The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_B08_T7.seq Fgr-S3_1_B08_T7 LENGTH:507bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_B08 ; CLONELIB: n/a
(507 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL75982.1|AF466203_11 (AF466203) putative prpol [Zea mays] 166 7e-41
gb|AAK73121.2|AF391808_31 (AF391808) RIRE gag/pol protein [... 164 3e-40
gb|AAL75983.1|AF466203_12 (AF466203) putative gag-pol precu... 161 2e-39
gb|AAK26119.1|AC084406_2 (AC084406) putative gag-pol precur... 157 4e-38
dbj|BAB90479.1| (AP003725) hypothetical protein~similar to ... 155 2e-37
dbj|BAB63721.1| (AP003294) hypothetical protein [Oryza sati... 154 3e-37
dbj|BAB32716.1| (AP002902) putative polyprotein [Oryza sati... 154 4e-37
gb|AAL31648.1|AC079179_3 (AC079179) Putative polyprotein [O... 154 4e-37
gb|AAL58269.1|AC068923_11 (AC068923) putative gypsy-type re... 154 4e-37
gb|AAK55774.1|AC079038_8 (AC079038) Putative polyprotein [O... 154 5e-37
dbj|BAB85396.1| (AP003924) hypothetical protein [Oryza sati... 154 5e-37
dbj|BAB89075.1| (AP003372) putative polyprotein [Oryza sati... 154 5e-37
dbj|BAB78622.1| (AP002845) putative GAG-POL precursor [Oryz... 154 5e-37
dbj|BAB17135.1| (AP002867) putative polyprotein [Oryza sati... 154 5e-37
dbj|BAB85442.1| (AP004031) putative polyprotein [Oryza sati... 154 5e-37
dbj|BAB85403.1| (AP003924) putative polyprotein [Oryza sati... 154 5e-37
dbj|BAB21213.1| (AP002913) putative polyprotein [Oryza sati... 154 5e-37
dbj|BAB85272.1| (AP003291) putative polyprotein [Oryza sati... 154 5e-37
dbj|BAB39285.1| (AP002971) putative polyprotein [Oryza sati... 154 5e-37
dbj|BAB64681.1| (AP003296) hypothetical protein~similar to ... 154 5e-37
gb|AAL82696.1|AC091122_22 (AC091122) putative GAG-POL precu... 154 5e-37
dbj|BAB19334.1| (AP003044) putative polyprotein [Oryza sati... 154 5e-37
dbj|BAB40166.1| (AP002910) hypothetical protein~similar to ... 154 5e-37
gb|AAK55777.1|AC079038_11 (AC079038) Putative polyprotein [... 153 6e-37
dbj|BAB63891.1| (AP003852) putative GAG-POL precursor [Oryz... 153 8e-37
dbj|BAB91733.1| (AP003284) hypothetical protein~similar to ... 152 1e-36
gb|AAL58969.1|AC091811_18 (AC091811) putative gag-pol precu... 150 4e-36
gb|AAK16189.1|AC079887_21 (AC079887) putative polyprotein ... 150 5e-36
dbj|BAB55748.1| (AP003140) putative GAG-POL precursor [Oryz... 149 1e-35
gb|AAK92547.1|AC051624_5 (AC051624) Putative retroelement [... 148 3e-35
gb|AAK27822.1|AC022457_25 (AC022457) putative gag-pol precu... 147 4e-35
gb|AAM00949.1|AC021892_13 (AC021892) Putative retroelement ... 147 5e-35
dbj|BAA84458.1| (AB030283) GAG-POL precursor [Oryza sativa ... 147 6e-35
dbj|BAA92417.1| (AP001366) Similar to Sorghum bicolor Gypsy... 147 6e-35
gb|AAK53857.1|AC016781_11 (AC016781) Putative retroelement ... 146 1e-34
gb|AAM19013.1|AC084748_3 (AC084748) putative gag-pol precur... 146 1e-34
gb|AAL67586.1|AC018929_8 (AC018929) putative GAG-POL precur... 144 3e-34
dbj|BAB90647.1| (AP003933) putative GAG-POL precursor [Oryz... 144 4e-34
gb|AAK43497.1|AC020666_7 (AC020666) gag-pol precursor [Oryz... 144 4e-34
gb|AAM00991.1|AC090482_20 (AC090482) Putative retroelement ... 144 4e-34
dbj|BAA99536.1| (AP002484) putative gypsy-type retrotranspo... 144 5e-34
dbj|BAB03352.1| (AP002486) Similar to Oryza sativa gypsy-ty... 144 5e-34
gb|AAD27548.1|AF111709_2 (AF111709) polyprotein [Oryza sati... 143 7e-34
gb|AAL82662.1|AC092387_10 (AC092387) putative GAG-POL precu... 143 9e-34
gb|AAL58229.1|AC084762_3 (AC084762) putative gag-pol precur... 141 3e-33
gb|AAK72284.1|AC084767_24 (AC084767) putative gag-pol prote... 138 2e-32
dbj|BAA84632.1| (AP000492) ESTs C26347(C12145),AU078074(C12... 138 3e-32
gb|AAL66751.1|AF464738_2 (AF464738) putative gag-pol precur... 137 5e-32
gb|AAK70625.1|AC091238_3 (AC091238) Putative gag-pol precur... 137 6e-32
gb|AAM08527.1|AC068654_29 (AC068654) putative retroelement ... 135 1e-31
dbj|BAB61228.1| (AP003257) hypothetical protein~similar to ... 130 8e-30
gb|AAM14683.1|AC097446_12 (AC097446) Putative polyprotein [... 129 1e-29
gb|AAM22011.1|AC093178_6 (AC093178) Putative gag-pol precur... 127 5e-29
gb|AAK50597.1|AC084404_22 (AC084404) putative gag-pol precu... 124 4e-28
gb|AAM08617.1|AC107314_8 (AC107314) Putative retroelement [... 122 1e-27
dbj|BAB64574.1| (AP003205) hypothetical protein~similar to ... 117 7e-26
dbj|BAA87844.1| (AP000815) EST C72786(E2258) corresponds to... 113 1e-24
gb|AAK52121.1|AC079936_17 (AC079936) Putative retroelement ... 105 3e-22
gb|AAK71558.1|AC087852_18 (AC087852) putative gag-pol prote... 103 8e-22
gb|AAG50898.1|AC068901_7 (AC068901) hypothetical protein [A... 102 1e-21
ref|NP_174882.1| (NM_103345) hypothetical protein [Arabidop... 102 1e-21
gb|AAD19359.1| (AF098806) polyprotein [Sorghum bicolor] >gi... 102 2e-21
gb|AAM18978.1|AC098694_9 (AC098694) Putative gag-pol precur... 102 2e-21
dbj|BAB90375.1| (AP003561) putative polyprotein [Oryza sati... 100 9e-21
ref|NP_179143.1| (NM_127101) putative retroelement pol poly... 100 1e-20
ref|NP_179114.1| (NM_127072) putative retroelement pol poly... 98 3e-20
gb|AAL76007.1|AF466646_15 (AF466646) prpol [Zea mays] 97 6e-20
ref|NP_063998.1| (NC_002511) orf764 [Beta vulgaris] >gi|904... 97 7e-20
gb|AAL86511.1|AC099040_15 (AC099040) putative polyprotein [... 97 9e-20
ref|NP_179047.1| (NM_127004) putative retroelement pol poly... 96 1e-19
gb|AAL75988.1|AF466204_3 (AF466204) putative GAG-POL precur... 96 1e-19
emb|CAC33017.1| (AJ300474) hypothetical protein [Antirrhinu... 96 2e-19
gb|AAL31077.1|AC091749_6 (AC091749) putative polyprotein [O... 96 2e-19
ref|NP_173464.1| (NM_101890) hypothetical protein [Arabidop... 94 8e-19
gb|AAF79618.1|AC027665_19 (AC027665) F5M15.26 [Arabidopsis ... 94 8e-19
pir||T14595 polyprotein - maize retrotransposon Cinful-1 >g... 93 1e-18
gb|AAL66757.1|AF464738_8 (AF464738) putative prpol [Zea mays] 91 5e-18
gb|AAL93083.1|AC093180_30 (AC093180) putative polyprotein [... 90 9e-18
gb|AAL58173.1|AC093181_19 (AC093181) putative polyprotein [... 89 2e-17
gb|AAK51571.1|AC022352_7 (AC022352) Putative retroelement [... 87 6e-17
gb|AAL68846.1|AF466199_5 (AF466199) putative GAG-POL precur... 76 1e-13
gb|AAF03460.1|AC009992_2 (AC009992) putative reverse transc... 72 2e-12
dbj|BAA92505.1| (AP001383) Similar to prpol. (AF049110) [Or... 66 1e-10
gb|AAM01123.1|AC108884_5 (AC108884) Putative retroelement [... 66 2e-10
gb|AAK50400.1|AC021891_1 (AC021891) Putative retroelement [... 66 2e-10
gb|AAL75478.1|AF466202_4 (AF466202) putative prpol [Zea mays] 65 4e-10
dbj|BAA96774.2| (AP002521) Similar to Arabidopsis thaliana ... 63 1e-09
gb|AAK92670.1|AC090714_3 (AC090714) putative gag-pol precur... 63 1e-09
ref|NP_178959.1| (NM_126915) putative retroelement pol poly... 62 2e-09
gb|AAG59655.1|AC084319_13 (AC084319) putative gypsy-type re... 62 2e-09
gb|AAM08509.1|AC068654_11 (AC068654) Putative retroelement ... 62 3e-09
gb|AAM01055.1|AC091735_28 (AC091735) putative pol polyprote... 61 4e-09
gb|AAL91598.1|AC099400_4 (AC099400) Putative gag-pol precur... 59 2e-08
gb|AAG46176.1|AC018727_28 (AC018727) putative gypsy-type re... 59 3e-08
dbj|BAB39950.1| (AP003018) putative polyprotein [Oryza sati... 58 4e-08
emb|CAC34731.1| (AJ310725) hypothetical protein [Yarrowia l... 57 6e-08
gb|AAM08865.1|AC113339_11 (AC113339) Putative retroelement ... 57 8e-08
gb|AAM08857.1|AC113339_3 (AC113339) Putative retroelement [... 57 8e-08
ref|NP_054716.1| (NC_002201) Pol [equine foamy virus] >gi|7... 57 1e-07
gb|AAK52152.1|AC084831_6 (AC084831) putative gag-pol polypr... 57 1e-07
gb|AAM08799.1|AC090486_9 (AC090486) Putative retroelement [... 57 1e-07
dbj|BAB10790.1| (AB028613) retroelement pol polyprotein-lik... 55 2e-07
ref|NP_178952.1| (NM_126908) putative retroelement pol poly... 55 3e-07
gb|AAL77160.1|AC091732_11 (AC091732) Putative polyprotein [... 55 3e-07
ref|NP_174966.1| (NM_103426) polyprotein, putative [Arabido... 55 3e-07
gb|AAM14682.1|AC097446_11 (AC097446) Putative retrotranspos... 55 3e-07
gb|AAM14675.1|AC097446_4 (AC097446) Putative retrotransposo... 55 3e-07
gb|AAF24529.1|AC007534_10 (AC007534) F7F22.15 [Arabidopsis ... 55 3e-07
ref|NP_044929.1| (NC_001831) pol polyprotein [bovine syncyt... 54 5e-07
dbj|BAB02630.1| (AP002054) retroelement pol polyprotein-lik... 54 9e-07
gb|AAG37039.1|AF298204_1 (AF298204) polyprotein [Dictyostel... 54 9e-07
gb|AAM22019.1|AC093178_14 (AC093178) Putative polyprotein [... 53 1e-06
gb|AAF24531.1|AC007534_12 (AC007534) F7F22.17 [Arabidopsis ... 53 1e-06
dbj|BAB86420.1| (AP003221) putative retrotransposon polypro... 53 2e-06
ref|NP_500013.1| (NM_067612) F58H7.6.p [Caenorhabditis eleg... 53 2e-06
dbj|BAB02143.1| (AP000411) retroelement pol polyprotein-lik... 52 3e-06
gb|AAK92584.1|AC074354_18 (AC074354) Putative retroelement ... 52 3e-06
pir||S52564 hypothetical protein 2 (clone Db314) - fruit fl... 52 3e-06
gb|AAC33526.2| (AF030881) pol polyprotein [Takifugu rubripes] 51 5e-06
gb|AAK52540.2|AC078891_9 (AC078891) Putative retroelement p... 51 5e-06
gb|AAK52140.1|AC084380_13 (AC084380) putative gag-pol polyp... 51 6e-06
gb|AAK72282.1|AC084767_22 (AC084767) putative gag-pol prote... 50 1e-05
gb|AAK53848.1|AC016781_2 (AC016781) Putative retroelement [... 50 1e-05
gb|AAL73570.1|AC079632_14 (AC079632) Putative polyprotein [... 50 1e-05
pir||S47444 probable integrase - common tobacco (fragment) ... 49 2e-05
dbj|BAB83836.1| (AB073376) LTR retrotransposable element~pa... 49 2e-05
emb|CAB39733.1| (AJ133521) protease, reverse transcriptase,... 49 2e-05
sp|P23074|POL_SFV1 POL polyprotein [Contains: Protease ; Re... 49 3e-05
gb|AAL76190.1|AC092173_2 (AC092173) Putative gag-pol polypr... 49 3e-05
sp|P27401|POL_SFV3L POL polyprotein [Contains: Protease ; R... 49 3e-05
gb|AAM01045.1|AC091735_18 (AC091735) Putative retroelement ... 48 4e-05
gb|AAC78249.1| (M77194) polymerase [Rat leukemia virus] 48 4e-05
ref|NP_056803.1| (NC_001364) pol polyprotein [Simian foamy ... 48 5e-05
gb|AAM01069.1|AC092748_7 (AC092748) Putative retroelement [... 48 5e-05
gb|AAA35184.1| (M23367) has homology to retroviral pol gene... 47 1e-04
ref|NP_192527.1| (NM_116857) putative polyprotein [Arabidop... 47 1e-04
emb|CAA86713.1| (Z46728) YI9910.15, incomplete TY3-2 orfB, ... 47 1e-04
ref|NP_012184.1| (NC_001141) Hypothetical ORF; Yil082w-ap [... 47 1e-04
pir||S53577 TyB protein - yeast (Saccharomyces cerevisiae) ... 47 1e-04
gb|AAL77162.1|AC091732_13 (AC091732) Putative polyprotein [... 46 2e-04
gb|AAA98435.1| (M34549) POL3 [Saccharomyces cerevisiae] 46 2e-04
gb|AAL83634.1|AC093017_18 (AC093017) putative polyprotein [... 46 2e-04
gb|AAK52160.1|AC084831_14 (AC084831) putative polyprotein [... 46 2e-04
ref|NP_178679.1| (NM_126637) putative retroelement pol poly... 46 2e-04
dbj|BAB85443.1| (AP004031) similar to polyprotein [Oryza sa... 46 2e-04
dbj|BAB90703.1| (AP004232) putative Sorghum bicolor 22 kDa ... 46 2e-04
dbj|BAA95869.1| (AP002071) Similar to Sorghum bicolor 22 kD... 46 2e-04
gb|AAL31078.1|AC091749_7 (AC091749) putative polyprotein [O... 46 2e-04
dbj|BAB62635.1| (AP003610) putative polyprotein [Oryza sati... 46 2e-04
gb|AAL86492.1|AC077693_31 (AC077693) putative polyprotein [... 46 2e-04
emb|CAA97115.1| (Z72894) TY3B [Saccharomyces cerevisiae] >g... 46 2e-04
pir||S69842 TyB protein - yeast (Saccharomyces cerevisiae) ... 46 2e-04
ref|NP_011624.1| (NC_001139) TyB Gag-Pol protein; Ygr109w-b... 46 2e-04
gb|AAM19047.1|AC099774_9 (AC099774) putative retrotransposo... 46 2e-04
dbj|BAB17336.1| (AP002747) putative polyprotein [Oryza sati... 45 2e-04
ref|NP_174913.1| (NM_103369) unknown protein [Arabidopsis t... 45 2e-04
sp|P14350|POL_FOAMV POL polyprotein [Contains: Reverse tran... 45 3e-04
gb|AAM08795.1|AC090486_5 (AC090486) Putative retroelement [... 45 3e-04
gb|AAA46122.1| (M54978) pol protein [Human spumaretrovirus] 45 3e-04
ref|NP_044280.1| (NC_001736) pol polyprotein [Human foamy v... 45 3e-04
dbj|BAB86165.1| (AP003537) putative polyprotein [Oryza sati... 45 3e-04
gb|AAD27547.1|AF111709_1 (AF111709) polyprotein [Oryza sati... 45 3e-04
gb|AAM01065.1|AC092748_3 (AC092748) Putative retroelement [... 45 3e-04
gb|AAK52162.1|AC084831_16 (AC084831) putative polyprotein [... 45 4e-04
gb|AAM01095.1|AC092748_33 (AC092748) Putative retroelement ... 45 4e-04
ref|NP_047255.1| (NC_001940) gag-pol precursor polyprotein ... 45 4e-04
gb|AAL78107.1|AC093568_17 (AC093568) Putative polyprotein [... 45 4e-04
gb|AAM01143.1|AC108884_25 (AC108884) Putative retroelement ... 45 4e-04
gb|AAM14686.1|AC097446_15 (AC097446) Putative polyprotein [... 45 4e-04
ref|NP_174896.1| (NM_103359) Athila retroelment ORF 1, puta... 45 4e-04
gb|AAM14672.1|AC097446_1 (AC097446) Putative polyprotein [O... 45 4e-04
dbj|BAB63638.1| (AP003263) putative polyprotein [Oryza sati... 45 4e-04
gb|AAK92560.1|AC051624_18 (AC051624) Putative retroelement ... 45 4e-04
gb|AAM14679.1|AC097446_8 (AC097446) Putative polyprotein [O... 44 6e-04
gb|AAK92676.1|AC090714_9 (AC090714) putative polyprotein [O... 44 6e-04
gb|AAL83344.1|AC074282_11 (AC074282) Putative polyprotein [... 44 6e-04
dbj|BAB84467.1| (AP003546) putative polyprotein [Oryza sati... 44 6e-04
gb|AAK92543.1|AC051624_1 (AC051624) Putative retroelement [... 44 6e-04
pir||T10532 gag-pol polyprotein precursor - feline leukemia... 44 6e-04
gb|AAK13123.1|AC080019_15 (AC080019) Similar to Transposon ... 44 6e-04
gb|AAM14695.1|AC097446_24 (AC097446) Putative polyprotein [... 44 6e-04
gb|AAL77161.1|AC091732_12 (AC091732) Putative polyprotein [... 44 6e-04
gb|AAL78097.1|AC093568_7 (AC093568) Putative polyprotein [O... 44 6e-04
dbj|BAB61255.1| (AP003315) putative polyprotein [Oryza sati... 44 6e-04
gb|AAL31081.1|AC091749_10 (AC091749) putative polyprotein [... 44 6e-04
dbj|BAB64173.1| (AP003254) putative polyprotein [Oryza sati... 44 6e-04
pir||T17429 gag-pol polyprotein - maize copia-like retrotra... 44 6e-04
gb|AAK13085.1|AC078839_1 (AC078839) Similar to Sorghum bico... 44 6e-04
gb|AAL59229.1|AF448416_9 (AF448416) gag-pol [Zea mays] 44 6e-04
gb|AAM01052.1|AC091735_25 (AC091735) Putative retroelement ... 44 7e-04
gb|AAL69429.1|AC098565_11 (AC098565) Putative polyprotein [... 44 7e-04
gb|AAK98731.1|AC090485_10 (AC090485) Putative retroelement ... 44 7e-04
gb|AAM22721.1|AC092388_5 (AC092388) putative polyprotein [O... 44 7e-04
gb|AAK51574.1|AC022352_10 (AC022352) Putative retroelement ... 44 7e-04
gb|AAM01156.1|AC113336_8 (AC113336) Putative retroelement [... 44 7e-04
gb|AAK13121.1|AC080019_13 (AC080019) Similar to Sorghum bic... 44 7e-04
gb|AAK13122.1|AC080019_14 (AC080019) Polyprotein [Oryza sat... 44 7e-04
dbj|BAB61226.1| (AP003257) putative polyprotein [Oryza sati... 44 7e-04
gb|AAK92588.1|AC074354_22 (AC074354) Putative retroelement ... 44 7e-04
gb|AAL86497.1|AC099040_1 (AC099040) putative polyprotein [O... 44 7e-04
gb|AAF79348.1|AC007887_7 (AC007887) F15O4.13 [Arabidopsis t... 44 7e-04
gb|AAK51585.1|AC022352_21 (AC022352) Putative retroelement ... 44 7e-04
ref|NP_174802.1| (NM_103266) polyprotein, putative [Arabido... 44 7e-04
gb|AAD12998.1| (AF082134) pol polyprotein [Zea mays] 44 7e-04
gb|AAK51580.1|AC022352_16 (AC022352) Putative retroelement ... 44 7e-04
gb|AAK91332.1|AC090441_14 (AC090441) Putative gag-pol polyp... 44 0.001
dbj|BAA89466.1| (AB033235) gag-pol polyprotein [Oryza sativ... 44 0.001
gb|AAL77157.1|AC091732_8 (AC091732) Putative polyprotein [O... 44 0.001
ref|NP_498958.1| (NM_066557) F44E2.2b.p [Caenorhabditis ele... 44 0.001
pir||T18572 gag, pol and env protein precursor - Caenorhabd... 44 0.001
ref|NP_498959.1| (NM_066558) Reverse Transcriptase [Caenorh... 44 0.001
dbj|BAB63791.1| (AP003607) putative retroelement pol polypr... 44 0.001
dbj|BAA22064.1| (D88386) gag-pol polyprotein (precursor pro... 43 0.001
pir||T17459 polyprotein - tomato >gi|4235644|gb|AAD13304.1|... 43 0.001
gb|AAK92599.1|AC078944_10 (AC078944) Putative retroelement ... 43 0.001
sp|P26810|POL_MLVF5 Pol polyprotein [Contains: Protease ; R... 43 0.001
sp|P26808|POL_MLVFP Pol polyprotein [Contains: Protease ; R... 43 0.001
ref|NP_044738.1| (NC_001819) Pol [Rauscher murine leukemia ... 43 0.001
ref|NP_040333.1| (NC_001362) RNA-dependent DNA polymerase [... 43 0.001
gb|AAC55819.1| (U51729) reverse transcriptase [Murine leuke... 43 0.002
gb|AAL69910.1|AF462057_3 (AF462057) Pr180 gag-pro-pol polyp... 43 0.002
gb|AAK51582.1|AC022352_18 (AC022352) Putative retroelement ... 43 0.002
sp|P08361|POL_MLVCB POL polyprotein [Contains: Reverse tran... 43 0.002
gb|AAM01019.1|AC090488_19 (AC090488) Putative retroelement ... 43 0.002
emb|CAC44142.1| (AJ411810) putative polyprotein [Cicer arie... 43 0.002
ref|NP_057933.1| (NC_001501) Pr180 [Murine leukemia virus] ... 43 0.002
prf||0711245A protein gag/pol/env [Moloney murine leukemia ... 43 0.002
gb|AAK94517.1| (AY040832) gag-pol polyprotein [Hordeum vulg... 43 0.002
gb|AAC58562.1| (U87552) integrase [Murine leukemia virus] 43 0.002
gb|AAC98548.1| (AF019230) pol polypeptide [Murine leukemia ... 43 0.002
sp|P34431|YL51_CAEEL Hypothetical protein F44E2.1 in chromo... 43 0.002
ref|NP_174769.1| (NM_103233) gypsy/Ty3 element polyprotein,... 43 0.002
sp|P03355|POL_MLVMO Pol polyprotein [Contains: Protease ; R... 43 0.002
pir||T18348 probable pol polyprotein, truncated - rice blas... 43 0.002
gb|AAB64160.1| (AF010170) Pol [synthetic construct] 43 0.002
pir||GNMV1M pol polyprotein - Moloney murine leukemia virus 43 0.002
gb|AAG25942.1| (AF291380) pol polyprotein [Simian foamy vir... 42 0.002
gb|AAG25954.1| (AF291404) pol polyprotein [Simian foamy virus] 42 0.002
gb|AAG25943.1| (AF291382) pol polyprotein [Simian foamy virus] 42 0.002
gb|AAG25941.1| (AF291379) pol polyprotein [Simian foamy virus] 42 0.002
gb|AAG25945.1| (AF291386) pol polyprotein [Simian foamy virus] 42 0.002
gb|AAG25950.1| (AF291396) pol polyprotein [Simian foamy virus] 42 0.002
dbj|BAA90795.1| (AP001168) Similar to 22 kDa kafirin cluste... 42 0.002
gb|AAK94516.1| (AY040832) gag-pol polyprotein [Hordeum vulg... 42 0.002
gb|AAK92597.1|AC078944_8 (AC078944) Putative retroelement [... 42 0.002
dbj|BAA78625.1| (AB028236) Pol (reverse transcriptase-RNase... 42 0.002
gb|AAG25949.1| (AF291394) pol polyprotein [Simian foamy virus] 42 0.003
gb|AAM01049.1|AC091735_22 (AC091735) putative polyprotein [... 42 0.003
gb|AAL77166.1|AC091732_17 (AC091732) Putative polyprotein [... 42 0.003
emb|CAD29542.1| (AJ439555) contains protease, reverse trans... 42 0.003
>gb|AAL75982.1|AF466203_11 (AF466203) putative prpol [Zea mays]
Length = 1854
Score = 166 bits (421), Expect = 7e-41
Identities = 78/148 (52%), Positives = 106/148 (70%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + +FCE HIR+D ++VAHP SNGQ ERAN IL+G+KPR+ L + W
Sbjct: 1703 GTQFTGKKFLDFCEDHHIRVDWAAVAHPMSNGQVERANGMILQGLKPRIYNDLNKFGKRW 1762
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
++ELPSV+WS+ TTP+R+TG+TPFF+VYGAEA+LP+D+ + SPR AY E N+ + +++
Sbjct: 1763 MKELPSVVWSLRTTPSRATGFTPFFLVYGAEAILPTDLEYGSPRARAYTEQSNQASREES 1822
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E RD A S YQQ LR YH+R
Sbjct: 1823 LDQLEEARDRALLHSARYQQSLRCYHAR 1850
>gb|AAK73121.2|AF391808_31 (AF391808) RIRE gag/pol protein [Zea mays]
Length = 290
Score = 164 bits (416), Expect = 3e-40
Identities = 77/148 (52%), Positives = 104/148 (70%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + +FCE HIR+D ++VAHP +NGQ ERAN IL+G+KPR+ L + W
Sbjct: 74 GTQFTGRKFLDFCEDRHIRVDWATVAHPMTNGQVERANDMILQGLKPRIYNDLNKFGKRW 133
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
++ELPSV+WS+ TTP+R+TG+TPFF+VYGAEA+LP+ + + SPR AY + N T +D+
Sbjct: 134 MKELPSVVWSLRTTPSRATGFTPFFLVYGAEAILPTYLEYSSPRARAYDDQSNRTNREDS 193
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E RD S YQQ LRRYH+R
Sbjct: 194 LDQLEEARDTTLLHSARYQQSLRRYHAR 221
>gb|AAL75983.1|AF466203_12 (AF466203) putative gag-pol precursor -orf2 [Zea mays]
Length = 1007
Score = 161 bits (408), Expect = 2e-39
Identities = 75/138 (54%), Positives = 103/138 (74%)
Frame = +2
Query: 47 EFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCWVEELPSVLWS 226
++ E HIR+D ++VAHP SNGQ ERAN IL+G+KPR+ L + W++ELPSV+WS
Sbjct: 801 KWIEDHHIRVDWAAVAHPMSNGQVERANGMILQGLKPRIYNDLNKFGKRWMKELPSVVWS 860
Query: 227 INTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDALDLLDEERDI 406
+ TTP+R+TG+TPFF+VYGAEA+LP+D+ + SPR AY E N+ + +++LD L+E RD
Sbjct: 861 LRTTPSRATGFTPFFLVYGAEAILPTDLEYGSPRARAYTEQSNQASREESLDQLEEARDR 920
Query: 407 AAARSVIYQQDLRRYHSR 460
A S YQQ LRRYH+R
Sbjct: 921 ALLHSARYQQSLRRYHAR 938
>gb|AAK26119.1|AC084406_2 (AC084406) putative gag-pol precursor [Oryza sativa]
Length = 1901
Score = 157 bits (397), Expect = 4e-38
Identities = 79/148 (53%), Positives = 102/148 (68%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L L++ W
Sbjct: 1685 GTQFTSELFGDYCEDMSIKLCFASPAHPRSNGQVERANAEILKGLKTKTLNILKKHGDSW 1744
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPRV Y EAD + +D
Sbjct: 1745 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRVTMYCEADQDHLHRDD 1804
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1805 LDYLEERRRRAALRAARYQQSLRRYHQR 1832
>dbj|BAB90479.1| (AP003725) hypothetical protein~similar to gag-pol polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 2030
Score = 155 bits (391), Expect = 2e-37
Identities = 77/148 (52%), Positives = 101/148 (68%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE + I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1814 GTQFTSELFGDYCEDKGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1873
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1874 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1933
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1934 LDYLEERRRRAALRAARYQQSLRRYHQR 1961
>dbj|BAB63721.1| (AP003294) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 2030
Score = 154 bits (390), Expect = 3e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1814 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1873
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1874 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1933
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1934 LDYLEERRQRAALRAARYQQSLRRYHQR 1961
>dbj|BAB32716.1| (AP002902) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2033
Score = 154 bits (389), Expect = 4e-37
Identities = 78/148 (52%), Positives = 100/148 (66%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EILRG+K + L++ W
Sbjct: 1817 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILRGLKTKTFNILKKHGDSW 1876
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1877 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1936
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1937 LDYLEERRWRAALRAARYQQSLRRYHQR 1964
>gb|AAL31648.1|AC079179_3 (AC079179) Putative polyprotein [Oryza sativa]
gb|AAL34947.1|AC079037_20 (AC079037) Putative polyprotein [Oryza sativa]
Length = 1210
Score = 154 bits (389), Expect = 4e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 994 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1053
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1054 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLKSPRATMYCEADQDQLRRDD 1113
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1114 LDYLEERRRRAALRAAHYQQSLRRYHQR 1141
>gb|AAL58269.1|AC068923_11 (AC068923) putative gypsy-type retrotransposon [Oryza sativa]
Length = 1501
Score = 154 bits (389), Expect = 4e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1285 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANSEILKGLKTKTFNILKKHGDSW 1344
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1345 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1404
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1405 LDYLEERRRRAALRAARYQQSLRRYHQR 1432
>gb|AAK55774.1|AC079038_8 (AC079038) Putative polyprotein [Oryza sativa]
Length = 2027
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1811 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1870
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1871 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1930
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1931 LDYLEERRRRAALRAARYQQSLRRYHQR 1958
>dbj|BAB85396.1| (AP003924) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 2030
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1814 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1873
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1874 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1933
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1934 LDYLEERRRRAALRAARYQQSLRRYHQR 1961
>dbj|BAB89075.1| (AP003372) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2030
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1814 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1873
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1874 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1933
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1934 LDYLEERRRRAALRAARYQQSLRRYHQR 1961
>dbj|BAB78622.1| (AP002845) putative GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
Length = 2030
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1814 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1873
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1874 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1933
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1934 LDYLEERRRRAALRAARYQQSLRRYHQR 1961
>dbj|BAB17135.1| (AP002867) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
dbj|BAB17327.1| (AP002747) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2030
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1814 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1873
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1874 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1933
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1934 LDYLEERRRRAALRAARYQQSLRRYHQR 1961
>dbj|BAB85442.1| (AP004031) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2030
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1814 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1873
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1874 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1933
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1934 LDYLEERRRRAALRAARYQQSLRRYHQR 1961
>dbj|BAB85403.1| (AP003924) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2030
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1814 GTQFTSELFGDYCEDMGIKLCFASPAHPKSNGQVERANAEILKGLKTKTFNILKKHGDSW 1873
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1874 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1933
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1934 LDYLEERRRRAALRAARYQQSLRRYHQR 1961
>dbj|BAB21213.1| (AP002913) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1783
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1507 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1566
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1567 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1626
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1627 LDYLEERRRRAALRAARYQQSLRRYHQR 1654
>dbj|BAB85272.1| (AP003291) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2028
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1812 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1871
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1872 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1931
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1932 LDYLEERRRRAALRAARYQQSLRRYHQR 1959
>dbj|BAB39285.1| (AP002971) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2031
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1815 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1874
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1875 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1934
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1935 LDYLEERRRRAALRAARYQQSLRRYHQR 1962
>dbj|BAB64681.1| (AP003296) hypothetical protein~similar to Oryza sativa chromosome 1,
P0537A05.14 [Oryza sativa (japonica cultivar-group)]
Length = 2029
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1813 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1872
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1873 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1932
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1933 LDYLEERRRRAALRAARYQQSLRRYHQR 1960
>gb|AAL82696.1|AC091122_22 (AC091122) putative GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1740
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1524 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1583
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1584 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1643
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1644 LDYLEERRRRAALRAARYQQSLRRYHQR 1671
>dbj|BAB19334.1| (AP003044) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1965
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1814 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1873
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1874 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1933
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1934 LDYLEERRRRAALRAARYQQSLRRYHQR 1961
>dbj|BAB40166.1| (AP002910) hypothetical protein~similar to Oryza sativa chromosome 1,
P0463F06.26 [Oryza sativa (japonica cultivar-group)]
Length = 2014
Score = 154 bits (388), Expect = 5e-37
Identities = 77/148 (52%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1798 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1857
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1858 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1917
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1918 LDYLEERRRRAALRAARYQQSLRRYHQR 1945
>gb|AAK55777.1|AC079038_11 (AC079038) Putative polyprotein [Oryza sativa]
Length = 1992
Score = 153 bits (387), Expect = 6e-37
Identities = 76/148 (51%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN E+L+G+K + L++ W
Sbjct: 1776 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEVLKGLKTKTFNILKKHGDSW 1835
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1836 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1895
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1896 LDYLEERRRRAALRAARYQQSLRRYHQR 1923
>dbj|BAB63891.1| (AP003852) putative GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 153 bits (386), Expect = 8e-37
Identities = 77/148 (52%), Positives = 99/148 (66%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + +CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1811 GTQFTSELFGHYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1870
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1871 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDD 1930
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1931 LDYLEERRRRAALRAARYQQSLRRYHQR 1958
>dbj|BAB91733.1| (AP003284) hypothetical protein~similar to Oryza sativa chromosome 1,
B1064G04.18 [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 152 bits (384), Expect = 1e-36
Identities = 76/148 (51%), Positives = 99/148 (66%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1814 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1873
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y E D + +D
Sbjct: 1874 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCETDQDQLRRDD 1933
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1934 LDYLEERRRRAALRAARYQQSLRRYHQR 1961
>gb|AAL58969.1|AC091811_18 (AC091811) putative gag-pol precursor [Oryza sativa]
Length = 1997
Score = 150 bits (380), Expect = 4e-36
Identities = 76/148 (51%), Positives = 98/148 (65%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+S GQ ERAN EIL+G+K + L++ W
Sbjct: 1781 GTQFTSELFGDYCEDMGIKLCFASPAHPRSKGQVERANAEILKGLKTKTFNILKKHGDSW 1840
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD +D
Sbjct: 1841 IEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQNQLRRDD 1900
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1901 LDYLEERRRRAALRAARYQQSLRRYHQR 1928
>gb|AAK16189.1|AC079887_21 (AC079887) putative polyprotein [Oryza sativa]
Length = 1867
Score = 150 bits (379), Expect = 5e-36
Identities = 75/148 (50%), Positives = 98/148 (65%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1716 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1775
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYG EAVLPS++ SPR Y EAD + +D
Sbjct: 1776 IEELPAVLWANRTTPSRATGETPFFLVYGVEAVLPSELTLRSPRATMYCEADQDQLRRDD 1835
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LR YH R
Sbjct: 1836 LDYLEERRRRAALRAARYQQSLRHYHQR 1863
>dbj|BAB55748.1| (AP003140) putative GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1157
Score = 149 bits (376), Expect = 1e-35
Identities = 75/148 (50%), Positives = 100/148 (66%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++C+ I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 941 GTQFTSELFGDYCKDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1000
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+E+LP+VLW+ TTP+R+TG T FF+VYGAEAVLPS++ SPRV Y EAD + +D
Sbjct: 1001 IEKLPAVLWANRTTPSRATGETSFFLVYGAEAVLPSELTLRSPRVTMYCEADQDQLRRDD 1060
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1061 LDYLEERRRRAALRAARYQQSLRRYHQR 1088
>gb|AAK92547.1|AC051624_5 (AC051624) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1963
Score = 148 bits (373), Expect = 3e-35
Identities = 74/148 (50%), Positives = 97/148 (65%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1747 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1806
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+E+LP+VLW+ TTP+R+TG TPFF VYGAEAVLPS++ SPR Y E D + +D
Sbjct: 1807 IEKLPAVLWANRTTPSRATGETPFFFVYGAEAVLPSELTLGSPRATMYCETDQDQLRRDD 1866
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E AA R+ YQQ LRRYH R
Sbjct: 1867 LDYLEERTRRAALRAARYQQSLRRYHQR 1894
>gb|AAK27822.1|AC022457_25 (AC022457) putative gag-pol precursor [Oryza sativa]
Length = 1720
Score = 147 bits (372), Expect = 4e-35
Identities = 75/148 (50%), Positives = 101/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + GA K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 1504 GTQFTGGAFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLRPYAGKW 1563
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E D
Sbjct: 1564 VDQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFWNFNEEGYEEGRVDD 1623
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
++ L+E R+ A +S Y Q LRRYH+R
Sbjct: 1624 INRLEEAREAALIQSTRYLQGLRRYHNR 1651
>gb|AAM00949.1|AC021892_13 (AC021892) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1945
Score = 147 bits (371), Expect = 5e-35
Identities = 76/148 (51%), Positives = 99/148 (66%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + G K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 1729 GTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKW 1788
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E D
Sbjct: 1789 VQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDD 1848
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L L+E R+ A RS Y Q LRRYH+R
Sbjct: 1849 LHRLEEAREAALIRSARYLQGLRRYHNR 1876
>dbj|BAA84458.1| (AB030283) GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
Length = 1032
Score = 147 bits (370), Expect = 6e-35
Identities = 76/148 (51%), Positives = 99/148 (66%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + G K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 816 GTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKW 875
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E D
Sbjct: 876 VQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDD 935
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L L+E R+ A RS Y Q LRRYH+R
Sbjct: 936 LHRLEEVREAALIRSARYLQGLRRYHNR 963
>dbj|BAA92417.1| (AP001366) Similar to Sorghum bicolor Gypsy-Ty3 type retrotransposon
RetroSor1, polyprotein. (AF098806) [Oryza sativa
(japonica cultivar-group)]
Length = 1941
Score = 147 bits (370), Expect = 6e-35
Identities = 75/148 (50%), Positives = 97/148 (64%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EILR +K + L++ W
Sbjct: 1725 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILRCLKTKTFNILKKHGDSW 1784
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TP+R+TG TPFF+VYGAEAVLPS++ SPR Y EAD + +D
Sbjct: 1785 IEELPAVLWANRITPSRATGETPFFLVYGAEAVLPSELTLRSPRAIMYCEADQDQLRRDD 1844
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R A R+ YQQ LRRYH R
Sbjct: 1845 LDYLEERRRREALRAARYQQSLRRYHQR 1872
>gb|AAK53857.1|AC016781_11 (AC016781) Putative retroelement [Oryza sativa]
Length = 1541
Score = 146 bits (368), Expect = 1e-34
Identities = 75/148 (50%), Positives = 98/148 (65%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ER N EIL+G+K + L++ W
Sbjct: 1325 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERTNAEILKGLKTKTFNILKKHGDSW 1384
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VL + T P+R+TG TPFF+VYGAEAVLPS++ SPRV Y EAD + +D
Sbjct: 1385 IEELPAVLRANRTMPSRATGETPFFLVYGAEAVLPSELTLRSPRVTMYCEADQDQLRRDD 1444
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1445 LDYLEERRRRAALRAARYQQSLRRYHQR 1472
>gb|AAM19013.1|AC084748_3 (AC084748) putative gag-pol precursor protein [Oryza sativa (japonica
cultivar-group)]
Length = 1497
Score = 146 bits (368), Expect = 1e-34
Identities = 74/148 (50%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + GA K+FCE I++ +SVAHP SNGQ E AN IL+GIK R+ L+ G W
Sbjct: 1281 GTQFTGGAFKDFCEDFCIKICYASVAHPMSNGQVEHANGMILQGIKARVFDRLRPYAGKW 1340
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E D
Sbjct: 1341 VDQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFNEEGYEEGRVDD 1400
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
++ L+E R+ A +S Y Q LRRYH+R
Sbjct: 1401 INRLEEAREAALIQSTRYLQGLRRYHNR 1428
>gb|AAL67586.1|AC018929_8 (AC018929) putative GAG-POL precursor [Oryza sativa]
Length = 1099
Score = 144 bits (364), Expect = 3e-34
Identities = 73/148 (49%), Positives = 100/148 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + GA K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 883 GTQFTGGAFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLRPYAGKW 942
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG + FF+VYGAEA+LPS++ +S R + E E D
Sbjct: 943 VDQLPSVLWSLRTTPSRATGQSSFFLVYGAEAILPSEVEFESLRFRNFNEEGYEEGRVDD 1002
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
++ L+E R+ A +S Y Q LRRYH++
Sbjct: 1003 INRLEEAREAALIQSTRYLQGLRRYHNQ 1030
>dbj|BAB90647.1| (AP003933) putative GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1032
Score = 144 bits (363), Expect = 4e-34
Identities = 72/148 (48%), Positives = 99/148 (66%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + GA K+FCE I++ +SVAHP SNGQ ERAN +L+GIK R+ L+ G W
Sbjct: 816 GTQFTGGAFKDFCEDFGIKICYASVAHPMSNGQVERANGMVLQGIKARVFNRLRPYAGKW 875
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYG EA+LPS++ +S R + E E D
Sbjct: 876 VDQLPSVLWSLRTTPSRATGQSPFFLVYGVEAMLPSEVEFESLRFQNFNEERYEEGRVDD 935
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
++ L+E R+ A +S Y Q L RYH+R
Sbjct: 936 INRLEEAREAALIQSTRYLQGLHRYHNR 963
>gb|AAK43497.1|AC020666_7 (AC020666) gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 144 bits (363), Expect = 4e-34
Identities = 75/148 (50%), Positives = 98/148 (65%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G + G K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 1801 GRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKW 1860
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R Y E E D
Sbjct: 1861 VKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNYREERYEEDRVDD 1920
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L L+E R+ A +S Y Q LRRYH+R
Sbjct: 1921 LHRLEEVREAALIQSARYLQGLRRYHNR 1948
>gb|AAM00991.1|AC090482_20 (AC090482) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 2017
Score = 144 bits (363), Expect = 4e-34
Identities = 75/148 (50%), Positives = 98/148 (65%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G + G K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 1801 GRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKW 1860
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
VE+LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E D
Sbjct: 1861 VEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDD 1920
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L L+E R+ A +S Y Q LRRYH+R
Sbjct: 1921 LHRLEEVREAALIQSARYLQGLRRYHNR 1948
>dbj|BAA99536.1| (AP002484) putative gypsy-type retrotransposon RIRE2 GAG-POL
precursor [Oryza sativa (japonica cultivar-group)]
Length = 1032
Score = 144 bits (362), Expect = 5e-34
Identities = 75/148 (50%), Positives = 98/148 (65%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 816 GTQFTGEVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKW 875
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E D
Sbjct: 876 VQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDD 935
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L L+E R+ A RS Y Q LRRYH+R
Sbjct: 936 LHRLEEVREAALIRSARYLQGLRRYHNR 963
>dbj|BAB03352.1| (AP002486) Similar to Oryza sativa gypsy-type retrotransposon RIRE2;
GAG-POL precursor -orf2 (AB030283) [Oryza sativa
(japonica cultivar-group)]
Length = 1032
Score = 144 bits (362), Expect = 5e-34
Identities = 75/148 (50%), Positives = 98/148 (65%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 816 GTQFTGEVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKW 875
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E D
Sbjct: 876 VQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDD 935
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L L+E R+ A RS Y Q LRRYH+R
Sbjct: 936 LHRLEEVREAALIRSARYLQGLRRYHNR 963
>gb|AAD27548.1|AF111709_2 (AF111709) polyprotein [Oryza sativa subsp. indica] [Oryza sativa
(indica cultivar-group)]
Length = 829
Score = 143 bits (361), Expect = 7e-34
Identities = 74/148 (50%), Positives = 99/148 (66%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + G K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 613 GTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKW 672
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E +
Sbjct: 673 VQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVND 732
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L L++ R+ A RS Y Q LRRYH+R
Sbjct: 733 LHRLEKVREAALIRSARYLQGLRRYHNR 760
>gb|AAL82662.1|AC092387_10 (AC092387) putative GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
gb|AAM18149.1|AC092172_9 (AC092172) Putative gag-pol precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1964
Score = 143 bits (360), Expect = 9e-34
Identities = 74/148 (50%), Positives = 98/148 (66%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + G K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 1748 GTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKSYAGKW 1807
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E D
Sbjct: 1808 VQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYGEDRVDD 1867
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L L+E R+ A +S Y Q LRRYH+R
Sbjct: 1868 LHRLEEVREAALIQSARYLQGLRRYHNR 1895
>gb|AAL58229.1|AC084762_3 (AC084762) putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 141 bits (355), Expect = 3e-33
Identities = 74/148 (50%), Positives = 97/148 (65%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G + G K+ CE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 1801 GRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKW 1860
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
VE+LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E D
Sbjct: 1861 VEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDD 1920
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L L+E R+ A +S Y Q LRRYH+R
Sbjct: 1921 LHRLEEVREAALIQSARYLQGLRRYHNR 1948
>gb|AAK72284.1|AC084767_24 (AC084767) putative gag-pol protein [Oryza sativa (japonica
cultivar-group)]
Length = 375
Score = 138 bits (348), Expect = 2e-32
Identities = 71/148 (47%), Positives = 99/148 (65%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + G K+F E I++ +SVAHP SNGQ ERAN +L+GIK ++ L+ G W
Sbjct: 171 GTQFTNGVFKDFYEDFGIKIYYASVAHPMSNGQIERANGMVLQGIKAQVFDRLRPYAGKW 230
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPS+LWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E D
Sbjct: 231 VDQLPSILWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFKERYGEDRVDD- 289
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L+ L+E R+ A +S Y Q LRRYH+R
Sbjct: 290 LNRLEEAREAALIQSARYLQGLRRYHNR 317
>dbj|BAA84632.1| (AP000492) ESTs C26347(C12145),AU078074(C12145) correspond to a
region of the predicted gene.~similar to prpol; Zea mays
retrotransposon Cinful-1. (AF049110) [Oryza sativa
(japonica cultivar-group)]
dbj|BAA85207.1| (AP000570) ESTs C26347(C12145),AU078074(C12145) correspond to a
region of the predicted gene.~Similar to prpol; Zea mays
retrotransposon Cinful-1. (AF049110) [Oryza sativa
(japonica cultivar-group)]
Length = 1583
Score = 138 bits (347), Expect = 3e-32
Identities = 72/148 (48%), Positives = 97/148 (64%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + K+FCE I++ +SVAHP SNGQ ERAN +L+GIK R+ L G W
Sbjct: 1378 GTQFTGDVFKDFCEDFGIKICYASVAHPMSNGQVERANGMVLQGIKARVFDRLCPYDGKW 1437
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
V++LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E D
Sbjct: 1438 VDQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSELEFESLRFRNFKEERYGEDRVDD 1497
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L+ L+E R+ A +S Y Q LRRYH+R
Sbjct: 1498 LNRLEEAREAALIQSAWYLQGLRRYHNR 1525
>gb|AAL66751.1|AF464738_2 (AF464738) putative gag-pol precursor [Zea mays]
Length = 2003
Score = 137 bits (345), Expect = 5e-32
Identities = 68/148 (45%), Positives = 92/148 (61%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + +FCE HIR+D ++VAHP +NGQ
Sbjct: 1801 GTQFTGRKFLDFCEDHHIRVDWAAVAHPMTNGQ--------------------------- 1833
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
ELPSV+WS+ TTP+R+TG+TPFF+VYGAEA+LP+D+ + SPR AY + N+T+ +D+
Sbjct: 1834 --ELPSVVWSLRTTPSRATGFTPFFLVYGAEAILPTDLEYGSPRTRAYADQSNQTSREDS 1891
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E RD+A SV YQQ LRRYH+R
Sbjct: 1892 LDQLEEARDMALLHSVRYQQSLRRYHAR 1919
>gb|AAK70625.1|AC091238_3 (AC091238) Putative gag-pol precursor [Oryza sativa]
gb|AAL76197.1|AC092173_9 (AC092173) Putative gag-pol precursor [Oryza sativa]
Length = 1081
Score = 137 bits (344), Expect = 6e-32
Identities = 70/145 (48%), Positives = 97/145 (66%)
Frame = +2
Query: 20 TNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCWV 199
T + ++C+ I+L +S AHP+SNGQ +RAN EIL+G+K + L++ W+
Sbjct: 937 TQFTSELFGDYCDDMGIKLCFASPAHPKSNGQVKRANAEILKGLKTKAYNVLKKHGDSWL 996
Query: 200 EELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDAL 379
EELP+VLW+ TTP+R+T TPFF+VYGAEAVLPS++ PRV Y EA+++ +D L
Sbjct: 997 EELPAVLWANRTTPSRATRETPFFLVYGAEAVLPSELSLGLPRVTLYDEANHDDLRRDDL 1056
Query: 380 DLLDEERDIAAARSVIYQQDLRRYH 454
D L+E R AA R+ YQQ L RYH
Sbjct: 1057 DYLEERRMRAALRAARYQQSLWRYH 1081
>gb|AAM08527.1|AC068654_29 (AC068654) putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 756
Score = 135 bits (341), Expect = 1e-31
Identities = 66/148 (44%), Positives = 94/148 (62%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G+ +++C +++ + V+HPQSNGQ ERAN +L+GIK R+ L W
Sbjct: 595 GSQFISADFQDYCIGLGVKICFALVSHPQSNGQVERANSIVLQGIKTRVYDRLMSHDKKW 654
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
VEELPSV W++ TTP S TPFF+VYG+EA+LP+++RH S RV Y + D + D
Sbjct: 655 VEELPSVQWAVRTTPTTSNKETPFFLVYGSEAMLPTELRHQSTRVQKYSDEDQDEQRNDD 714
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
++LL+E R+ A R+ YQQ LRRYH +
Sbjct: 715 VNLLEEHRERVAVRAASYQQALRRYHEK 742
>dbj|BAB61228.1| (AP003257) hypothetical protein~similar to Oryza sativa chromosome
1, P0707D10.24 [Oryza sativa (japonica cultivar-group)]
Length = 197
Score = 130 bits (326), Expect = 8e-30
Identities = 66/117 (56%), Positives = 81/117 (68%)
Frame = +2
Query: 110 GQAERANQEILRGIKPRLLVPLQRTLGCWVEELPSVLWSINTTPNRSTGYTPFFMVYGAE 289
GQ E AN EILRG+K + L++ WVEELP+VLW+ TTP+R+TG TPFF+VYGAE
Sbjct: 12 GQVEGANAEILRGLKTKTFNILKKHGDSWVEELPAVLWANRTTPSRATGETPFFLVYGAE 71
Query: 290 AVLPSDIRHDSPRVAAYVEADNETAWQDALDLLDEERDIAAARSVIYQQDLRRYHSR 460
AVLPS++ SPR Y EAD + +D LD L+E R AA R+ YQQ LRRYH R
Sbjct: 72 AVLPSELTLRSPRATMYYEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRRYHQR 128
>gb|AAM14683.1|AC097446_12 (AC097446) Putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 191
Score = 129 bits (324), Expect = 1e-29
Identities = 66/131 (50%), Positives = 87/131 (66%)
Frame = +2
Query: 68 IRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCWVEELPSVLWSINTTPNR 247
I+L +S HP+SNGQ ERAN EI +G+K + L++ W+EELP+VLW+ TT +R
Sbjct: 3 IKLCFASPTHPKSNGQVERANAEIFKGLKTKTYNVLKKHGDSWLEELPAVLWANRTTRSR 62
Query: 248 STGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDALDLLDEERDIAAARSVI 427
+ G TPFF+V+G EAVLPS++ PRV Y EA+ + D LD L+E R AA R+V
Sbjct: 63 APGETPFFLVHGTEAVLPSELSLGLPRVTLYDEANQDDLCHDDLDYLEERRRCAALRAVR 122
Query: 428 YQQDLRRYHSR 460
YQQ L RYH R
Sbjct: 123 YQQSLWRYHQR 133
>gb|AAM22011.1|AC093178_6 (AC093178) Putative gag-pol precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1933
Score = 127 bits (319), Expect = 5e-29
Identities = 66/131 (50%), Positives = 87/131 (66%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G + G K+FCE I++ +SVAHP SNGQ ERAN IL+GIK R+ L+ G W
Sbjct: 1801 GRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKW 1860
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
VE+LPSVLWS+ TTP+R+TG +PFF+VYGAEA+LPS++ +S R + E E D
Sbjct: 1861 VEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDD 1920
Query: 377 LDLLDEERDIA 409
L L+E R+ A
Sbjct: 1921 LHQLEEVREAA 1931
>gb|AAK50597.1|AC084404_22 (AC084404) putative gag-pol precursor [Oryza sativa]
Length = 674
Score = 124 bits (311), Expect = 4e-28
Identities = 63/128 (49%), Positives = 87/128 (67%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++C+ I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 546 GTQFTSELFGDYCDDMGIKLCFASPAHPKSNGQVERANAEILKGLKTKTYNVLKKHGDSW 605
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VY AEAVLPS++ SPRVA Y EA+ + +D
Sbjct: 606 LEELPAVLWANRTTPSRATGETPFFLVYCAEAVLPSELSLGSPRVALYNEANQDDLRRDD 665
Query: 377 LDLLDEER 400
L+ L E R
Sbjct: 666 LNYLAERR 673
>gb|AAM08617.1|AC107314_8 (AC107314) Putative retroelement [Oryza sativa (japonica
cultivar-group)]
Length = 1783
Score = 122 bits (307), Expect = 1e-27
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = +2
Query: 125 ANQEILRGIKPRLLVPLQRTLGCWVEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPS 304
AN EIL+G+K + L++ W+EELP+VLW+ TTP+R+TG TPFF+VYGAEAVLPS
Sbjct: 1604 ANVEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPS 1663
Query: 305 DIRHDSPRVAAYVEADNETAWQDALDLLDEERDIAAARSVIYQQDLRRYHSR 460
++ SPR Y EAD + +D LD L+E R AA R+ YQQ LRRYH R
Sbjct: 1664 ELTLRSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRRYHQR 1715
>dbj|BAB64574.1| (AP003205) hypothetical protein~similar to Oryza sativa
retroelement [Oryza sativa (japonica cultivar-group)]
Length = 322
Score = 117 bits (292), Expect = 7e-26
Identities = 59/118 (50%), Positives = 77/118 (65%)
Frame = +2
Query: 107 NGQAERANQEILRGIKPRLLVPLQRTLGCWVEELPSVLWSINTTPNRSTGYTPFFMVYGA 286
NGQ ERA+ +L+GIK R+ L WVEELPSVLW++ TTP S PFF+VYG+
Sbjct: 136 NGQVERADNIVLQGIKTRVHDRLMSHDKKWVEELPSVLWAMRTTPTTSNKEKPFFLVYGS 195
Query: 287 EAVLPSDIRHDSPRVAAYVEADNETAWQDALDLLDEERDIAAARSVIYQQDLRRYHSR 460
EA+LP+++RH S RV Y + E D ++LL+E R+ A RS YQQ LRRYH +
Sbjct: 196 EAMLPTELRHQSTRVQKYSNEEQEEQRSDDVNLLEEHRERVAIRSASYQQALRRYHEK 253
>dbj|BAA87844.1| (AP000815) EST C72786(E2258) corresponds to a region of the predicted
gene.~Similar to Sorghum bicolor Gypsy-Ty3 type
retrotransposon RetroSor1. (AF098806) [Oryza sativa
(japonica cultivar-group)]
dbj|BAB00646.1| (AP002804) EST C72786(E2258) corresponds to a region of the predicted
gene.~Similar to Sorghum bicolor Gypsy-Ty3 type
retrotransposon RetroSor1. (AF098806) [Oryza sativa
(japonica cultivar-group)]
dbj|BAB17742.1| (AP002862) GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
dbj|BAB44116.1| (AP003103) GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
Length = 1473
Score = 113 bits (282), Expect = 1e-24
Identities = 63/148 (42%), Positives = 82/148 (54%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + ++CE I+L +S AHP+SNGQ ERAN EIL+G+K + L++ W
Sbjct: 1288 GTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSW 1347
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+EELP+VLW+ TTP+R+TG TPFF+VYGAEA
Sbjct: 1348 IEELPAVLWANRTTPSRATGETPFFLVYGAEA---------------------------- 1379
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L+E R AA R+ YQQ LRRYH R
Sbjct: 1380 ---LEERRRRAALRATRYQQSLRRYHQR 1404
>gb|AAK52121.1|AC079936_17 (AC079936) Putative retroelement [Oryza sativa]
Length = 2079
Score = 105 bits (261), Expect = 3e-22
Identities = 55/148 (37%), Positives = 83/148 (55%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G+ +++C +++ +SV+HPQSNGQ ERAN +L+GIK
Sbjct: 1882 GSQFISADFQDYCIGLGVKICFASVSHPQSNGQVERANGIVLQGIK-------------- 1927
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
++LW+I TTP S TPFF VYG+EA+LP ++RH S RV + + + +
Sbjct: 1928 -----TLLWAIRTTPTTSNEETPFFPVYGSEAMLPGELRHQSTRVQKHSDENQDEQRDID 1982
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
++LL+E + A R+ YQQ LRRYH +
Sbjct: 1983 INLLEEHHERVAVRAASYQQALRRYHEK 2010
>gb|AAK71558.1|AC087852_18 (AC087852) putative gag-pol protein precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1049
Score = 103 bits (257), Expect = 8e-22
Identities = 52/89 (58%), Positives = 65/89 (72%)
Frame = +2
Query: 194 WVEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQD 373
W+EEL +VLW+ TTP+ +TG TPFF+VYGAEAVLPS++ SPRVA Y EA+ + +D
Sbjct: 903 WLEELLAVLWANRTTPSCATGETPFFLVYGAEAVLPSELSLGSPRVALYNEANQDELRRD 962
Query: 374 ALDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L+E R AA R+ YQQ LRRYH R
Sbjct: 963 DLDYLEEWRRRAALRAARYQQSLRRYHQR 991
>gb|AAG50898.1|AC068901_7 (AC068901) hypothetical protein [Arabidopsis thaliana]
Length = 243
Score = 102 bits (255), Expect = 1e-21
Identities = 62/149 (41%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GTNL+ +K FC++ IRL S+ +PQ NGQAE AN+ IL IK L W
Sbjct: 66 GTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKK----ILDSKKSMW 121
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLP-SDIRHDSPRVAAYVEAD-NETAWQ 370
+ L VLW+ TTP +ST TPF + YG EAV+P I R A++ +D N +
Sbjct: 122 SDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMNTQMLR 181
Query: 371 DALDLLDEERDIAAARSVIYQQDLRRYHS 457
D +D +DE RD A R YQQ + RY++
Sbjct: 182 DNMDFIDERRDQAMIRVQNYQQAVTRYYN 210
>ref|NP_174882.1| (NM_103345) hypothetical protein [Arabidopsis thaliana]
gb|AAK38382.1|AC079028_6 (AC079028) hypothetical protein [Arabidopsis thaliana]
Length = 257
Score = 102 bits (255), Expect = 1e-21
Identities = 62/149 (41%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GTNL+ +K FC++ IRL S+ +PQ NGQAE AN+ IL IK L W
Sbjct: 80 GTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKK----ILDSKKSMW 135
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLP-SDIRHDSPRVAAYVEAD-NETAWQ 370
+ L VLW+ TTP +ST TPF + YG EAV+P I R A++ +D N +
Sbjct: 136 SDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMNTQMLR 195
Query: 371 DALDLLDEERDIAAARSVIYQQDLRRYHS 457
D +D +DE RD A R YQQ + RY++
Sbjct: 196 DNMDFIDERRDQAMIRVQNYQQAVTRYYN 224
>gb|AAD19359.1| (AF098806) polyprotein [Sorghum bicolor]
gb|AAD27571.1|AF114171_12 (AF114171) polyprotein [Sorghum bicolor]
Length = 1877
Score = 102 bits (253), Expect = 2e-21
Identities = 58/148 (39%), Positives = 81/148 (54%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G KEFC ++ +SV HP+SNG ERAN+ I I LL G W
Sbjct: 1667 GKQFDSDNFKEFCHLIGTKIAFASVYHPESNGAVERANRTIFSAISKTLL---NLRKGKW 1723
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
VEELP V+WS NTT +R+TG+TPF ++YG EA+LP +I+H S R A++E ++
Sbjct: 1724 VEELPRVVWSHNTTVSRATGFTPFKLLYGEEAMLPEEIKHQSLRSMKQQLAEDEEYCKET 1783
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L+ + E A YQQ+ + + R
Sbjct: 1784 LESIRLE---AVENITRYQQETKNWRDR 1808
>gb|AAM18978.1|AC098694_9 (AC098694) Putative gag-pol precursor [Oryza sativa (japonica
cultivar-group)]
Length = 534
Score = 102 bits (253), Expect = 2e-21
Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Frame = +2
Query: 17 GTNLSKGAMK-EFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGC 193
G +L K A + C R +++ +SV+HPQSNGQ ERAN +L+GIK R+ L
Sbjct: 431 GNDLYKKAPNGDCCIRLGVKICFASVSHPQSNGQVERANGIVLQGIKTRVYDRLMSHDKK 490
Query: 194 WVEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDS 322
WVEELPSVLW++ TTP S TPFF+VYG+E +LP+++RH S
Sbjct: 491 WVEELPSVLWAVRTTPTTSNKETPFFLVYGSEGMLPTELRHQS 533
>dbj|BAB90375.1| (AP003561) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2001
Score = 100 bits (248), Expect = 9e-21
Identities = 55/148 (37%), Positives = 87/148 (58%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G G ++ C+ +++++ +SV HPQ+NG ERAN +I+ IK RL + G W
Sbjct: 1790 GKQFESGKFQDMCKGLNLQINFASVGHPQTNGVVERANGKIMEAIKKRLEGSAK---GKW 1846
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
E+L SVLW++ TT RSTG TPF +VYG EA+ PS++ SPR+ + +E +
Sbjct: 1847 PEDLLSVLWALRTTVVRSTGMTPFRLVYGDEAMTPSEVGAHSPRM--IFDQKDEEGREIT 1904
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
L++LDE R A + Y + + Y+++
Sbjct: 1905 LEMLDEIRVEALEKMASYTEGTKSYYNQ 1932
>ref|NP_179143.1| (NM_127101) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD22283.1| (AC006920) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1787
Score = 99.8 bits (247), Expect = 1e-20
Identities = 58/150 (38%), Positives = 80/150 (52%), Gaps = 2/150 (1%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + + FC + IRL S+ +PQ NGQAE N+ IL G+K RL G W
Sbjct: 1570 GTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNKTILDGLKKRL----DEKKGAW 1625
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEAD--NETAWQ 370
+EL VLWS TTP RST TPF + YG EA+ P + + R + + N+
Sbjct: 1626 ADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLL 1685
Query: 371 DALDLLDEERDIAAARSVIYQQDLRRYHSR 460
D LD L+E+RD A R YQQ +++++
Sbjct: 1686 DNLDTLEEQRDQALLRIQNYQQAAAKFYNK 1715
>ref|NP_179114.1| (NM_127072) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD03367.1| (AC005957) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1329
Score = 98.2 bits (243), Expect = 3e-20
Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G+ + FCE IRL S+ +PQ NGQAE N+ I+ +K +L G W
Sbjct: 1112 GSQFISEQFEVFCEEWQIRLSHSTPRYPQGNGQAEAMNKTIISNLKKKL----NAYKGAW 1167
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVA--AYVEADNETAWQ 370
EL +VLW++ TTP R+T TPF ++YG EAV+P++I+ S R E +N
Sbjct: 1168 FGELQNVLWAVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIRNPQNETENNEMII 1227
Query: 371 DALDLLDEERDIAAARSVIYQQDLRRYHS 457
D +D +DE R+ A AR Y RY++
Sbjct: 1228 DVIDTIDERRNRALARMQNYHNAGARYYN 1256
>gb|AAL76007.1|AF466646_15 (AF466646) prpol [Zea mays]
Length = 1317
Score = 97.4 bits (241), Expect = 6e-20
Identities = 53/148 (35%), Positives = 82/148 (54%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT A ++FC++ ++ +SV HP+SNG ERAN I+ GI + + G W
Sbjct: 1104 GTQFDSEAFRDFCDQIGTKIHFASVRHPESNGLVERANGIIMTGIMKLIF---NQPRGKW 1160
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
++L V+WS NTT +RSTG+TPF +++G EA+ P + S R+ A E+D+E A+
Sbjct: 1161 PDQLIKVVWSHNTTTSRSTGFTPFKLLFGDEAITPEKAKAGSIRIVASAESDSEAAYSIE 1220
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
D L+ R A YQ + ++ R
Sbjct: 1221 KDALEGIRLQAVENINKYQAETVKWRDR 1248
>ref|NP_063998.1| (NC_002511) orf764 [Beta vulgaris]
dbj|BAA99310.1| (AP000396) orf764 [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 97.1 bits (240), Expect = 7e-20
Identities = 54/148 (36%), Positives = 83/148 (55%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT +K++C I+ ++V HPQSNGQAE AN++IL ++ +L + G W
Sbjct: 549 GTQFDCDTIKDYCAEFKIKFASAAVCHPQSNGQAEAANKQILLALQKKL----EEHKGLW 604
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
+ +P VLW+ TT +TG +PF + +GAEAV+P ++ S RV Y NE ++A
Sbjct: 605 ADLVPEVLWANRTTEKGATGKSPFSLAFGAEAVVPIEVGLPSFRVQHYDPEVNEQLMREA 664
Query: 377 LDLLDEERDIAAARSVIYQQDLRRYHSR 460
LD L E R AA + + + R ++R
Sbjct: 665 LDQLPEMRLQAALKLAAQKNRMSRIYNR 692
>gb|AAL86511.1|AC099040_15 (AC099040) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1722
Score = 96.7 bits (239), Expect = 9e-20
Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G +E CE ++ + SVAHPQSNG AER N +IL +K RL P + G W
Sbjct: 1512 GKQFDSNKFREMCEGLNLEIKFVSVAHPQSNGAAERTNGKILEALKKRLEGPAK---GKW 1568
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
EE+ SVLW++ T P R T ++PF ++YG EA+ P+++ +SPRV + + E + +
Sbjct: 1569 PEEMLSVLWALRTNPTRPTKFSPFMLLYGDEAMTPAELGTNSPRV---MFSGGEEGREVS 1625
Query: 377 LDLLDEER--------DIAAARSVIYQQDLRRYHSRPG 466
L+LL+ R A + S Y + +R PG
Sbjct: 1626 LELLEGVRVEALEHMHKYATSTSATYNKKVRPTELMPG 1663
>ref|NP_179047.1| (NM_127004) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD15474.1| (AC006067) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1466
Score = 96.3 bits (238), Expect = 1e-19
Identities = 54/132 (40%), Positives = 76/132 (56%), Gaps = 2/132 (1%)
Frame = +2
Query: 68 IRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCWVEELPSVLWSINTTPNR 247
I++ S++ +PQ NGQAE AN+ IL +K RL G W +EL VLW+ TTP R
Sbjct: 1086 IKVSYSTLRYPQGNGQAEAANKTILSNLKKRL----NHLKGGWYDELQPVLWAYRTTPRR 1141
Query: 248 STGYTPFFMVYGAEAVLPSDIRHDSPR--VAAYVEADNETAWQDALDLLDEERDIAAARS 421
STG TPF +VYG +AV+P+++ R A E +N D+LD ++E RD A +
Sbjct: 1142 STGETPFSLVYGMKAVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTINERRDQALIQI 1201
Query: 422 VIYQQDLRRYHS 457
YQ RY++
Sbjct: 1202 QNYQHAAARYYN 1213
>gb|AAL75988.1|AF466204_3 (AF466204) putative GAG-POL precursor -orf2 protein [Sorghum
bicolor]
Length = 756
Score = 96.3 bits (238), Expect = 1e-19
Identities = 46/105 (43%), Positives = 65/105 (61%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
GT + +FC+ I + SVAHP++NGQ ER N I+ +K RL R G W
Sbjct: 629 GTQFTGTTFWDFCDDRGIVIKYVSVAHPRANGQVERVNGMIIDALKKRLYTENDRAPGRW 688
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRV 331
+++LP+V+W + T +R+T +P+FMVYG EAVLPSDI SP +
Sbjct: 689 MKKLPAVVWGLRTQTSRNTEVSPYFMVYGTEAVLPSDITFGSPEL 733
>emb|CAC33017.1| (AJ300474) hypothetical protein [Antirrhinum hispanicum]
Length = 1455
Score = 95.9 bits (237), Expect = 2e-19
Identities = 54/135 (40%), Positives = 78/135 (57%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G + + ++C+ I+ +SV +PQSNGQ E N+ +++G+K RL+ G W
Sbjct: 1324 GIQFTSDQLSKWCDHWKIQHRFTSVGYPQSNGQVEVTNRTLIQGLKARLMT----YQGKW 1379
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
VEE+PS+LW+ TT ST TPF + YG EAV+ ++I S R+ Y E N+
Sbjct: 1380 VEEIPSLLWAYRTTARASTVETPFSLAYGHEAVILAEISTSSCRIQEYNEGRNKEHVILE 1439
Query: 377 LDLLDEERDIAAARS 421
LDLL+E R AA RS
Sbjct: 1440 LDLLEEHRRQAALRS 1454
>gb|AAL31077.1|AC091749_6 (AC091749) putative polyprotein [Oryza sativa]
Length = 1265
Score = 95.5 bits (236), Expect = 2e-19
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Frame = +2
Query: 17 GTNLSKGAMKEFCEREHIRLDVSSVAHPQSNGQAERANQEILRGIKPRLLVPLQRTLGCW 196
G +E CE ++ + +SVAHPQSNG AER N +IL +K RL + G W
Sbjct: 1055 GKQFDSDKSREMCEGLNLEIRFASVAHPQSNGAAERTNGKILEALKKRLEGAAK---GKW 1111
Query: 197 VEELPSVLWSINTTPNRSTGYTPFFMVYGAEAVLPSDIRHDSPRVAAYVEADNETAWQDA 376
EEL SVLW++ TTP R T ++PF ++YG EA+ P+++ +SPRV + + E + +
Sbjct: 1112 PEELL