 AWSRPRY 21
AWSRPRY
Sbjct: 4 AWSRPRY 24
Score = 21.7 bits (41), Expect(3) = 3.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2 / +3
Query: 95 HDGKHRSISITEIP 136
H GKH I++ E P
Sbjct: 183 HTGKHHPIAVAEGP 224
Score = 18.0 bits (33), Expect(3) = 3.1
Identities = 3/5 (60%), Positives = 4/5 (80%)
Frame = +2 / +2
Query: 203 LSCKC 217
+SC C
Sbjct: 350 VSCPC 364
>gb|BG477060.1|BG477060 602524414F1 NIH_MGC_20 Homo sapiens cDNA clone IMAGE:4642706 5'.
Length = 1026
Score = 22.6 bits (43), Expect(3) = 3.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1 / -3
Query: 92 MFSCTLLLCSSCQ 54
M+ C LL+C SC+
Sbjct: 499 MWLCVLLVCFSCR 461
Score = 20.8 bits (39), Expect(3) = 3.4
Identities = 6/16 (37%), Positives = 9/16 (55%)
Frame = -2 / -3
Query: 190 IGFQLESLITVCLFCY 143
+GF L VC+ C+
Sbjct: 1015 VGFFLPCFAVVCVLCF 968
Score = 20.3 bits (38), Expect(3) = 3.4
Identities = 7/16 (43%), Positives = 10/16 (61%)
Frame = -2 / -1
Query: 124 YAYGSVFTVMPCFLAL 77
+ + SVF PCF +L
Sbjct: 828 FCFCSVFLAAPCF*SL 781
>gb|AI267462.1|AI267462 aq65b02.x1 Stanley Frontal SN pool 2 Homo sapiens cDNA clone
IMAGE:2035755.
Length = 419
Score = 22.6 bits (43), Expect(3) = 3.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3 / -3
Query: 30 LVVVPRPRPR 1
L +VPRPRPR
Sbjct: 33 LSLVPRPRPR 4
Score = 21.7 bits (41), Expect(3) = 3.5
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2 / -1
Query: 115 GSVFTVMPCFLALCYY 68
GS F+++PC Y+
Sbjct: 353 GSCFSILPCASLAGYF 306
Score = 16.6 bits (30), Expect(3) = 3.5
Identities = 2/8 (25%), Positives = 5/8 (62%)
Frame = -1 / -3
Query: 53 YYFNTGNV 30
+YF+ +
Sbjct: 309 FYFSRNRI 286
>gb|AI853470.1|AI853470 UI-M-BH0-ajy-g-08-0-UI.s1 NIH_BMAP_M_S1 Mus musculus cDNA clone
UI-M-BH0-ajy-g-08-0-UI 3'.
Length = 469
Score = 25.3 bits (49), Expect(2) = 3.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3 / -1
Query: 81 HSVIMFFMPILL*YWQC 31
HS+++FF +LL Y+ C
Sbjct: 307 HSLLIFFCSLLLCYFHC 257
Score = 23.1 bits (44), Expect(2) = 3.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2 / -2
Query: 187 GFQLESLITVCLFCYY 140
G + ES + VC+ CY+
Sbjct: 366 GIKTESNVLVCIGCYW 319
>gb|BF502069.2|BF502069 AT17687.5prime AT Drosophila melanogaster adult testes pOTB7
Drosophila melanogaster cDNA clone AT17687 5.
Length = 356
Score = 25.3 bits (49), Expect(2) = 3.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2 / -2
Query: 169 LITVCLFCYYGRYFGY 122
L+ C FC RYFGY
Sbjct: 316 LVN*CRFCLNLRYFGY 269
Score = 22.6 bits (43), Expect(2) = 3.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -1 / -3
Query: 98 HAMFSCTLLLCSSCQYYF 45
H C LL+CS + YF
Sbjct: 168 HLAIFCQLLMCSKEKEYF 115
>emb|AL728929.1|AL728929 AL728929 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA104ZE04 5'.
Length = 659
Score = 29.0 bits (57), Expect(2) = 3.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 1 AWSRPRYYYQTLP 39
AWSRPRYY +P
Sbjct: 4 AWSRPRYYISQIP 42
Score = 19.8 bits (37), Expect(2) = 3.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +2
Query: 183 KPMLLHDYHANA 218
KP+LLH H A
Sbjct: 494 KPLLLHKRHFRA 529
>gb|AW056173.1|AW056173 660005B08.y1 660 - Mixed stages of anther and pollen Zea mays cDNA.
Length = 378
Score = 33.6 bits (67), Expect = 3.9
Identities = 12/41 (29%), Positives = 23/41 (55%)
Frame = -2 / -3
Query: 151 FCYYGRYFGYAYGSVFTVMPCFLALCYYVLHANITLILAMF 29
F ++ +FG + F + CFL ++++H N+ L L+ F
Sbjct: 367 FFFFFFFFGTKAAAKFDISSCFLNKKHFIIHINLNLHLSRF 245
>gb|BF337166.1|BF337166 602034745F1 NCI_CGAP_Brn64 Homo sapiens cDNA clone IMAGE:4182634
5'.
Length = 728
Score = 33.6 bits (67), Expect = 3.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2 / -2
Query: 178 LESLITVCLFCYYGRYFGYAYGSVFTVMPCFLALCYY 68
L S + +CL C++ +F + F V+ FL LC++
Sbjct: 397 LLSFVVLCLSCFFFFFFSFFVCGCFVVVFVFLFLCFF 287
>dbj|AU039578.1|AU039578 AU039578 Dictyostelium discoideum SL (H.Urushihara) Dictyostelium
discoideum cDNA clone SLE782.
Length = 390
Score = 33.6 bits (67), Expect = 3.9
Identities = 11/30 (36%), Positives = 15/30 (49%)
Frame = -2 / -1
Query: 157 CLFCYYGRYFGYAYGSVFTVMPCFLALCYY 68
C +CYY Y+ Y Y S + C+ YY
Sbjct: 114 CYYCYYCYYYSYCYCSYYCY*YCYWYYSYY 25
>dbj|AU039972.1|AU039972 AU039972 Dictyostelium discoideum SL (H.Urushihara) Dictyostelium
discoideum cDNA clone SLG868.
Length = 409
Score = 33.6 bits (67), Expect = 3.9
Identities = 11/30 (36%), Positives = 15/30 (49%)
Frame = -2 / -3
Query: 157 CLFCYYGRYFGYAYGSVFTVMPCFLALCYY 68
C +CYY Y+ Y Y S + C+ YY
Sbjct: 131 CYYCYYCYYYSYCYCSYYCY*YCYWYYSYY 42
>gb|BI558727.1|BI558727 603241444F1 NCI_CGAP_Mam4 Mus musculus cDNA clone IMAGE:5294267 5'.
Length = 1142
Score = 33.6 bits (67), Expect = 3.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3 / -3
Query: 102 PSCHVFLHSVIMFFMPILL*YWQCLVV 22
PSC V L ++++FF+ LL W CL V
Sbjct: 981 PSCVVLLVALLVFFLFFLLSLWSCLFV 901
>emb|AL731030.1|AL731030 AL731030 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA120ZB06 5'.
Length = 221
Score = 23.5 bits (45), Expect(2) = 3.9
Identities = 6/21 (28%), Positives = 12/21 (56%)
Frame = +2 / -3
Query: 80 CKKTWHDGKHRSISITEIPTV 142
C+K+W D ++T +P +
Sbjct: 174 CRKSWRDDVLLQFALTNLPEI 112
Score = 23.5 bits (45), Expect(2) = 3.9
Identities = 7/8 (87%), Positives = 8/8 (99%)
Frame = +1 / -1
Query: 1 AWSRPRYY 24
AWSRPRY+
Sbjct: 218 AWSRPRYW 195
>gb|AA630591.1|AA630591 ac11c01.s1 Stratagene HeLa cell s3 937216 Homo sapiens cDNA clone
IMAGE:856128 3'.
Length = 308
Score = 28.1 bits (55), Expect(2) = 4.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +2
Query: 98 HAMFSCTLLLCSSCQYYFNTGNV 30
HA+F+ LL+ SS Y NTG V
Sbjct: 35 HALFASILLISSSICYAVNTGYV 103
Score = 19.4 bits (36), Expect(2) = 4.3
Identities = 3/13 (23%), Positives = 9/13 (69%)
Frame = -3 / +3
Query: 126 VMLMDRCLPSCHV 88
+ ++ +C+P H+
Sbjct: 15 LFILAKCMPCLHL 53
>gb|BG112403.1|BG112403 602281978F1 NIH_MGC_86 Homo sapiens cDNA clone IMAGE:4369674 5'.
Length = 1040
Score = 25.3 bits (49), Expect(2) = 4.3
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = -2 / -3
Query: 184 FQLESLITVCLFC 146
F L L+ VCLFC
Sbjct: 1038 FSLLLLLCVCLFC 1000
Score = 24.0 bits (46), Expect(2) = 4.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1 / -3
Query: 89 FSCTLLLCSSCQYYF 45
FS LLCS C Y F
Sbjct: 903 FSFVSLLCSCCSYCF 859
>gb|AI267857.1|AI267857 aq49c08.x1 Stanley Frontal NB pool 2 Homo sapiens cDNA clone
IMAGE:2034254.
Length = 469
Score = 22.6 bits (43), Expect(3) = 4.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3 / -2
Query: 27 VVVPRPRPR 1
V VPRPRPR
Sbjct: 27 VYVPRPRPR 1
Score = 19.8 bits (37), Expect(3) = 4.4
Identities = 6/14 (42%), Positives = 8/14 (56%)
Frame = -3 / -2
Query: 111 RCLPSCHVFLHSVI 70
RC CH FL+ +
Sbjct: 198 RCQVLCHFFLYPFV 157
Score = 18.5 bits (34), Expect(3) = 4.4
Identities = 4/10 (40%), Positives = 7/10 (70%)
Frame = -2 / -1
Query: 169 LITVCLFCYY 140
+ VC++C Y
Sbjct: 229 MAVVCIYCLY 200
>gb|BI767369.1|BI767369 603057510F1 NIH_MGC_122 Homo sapiens cDNA clone IMAGE:5206970 5'.
Length = 1328
Score = 25.3 bits (49), Expect(3) = 4.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3 / -1
Query: 90 VFLHSVIMFFMPILL*YWQCLVV 22
+FL I+FF L Y+ CLVV
Sbjct: 905 LFLSLFILFFFYFFLLYFLCLVV 837
Score = 20.3 bits (38), Expect(3) = 4.5
Identities = 8/31 (25%), Positives = 13/31 (41%)
Frame = -2 / -3
Query: 160 VCLFCYYGRYFGYAYGSVFTVMPCFLALCYY 68
VC FC+ +F + CF+ + Y
Sbjct: 978 VCFFCFCVCFFFVFSSFCSVFLACFVFVFVY 886
Score = 19.4 bits (36), Expect(3) = 4.5
Identities = 5/12 (41%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 178 LESLITVCLFCY 143
L S+ +C FC+
Sbjct: 1262 LLSVFRLCFFCF 1227
>dbj|AU136203.1|AU136203 AU136203 PLACE1 Homo sapiens cDNA clone PLACE1003735 5'.
Length = 806
Score = 27.2 bits (53), Expect(2) = 4.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3 / -2
Query: 87 FLHSVIMFFMPILL*Y 40
+ H+V+MFF P+LL Y
Sbjct: 334 YCHAVLMFFSPLLLFY 287
Score = 21.7 bits (41), Expect(2) = 4.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3 / -3
Query: 111 RCLPSCHVFLHSVI 70
RCL H+F H V+
Sbjct: 690 RCLGXFHIFNHRVL 649
>gb|BI462948.1|BI462948 603204153F1 NIH_MGC_97 Homo sapiens cDNA clone IMAGE:5270100 5'.
Length = 1114
Score = 29.9 bits (59), Expect(2) = 4.6
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -2 / -2
Query: 160 VCLFCYYGRYFGYAYGSVFTVMPCFLALC 74
VCLFC + +F + F V CF+ C
Sbjct: 885 VCLFCLFFSFFFFFLLYFFVVCVCFVDCC 799
Score = 19.4 bits (36), Expect(2) = 4.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -3 / -2
Query: 90 VFLHSVIMFFMPI 52
+F HS +FF+ I
Sbjct: 375 LFFHSFFLFFLVI 337
>gb|AA063678.1|AA063678 T3365 MVAT4 bloodstream form of serodeme WRATat1.1 Trypanosoma
brucei rhodesiense cDNA 5'.
Length = 330
Score = 26.7 bits (52), Expect(2) = 4.6
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = -2 / -2
Query: 154 LFCYYGRYFGYAYGSVFTVMP 92
L+C+ +F + + +VF + P
Sbjct: 329 LYCWLSAWFCFGFMTVFIIWP 267
Score = 20.8 bits (39), Expect(2) = 4.6
Identities = 7/28 (25%), Positives = 10/28 (35%)
Frame = -3 / -3
Query: 96 CHVFLHSVIMFFMPILL*YWQCLVVVPR 13
C F + F ++ W C PR
Sbjct: 217 CSSFGLLTLQFTARLIRLLWLCFYAAPR 134
>gb|BF435210.1|BF435210 nab36d05.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone
IMAGE:3267896 3'.
Length = 341
Score = 28.1 bits (55), Expect(2) = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +1
Query: 98 HAMFSCTLLLCSSCQYYFNTGNV 30
HA+F+ LL+ SS Y NTG V
Sbjct: 40 HALFASILLISSSICYAVNTGYV 108
Score = 19.4 bits (36), Expect(2) = 4.8
Identities = 3/13 (23%), Positives = 9/13 (69%)
Frame = -3 / +2
Query: 126 VMLMDRCLPSCHV 88
+ ++ +C+P H+
Sbjct: 20 LFILAKCMPCLHL 58
>emb|AL719018.1|AL719018 AL719018 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA036ZA08 5'.
Length = 660
Score = 21.7 bits (41), Expect(3) = 4.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2 / -3
Query: 175 ESLITVCLFCYYGRYF 128
ESLI +C+ Y G Y
Sbjct: 598 ESLIQMCIQ*YPGWYL 551
Score = 21.2 bits (40), Expect(3) = 4.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3 / -1
Query: 21 VPRPRPR 1
VPRPRPR
Sbjct: 24 VPRPRPR 4
Score = 18.9 bits (35), Expect(3) = 4.8
Identities = 4/6 (66%), Positives = 5/6 (82%)
Frame = -2 / -1
Query: 91 CFLALC 74
CFL +C
Sbjct: 288 CFLQVC 271
>dbj|BB488472.2|BB488472 BB488472 RIKEN full-length enriched, 13 days embryo lung Mus
musculus cDNA clone D430050F21 3'.
Length = 651
Score = 25.3 bits (49), Expect(2) = 5.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 81 HSVIMFFMPILL*YWQC 31
HS+++FF +LL Y+ C
Sbjct: 162 HSLLIFFCSLLLCYFHC 212
Score = 23.1 bits (44), Expect(2) = 5.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2 / +1
Query: 187 GFQLESLITVCLFCYY 140
G + ES + VC+ CY+
Sbjct: 103 GIKTESNVLVCIGCYW 150
>gb|AA513357.1|AA513357 ne58h07.s1 NCI_CGAP_Co3 Homo sapiens cDNA clone IMAGE:901597 3'.
Length = 372
Score = 28.1 bits (55), Expect(2) = 5.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +3
Query: 98 HAMFSCTLLLCSSCQYYFNTGNV 30
HA+F+ LL+ SS Y NTG V
Sbjct: 39 HALFASILLISSSICYAVNTGYV 107
Score = 19.4 bits (36), Expect(2) = 5.2
Identities = 3/13 (23%), Positives = 9/13 (69%)
Frame = -3 / +1
Query: 126 VMLMDRCLPSCHV 88
+ ++ +C+P H+
Sbjct: 19 LFILAKCMPCLHL 57
>gb|BI083709.1|BI083709 602874894F2 NCI_CGAP_Mam2 Mus musculus cDNA clone IMAGE:5006735 5'.
Length = 947
Score = 27.2 bits (53), Expect(2) = 5.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1 / -1
Query: 116 WIGVYRHAMFSCTLLLCSSCQYY 48
W+ V ++F C L+LC C ++
Sbjct: 893 WVCVLLVSVFLCVLVLCRFCSFW 825
Score = 21.7 bits (41), Expect(2) = 5.3
Identities = 6/14 (42%), Positives = 10/14 (70%)
Frame = -2 / -2
Query: 151 FCYYGRYFGYAYGS 110
FC+ R+FG+ + S
Sbjct: 916 FCFLCRFFGFVFFS 875
>dbj|BB772028.1|BB772028 BB772028 RIKEN full-length enriched, B16 F10Y cells Mus musculus
cDNA clone G370139I02 3'.
Length = 525
Score = 33.1 bits (66), Expect = 5.4
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = +2 / -3
Query: 71 ITECKKTWHDGKHRSISITEIPTVVAKQTNSY*RFKLKTNA 193
I + TW GKH + T++P K TN+ *+ LK+N+
Sbjct: 289 ILKVSLTWSYGKHNITAGTKLPVFS*KHTNNI*QDSLKSNS 167
>gb|BG331883.1|BG331883 602433031F1 NIH_MGC_18 Homo sapiens cDNA clone IMAGE:4550958 5'.
Length = 955
Score = 33.1 bits (66), Expect = 5.4
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -1 / -3
Query: 92 MFSCTLLLCSSCQYYF 45
+FSC LLCSSC ++F
Sbjct: 878 LFSCVCLLCSSCSFFF 831
>gb|AW850488.1|AW850488 IL3-CT0219-280100-061-F12 CT0219 Homo sapiens cDNA.
Length = 512
Score = 33.1 bits (66), Expect = 5.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3 / +3
Query: 147 ATTVGISVMLMDRCLPSCHVFLHSVIM 67
ATT G ++L+ RCLP C L S+++
Sbjct: 291 ATTPGRKLVLLTRCLPECRTKLRSLLL 371
>gb|BI256265.1|BI256265 602975090F1 NIH_MGC_12 Homo sapiens cDNA clone IMAGE:5114086 5'.
Length = 1120
Score = 33.1 bits (66), Expect = 5.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2 / -1
Query: 160 VCLFCYYGRYFGYAYGSVFTVMPCFLALCYYVLHANITLILAMF 29
VC FC + +F + + + F + CFL L ++ +++ +F
Sbjct: 640 VCFFCLFFAFFFFCFFTSFFYLFCFLLLFLFMFFCFFLVVILVF 509
>gb|BI786478.1|BI786478 sai49e10.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE
ID: Gm-c1065-6739 5' similar to TR:Q9SQP2 Q9SQP2
F19K16.21 PROTEIN. ;.
Length = 549
Score = 33.1 bits (66), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -1 / -2
Query: 116 WIGVYRHAMFSCTLLLCSSCQYYF 45
W+ + H+ SC +LLC S Q Y+
Sbjct: 524 WVSCFSHSKDSCLILLCFSSQIYY 453
>gb|BG352918.1|BG352918 sab93a09.y1 Gm-c1040 Glycine max cDNA clone GENOME SYSTEMS CLONE
ID: Gm-c1040-2346 5' similar to TR:Q9SQP2 Q9SQP2
F19K16.21 PROTEIN. ;.
Length = 569
Score = 33.1 bits (66), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -1 / -3
Query: 116 WIGVYRHAMFSCTLLLCSSCQYYF 45
W+ + H+ SC +LLC S Q Y+
Sbjct: 435 WVSCFSHSKDSCLILLCFSSQIYY 364
>gb|BM177132.1|BM177132 saj77c01.y1 Gm-c1074 Glycine max cDNA clone SOYBEAN CLONE ID:
Gm-c1074-2426 5' similar to TR:Q9SQP2 Q9SQP2 F19K16.21
PROTEIN. ;.
Length = 508
Score = 33.1 bits (66), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -1 / -3
Query: 116 WIGVYRHAMFSCTLLLCSSCQYYF 45
W+ + H+ SC +LLC S Q Y+
Sbjct: 374 WVSCFSHSKDSCLILLCFSSQIYY 303
>emb|AL576451.1|AL576451 AL576451 LTI_NFL006_PL2 Homo sapiens cDNA clone CS0DI075YG20 3
prime.
Length = 1023
Score = 33.1 bits (66), Expect = 5.4
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -3 / +2
Query: 141 TVGISVMLMDRCLPSCHVFLHSVIMFFMPILL 46
T+ ISV+L D PSC +FL S + F +LL
Sbjct: 713 TLLISVLLQDYMTPSCWLFLQSKLSFQWQVLL 808
>dbj|AV655892.1|AV655892 AV655892 GLC Homo sapiens cDNA clone GLCELF04 3'.
Length = 647
Score = 33.1 bits (66), Expect = 5.4
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -3 / -1
Query: 141 TVGISVMLMDRCLPSCHVFLHSVIMFFMPILL 46
T+ ISV+L D PSC +FL S + F +LL
Sbjct: 476 TLLISVLLQDYMTPSCWLFLQSKLSFQWQVLL 381
>dbj|BB266133.1|BB266133 BB266133 RIKEN full-length enriched, 10 days neonate cortex Mus
musculus cDNA clone A830023L20 3' similar to L34290 Mus
musculus guanine nucleotide regulatory protein mRNA.
Length = 290
Score = 33.1 bits (66), Expect = 5.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2 / +3
Query: 157 CLFCYYGRYFGYAYGSVFTVMPCFLALCYYVLHANITLILA 35
CLF Y + + + ++ V PCFL + H + L LA
Sbjct: 6 CLFSSYSTQWNFTFITISNVPPCFLGSSLFSEHFQLYLFLA 128
>gb|H16637.1|H16637 ym26e06.r1 Soares infant brain 1NIB Homo sapiens cDNA clone
IMAGE:49164 5' similar to gb:M73255_rna1 VASCULAR CELL
ADHESION PROTEIN 1 PRECURSOR (HUMAN);.
Length = 508
Score = 33.1 bits (66), Expect = 5.4
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -3 / -2
Query: 141 TVGISVMLMDRCLPSCHVFLHSVIMFFMPILL 46
T+ ISV+L D PSC +FL S + F +LL
Sbjct: 264 TLLISVLLQDYMTPSCWLFLQSKLSFQWQVLL 169
>gb|BE346748.1|BE346748 sp29g02.y1 Gm-c1042 Glycine max cDNA clone GENOME SYSTEMS CLONE ID:
Gm-c1042-1995 5'.
Length = 480
Score = 33.1 bits (66), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -1 / +2
Query: 116 WIGVYRHAMFSCTLLLCSSCQYYF 45
W+ + H+ SC +LLC S Q Y+
Sbjct: 71 WVSCFSHSKDSCLILLCFSSQIYY 142
>gb|BI048021.1|BI048021 PM2-ST0303-140301-009-e05 ST0303 Homo sapiens cDNA.
Length = 366
Score = 33.1 bits (66), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3 / -1
Query: 81 HSVIMFFMPILL*YWQCLVVVPRPRP 4
H +FMP+L YWQC+ ++ P P
Sbjct: 348 HCFPEWFMPVLQFYWQCMKILVVPHP 271
>gb|BF034625.1|BF034625 601455056F1 NIH_MGC_66 Homo sapiens cDNA clone IMAGE:3859044 5'.
Length = 1203
Score = 29.0 bits (57), Expect(2) = 5.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2 / -3
Query: 202 SCRSIGFQLESLITVCLFC 146
SCR + F+L S++ +CL C
Sbjct: 1006 SCRCVLFRLRSMVALCLSC 950
Score = 21.2 bits (40), Expect(2) = 5.4
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1 / -3
Query: 56 QYYFNTGNVW* 24
+YY NT ++W*
Sbjct: 478 KYYLNTHHIW* 446
>gb|BE613718.1|BE613718 601504520F1 NIH_MGC_71 Homo sapiens cDNA clone IMAGE:3906100 5'.
Length = 971
Score = 25.8 bits (50), Expect(2) = 5.4
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2 / -2
Query: 148 CYYGRYFGYAYGSVFTVMPCFLALCYYVLHANITLILAMFG 26
C+ + + SVF + CF A C A + L A G
Sbjct: 382 CFTSSVLLFVH*SVFRLSLCFAACCVRTAFALLLLYCASLG 260
Score = 23.1 bits (44), Expect(2) = 5.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2 / -1
Query: 199 CRSIGFQLESLITVCLF 149
C +GF L SL+ LF
Sbjct: 665 CCFVGFLLASLLCCPLF 615
>emb|AL723159.1|AL723159 AL723159 Danio rerio embryonic inner ear subtracted cDNA Danio
rerio cDNA clone BN0AA065ZE01 3'.
Length = 711
Score = 22.6 bits (43), Expect(3) = 5.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1 / +1
Query: 1 AWSRPRY 21
AWSRPRY
Sbjct: 4 AWSRPRY 24
Score = 21.7 bits (41), Expect(3) = 5.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +2 / +1
Query: 56 GMKNIITECKKTWHDGK 106
G + IT K W DGK
Sbjct: 487 GCQFFITCTKCDWLDGK 537
Score = 17.6 bits (32), Expect(3) = 5.5
Identities = 7/16 (43%), Positives = 10/16 (61%)
Frame = +1 / +1
Query: 112 IHKHNRNTDRSSKTNK 159
+HK +R SKTN+
Sbjct: 595 VHK*HRFQGSLSKTNR 642
>dbj|AU135153.1|AU135153 AU135153 PLACE1 Homo sapiens cDNA clone PLACE1001345 5'.
Length = 718
Score = 27.2 bits (53), Expect(2) = 5.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3 / -2
Query: 87 FLHSVIMFFMPILL*Y 40
+ H+V+MFF P+LL Y
Sbjct: 228 YCHAVLMFFSPLLLFY 181
Score = 21.2 bits (40), Expect(2) = 5.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3 / -3
Query: 111 RCLPSCHVFLHSVI 70
RCL H+F H V+
Sbjct: 584 RCLGRFHIFNHRVL 543
>gb|BG172311.1|BG172311 602333461F1 NCI_CGAP_Mam1 Mus musculus cDNA clone IMAGE:4456790 5'.
Length = 731
Score = 27.2 bits (53), Expect(3) = 5.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3 / -1
Query: 153 CFATTVGISVMLMDRC 106
CF T VGI V DRC
Sbjct: 527 CFCTCVGIHVRASDRC 480
Score = 17.6 bits (32), Expect(3) = 5.7
Identities = 9/26 (34%), Positives = 10/26 (37%)
Frame = -3 / -3
Query: 108 CLPSCHVFLHSVIMFFMPILL*YWQC 31
C +CH L SV LL C
Sbjct: 102 CSGACHPLLRSVRTTATAELLARSSC 25
Score = 17.1 bits (31), Expect(3) = 5.7
Identities = 5/10 (50%), Positives = 5/10 (50%)
Frame = -3 / -1
Query: 42 YWQCLVVVPR 13
YW L V P
Sbjct: 44 YWLDLPVCPM 15
>gb|BI604205.1|BI604205 603248553F1 NIH_MGC_96 Homo sapiens cDNA clone IMAGE:5300437 5'.
Length = 751
Score = 26.7 bits (52), Expect(2) = 5.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1 / +3
Query: 74 LLCSSCQYYFNTGNVW 27
LLC +C ++FNT W
Sbjct: 669 LLCCACVHFFNTWTDW 716
Score = 21.7 bits (41), Expect(2) = 5.8
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -3 / +1
Query: 114 DRCLPSCHVF 85
D CLP CH++
Sbjct: 355 DPCLPVCHLW 384
>gb|AI167410.1|AI167410 ox69g06.s1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:1661626
3'.
Length = 416
Score = 28.1 bits (55), Expect(2) = 5.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +3
Query: 98 HAMFSCTLLLCSSCQYYFNTGNV 30
HA+F+ LL+ SS Y NTG V
Sbjct: 39 HALFASILLISSSICYAVNTGYV 107
Score = 19.4 bits (36), Expect(2) = 5.9
Identities = 3/13 (23%), Positives = 9/13 (69%)
Frame = -3 / +1
Query: 126 VMLMDRCLPSCHV 88
+ ++ +C+P H+
Sbjct: 19 LFILAKCMPCLHL 57
>dbj|AU138770.1|AU138770 AU138770 PLACE1 Homo sapiens cDNA clone PLACE1009249 5'.
Length = 767
Score = 27.2 bits (53), Expect(2) = 5.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3 / -3
Query: 87 FLHSVIMFFMPILL*Y 40
+ H+V+MFF P+LL Y
Sbjct: 255 YCHAVLMFFSPLLLFY 208
Score = 21.2 bits (40), Expect(2) = 5.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3 / -2
Query: 111 RCLPSCHVFLHSVI 70
RCL H+F H V+
Sbjct: 610 RCLGRFHIFNHRVL 569
>gb|BG922890.1|BG922890 602817470F1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:4946464 5'.
Length = 777
Score = 24.9 bits (48), Expect(2) = 6.0
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2 / -1
Query: 151 FCYYGRYFGYAYGSVFTVMPCFLAL 77
FC G + G+ VF PC L L
Sbjct: 591 FCLRGSFCGWGTVFVFPCSPCSLVL 517
Score = 23.5 bits (45), Expect(2) = 6.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2 / -3
Query: 100 VMPCFLALCYYVLHANITL 44
V CFL LC++V + L
Sbjct: 436 VWVCFLLLCFFVASQGLVL 380
>gb|BM974034.1|BM974034 UI-CF-EC1-abz-m-10-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone
UI-CF-EC1-abz-m-10-0-UI 3'.
Length = 577
Score = 27.2 bits (53), Expect(2) = 6.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2 / +3
Query: 17 GTTTKHCQY*SNIGMKNIITECKKTWHDGK 106
G++ +H Y N K+ +T K+WH GK
Sbjct: 141 GSSPQHSIYTQN*TDKHRVTIAVKSWHHGK 230
Score = 20.8 bits (39), Expect(2) = 6.0
Identities = 7/8 (87%), Positives = 8/8 (99%)
Frame = +2 / +3
Query: 2 RGRGRGTT 25
RGRGRGT+
Sbjct: 105 RGRGRGTS 128
>gb|AW731657.1|AW731657 ba56e10.x1 NIH_MGC_10 Homo sapiens cDNA clone IMAGE:2900586 3'.
Length = 433
Score = 28.1 bits (55), Expect(2) = 6.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +2
Query: 98 HAMFSCTLLLCSSCQYYFNTGNV 30
HA+F+ LL+ SS Y NTG V
Sbjct: 50 HALFASILLISSSICYAVNTGYV 118
Score = 19.4 bits (36), Expect(2) = 6.1
Identities = 3/13 (23%), Positives = 9/13 (69%)
Frame = -3 / +3
Query: 126 VMLMDRCLPSCHV 88
+ ++ +C+P H+
Sbjct: 30 LFILAKCMPCLHL 68
>gb|BM796145.1|BM796145 K-EST0078791 S22SNU16n1 Homo sapiens cDNA clone S22SNU16n1-53-F03
5'.
Length = 437
Score = 28.1 bits (55), Expect(2) = 6.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / -3
Query: 98 HAMFSCTLLLCSSCQYYFNTGNV 30
HA+F+ LL+ SS Y NTG V
Sbjct: 381 HALFASILLISSSICYAVNTGYV 313
Score = 19.4 bits (36), Expect(2) = 6.2
Identities = 3/13 (23%), Positives = 9/13 (69%)
Frame = -3 / -1
Query: 126 VMLMDRCLPSCHV 88
+ ++ +C+P H+
Sbjct: 401 LFILAKCMPCLHL 363
>gb|AA947847.1|AA947847 ok21e12.s1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone
IMAGE:1508494 3'.
Length = 441
Score = 28.1 bits (55), Expect(2) = 6.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +2
Query: 98 HAMFSCTLLLCSSCQYYFNTGNV 30
HA+F+ LL+ SS Y NTG V
Sbjct: 44 HALFASILLISSSICYAVNTGYV 112
Score = 19.4 bits (36), Expect(2) = 6.2
Identities = 3/13 (23%), Positives = 9/13 (69%)
Frame = -3 / +3
Query: 126 VMLMDRCLPSCHV 88
+ ++ +C+P H+
Sbjct: 24 LFILAKCMPCLHL 62
>gb|AI373132.1|AI373132 qz98f06.x1 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone
IMAGE:2042627 3'.
Length = 449
Score = 28.1 bits (55), Expect(2) = 6.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +2
Query: 98 HAMFSCTLLLCSSCQYYFNTGNV 30
HA+F+ LL+ SS Y NTG V
Sbjct: 35 HALFASILLISSSICYAVNTGYV 103
Score = 19.4 bits (36), Expect(2) = 6.3
Identities = 3/13 (23%), Positives = 9/13 (69%)
Frame = -3 / +3
Query: 126 VMLMDRCLPSCHV 88
+ ++ +C+P H+
Sbjct: 15 LFILAKCMPCLHL 53
>gb|AI377095.1|AI377095 tc16d09.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:2064017
3'.
Length = 450
Score = 28.1 bits (55), Expect(2) = 6.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / +2
Query: 98 HAMFSCTLLLCSSCQYYFNTGNV 30
HA+F+ LL+ SS Y NTG V
Sbjct: 35 HALFASILLISSSICYAVNTGYV 103
Score = 19.4 bits (36), Expect(2) = 6.4
Identities = 3/13 (23%), Positives = 9/13 (69%)
Frame = -3 / +3
Query: 126 VMLMDRCLPSCHV 88
+ ++ +C+P H+
Sbjct: 15 LFILAKCMPCLHL 53
>gb|BI858314.1|BI858314 603384088F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE:5393133 5'.
Length = 841
Score = 27.2 bits (53), Expect(2) = 6.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3 / -3
Query: 87 FLHSVIMFFMPILL*Y 40
+ H+V+MFF P+LL Y
Sbjct: 137 YCHAVLMFFSPLLLFY 90
Score = 21.2 bits (40), Expect(2) = 6.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3 / -1
Query: 111 RCLPSCHVFLHSVI 70
RCL H+F H V+
Sbjct: 493 RCLGRFHIFNHRVL 452
>gb|BQ137247.1|BQ137247 NF106H07ST1F1063 Developing stem Medicago truncatula cDNA clone
NF106H07ST 5'.
Length = 1166
Score = 24.4 bits (47), Expect(2) = 6.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3 / -2
Query: 102 PSCHVFLHSVIMFFMPIL 49
PSC + L ++FF P+L
Sbjct: 481 PSCPILLVCFLLFFPPLL 428
Score = 24.4 bits (47), Expect(2) = 6.5
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2 / -2
Query: 196 RSIGFQLESLITVCLFC 146
R +G+ S + +CLFC
Sbjct: 1159 RLVGYACRSCVLLCLFC 1109
>gb|BF183477.1|BF183477 601809949R1 NIH_MGC_18 Homo sapiens cDNA clone IMAGE:4040364 3'.
Length = 1823
Score = 29.9 bits (59), Expect(2) = 6.5
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = -2 / -3
Query: 157 CLFCYYGRYFGYAYGSVFTVMPCFLAL 77
C+F Y YFG++ VF V+ C L L
Sbjct: 1524 CVFIIYFCYFGFSLVVVFFVIVCVLGL 1444
Score = 20.3 bits (38), Expect(2) = 6.5
Identities = 4/7 (57%), Positives = 5/7 (71%)
Frame = -2 / -2
Query: 91 CFLALCY 71
CFL C+
Sbjct: 1423 CFLCFCF 1403
Database: Database of GenBank+EMBL+DDBJ sequences from EST Divisions
Posted date: May 12, 2002 6:20 AM
Number of letters in database: 1,220,047,589
Number of sequences in database: 11,552,259
Lambda K H
0.318 0.135 0.00
Matrix: BLOSUM62
Number of Hits to DB: 3,256,584,000
Number of Sequences: 11552259
Number of extensions: 36096994
Number of successful extensions: 4613367
Number of sequences better than 10.0: 191
length of database: 1,838,338,295
effective HSP length: 54
effective length of database: 1,214,516,309
effective search space used: 25504842489
frameshift window, decay const: 50, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)